data_3L0D # _model_server_result.job_id PtufVTIOZtAZPCa94PLrAg _model_server_result.datetime_utc '2025-03-13 19:10:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":336}' # _entry.id 3L0D # _exptl.entry_id 3L0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3L0D _cell.length_a 91.776 _cell.length_b 91.776 _cell.length_c 161.402 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 A,C,E 3 1 B,D,F 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -53.800667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 3L0D _atom_sites.fract_transf_matrix[1][1] 0.010896 _atom_sites.fract_transf_matrix[1][2] 0.006291 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 336 336 NAD NAD . D 2 NAD B 1 336 336 NAD NAD . E 3 HOH A 1 337 1 HOH HOH . E 3 HOH A 2 338 3 HOH HOH . E 3 HOH A 3 339 5 HOH HOH . E 3 HOH A 4 340 8 HOH HOH . E 3 HOH A 5 341 9 HOH HOH . E 3 HOH A 6 342 10 HOH HOH . E 3 HOH A 7 343 11 HOH HOH . E 3 HOH A 8 344 13 HOH HOH . E 3 HOH A 9 345 14 HOH HOH . E 3 HOH A 10 346 15 HOH HOH . E 3 HOH A 11 347 17 HOH HOH . E 3 HOH A 12 348 18 HOH HOH . E 3 HOH A 13 349 20 HOH HOH . E 3 HOH A 14 350 21 HOH HOH . E 3 HOH A 15 351 22 HOH HOH . E 3 HOH A 16 352 24 HOH HOH . E 3 HOH A 17 353 25 HOH HOH . E 3 HOH A 18 354 26 HOH HOH . E 3 HOH A 19 355 28 HOH HOH . E 3 HOH A 20 356 29 HOH HOH . E 3 HOH A 21 357 30 HOH HOH . E 3 HOH A 22 358 31 HOH HOH . E 3 HOH A 23 359 33 HOH HOH . E 3 HOH A 24 360 34 HOH HOH . E 3 HOH A 25 361 35 HOH HOH . E 3 HOH A 26 362 36 HOH HOH . E 3 HOH A 27 363 37 HOH HOH . E 3 HOH A 28 364 39 HOH HOH . E 3 HOH A 29 365 40 HOH HOH . E 3 HOH A 30 366 41 HOH HOH . E 3 HOH A 31 367 42 HOH HOH . E 3 HOH A 32 368 43 HOH HOH . E 3 HOH A 33 369 45 HOH HOH . E 3 HOH A 34 370 46 HOH HOH . E 3 HOH A 35 371 47 HOH HOH . E 3 HOH A 36 372 48 HOH HOH . E 3 HOH A 37 373 49 HOH HOH . E 3 HOH A 38 374 50 HOH HOH . E 3 HOH A 39 375 51 HOH HOH . E 3 HOH A 40 376 52 HOH HOH . E 3 HOH A 41 377 53 HOH HOH . E 3 HOH A 42 378 54 HOH HOH . E 3 HOH A 43 379 55 HOH HOH . E 3 HOH A 44 380 56 HOH HOH . E 3 HOH A 45 381 57 HOH HOH . E 3 HOH A 46 382 58 HOH HOH . E 3 HOH A 47 383 59 HOH HOH . E 3 HOH A 48 384 60 HOH HOH . E 3 HOH A 49 385 61 HOH HOH . E 3 HOH A 50 386 62 HOH HOH . E 3 HOH A 51 387 64 HOH HOH . E 3 HOH A 52 388 65 HOH HOH . E 3 HOH A 53 389 66 HOH HOH . E 3 HOH A 54 390 67 HOH HOH . E 3 HOH A 55 391 68 HOH HOH . E 3 HOH A 56 392 69 HOH HOH . E 3 HOH A 57 393 70 HOH HOH . E 3 HOH A 58 394 71 HOH HOH . E 3 HOH A 59 395 72 HOH HOH . E 3 HOH A 60 396 73 HOH HOH . E 3 HOH A 61 397 74 HOH HOH . E 3 HOH A 62 398 75 HOH HOH . E 3 HOH A 63 399 76 HOH HOH . E 3 HOH A 64 400 77 HOH HOH . E 3 HOH A 65 401 78 HOH HOH . E 3 HOH A 66 402 79 HOH HOH . E 3 HOH A 67 403 80 HOH HOH . E 3 HOH A 68 404 82 HOH HOH . E 3 HOH A 69 405 88 HOH HOH . E 3 HOH A 70 406 89 HOH HOH . E 3 HOH A 71 407 90 HOH HOH . E 3 HOH A 72 408 91 HOH HOH . E 3 HOH A 73 409 92 HOH HOH . E 3 HOH A 74 410 93 HOH HOH . E 3 HOH A 75 411 94 HOH HOH . E 3 HOH A 76 412 95 HOH HOH . E 3 HOH A 77 413 96 HOH HOH . E 3 HOH A 78 414 97 HOH HOH . F 3 HOH B 1 337 2 HOH HOH . F 3 HOH B 2 338 4 HOH HOH . F 3 HOH B 3 339 6 HOH HOH . F 3 HOH B 4 340 7 HOH HOH . F 3 HOH B 5 341 12 HOH HOH . F 3 HOH B 6 342 16 HOH HOH . F 3 HOH B 7 343 19 HOH HOH . F 3 HOH B 8 344 23 HOH HOH . F 3 HOH B 9 345 27 HOH HOH . F 3 HOH B 10 346 32 HOH HOH . F 3 HOH B 11 347 38 HOH HOH . F 3 HOH B 12 348 44 HOH HOH . F 3 HOH B 13 349 63 HOH HOH . F 3 HOH B 14 350 81 HOH HOH . F 3 HOH B 15 351 83 HOH HOH . F 3 HOH B 16 352 84 HOH HOH . F 3 HOH B 17 353 85 HOH HOH . F 3 HOH B 18 354 86 HOH HOH . F 3 HOH B 19 355 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 2 49.093 -16.982 -18.772 1 53.91 ? PA NAD 336 B 1 HETATM 2 O O1A NAD . . . D 2 49.556 -16.2 -19.984 1 54.42 ? O1A NAD 336 B 1 HETATM 3 O O2A NAD . . . D 2 47.783 -17.744 -18.873 1 53.5 ? O2A NAD 336 B 1 HETATM 4 O O5B NAD . . . D 2 50.259 -18.034 -18.352 1 54.66 ? O5B NAD 336 B 1 HETATM 5 C C5B NAD . . . D 2 50.002 -19.402 -18.031 1 55.79 ? C5B NAD 336 B 1 HETATM 6 C C4B NAD . . . D 2 50.713 -20.269 -19.063 1 57.77 ? C4B NAD 336 B 1 HETATM 7 O O4B NAD . . . D 2 50.885 -21.605 -18.59 1 58.96 ? O4B NAD 336 B 1 HETATM 8 C C3B NAD . . . D 2 49.942 -20.341 -20.369 1 58.3 ? C3B NAD 336 B 1 HETATM 9 O O3B NAD . . . D 2 50.833 -19.971 -21.421 1 59.33 ? O3B NAD 336 B 1 HETATM 10 C C2B NAD . . . D 2 49.502 -21.784 -20.517 1 58.65 ? C2B NAD 336 B 1 HETATM 11 O O2B NAD . . . D 2 49.652 -22.269 -21.855 1 57.96 ? O2B NAD 336 B 1 HETATM 12 C C1B NAD . . . D 2 50.402 -22.549 -19.553 1 59.73 ? C1B NAD 336 B 1 HETATM 13 N N9A NAD . . . D 2 49.677 -23.674 -18.889 1 60.88 ? N9A NAD 336 B 1 HETATM 14 C C8A NAD . . . D 2 48.384 -23.688 -18.502 1 60.86 ? C8A NAD 336 B 1 HETATM 15 N N7A NAD . . . D 2 48.095 -24.885 -17.949 1 60.91 ? N7A NAD 336 B 1 HETATM 16 C C5A NAD . . . D 2 49.228 -25.64 -17.987 1 62.03 ? C5A NAD 336 B 1 HETATM 17 C C6A NAD . . . D 2 49.559 -26.942 -17.569 1 60.92 ? C6A NAD 336 B 1 HETATM 18 N N6A NAD . . . D 2 48.646 -27.752 -16.983 1 60.33 ? N6A NAD 336 B 1 HETATM 19 N N1A NAD . . . D 2 50.818 -27.401 -17.76 1 61.26 ? N1A NAD 336 B 1 HETATM 20 C C2A NAD . . . D 2 51.755 -26.633 -18.341 1 61.18 ? C2A NAD 336 B 1 HETATM 21 N N3A NAD . . . D 2 51.473 -25.384 -18.747 1 61.54 ? N3A NAD 336 B 1 HETATM 22 C C4A NAD . . . D 2 50.221 -24.862 -18.585 1 61.6 ? C4A NAD 336 B 1 HETATM 23 O O3 NAD . . . D 2 49.001 -15.96 -17.503 1 53.73 ? O3 NAD 336 B 1 HETATM 24 P PN NAD . . . D 2 50.239 -15.365 -16.625 1 53.38 ? PN NAD 336 B 1 HETATM 25 O O1N NAD . . . D 2 50.157 -13.86 -16.561 1 52.16 ? O1N NAD 336 B 1 HETATM 26 O O2N NAD . . . D 2 51.534 -16.026 -17.069 1 55.96 ? O2N NAD 336 B 1 HETATM 27 O O5D NAD . . . D 2 49.953 -15.885 -15.124 1 54.62 ? O5D NAD 336 B 1 HETATM 28 C C5D NAD . . . D 2 50.851 -16.767 -14.415 1 54.71 ? C5D NAD 336 B 1 HETATM 29 C C4D NAD . . . D 2 50.809 -16.547 -12.896 1 53.8 ? C4D NAD 336 B 1 HETATM 30 O O4D NAD . . . D 2 51.499 -15.33 -12.568 1 53 ? O4D NAD 336 B 1 HETATM 31 C C3D NAD . . . D 2 49.378 -16.429 -12.351 1 53.03 ? C3D NAD 336 B 1 HETATM 32 O O3D NAD . . . D 2 49.185 -17.304 -11.243 1 51.41 ? O3D NAD 336 B 1 HETATM 33 C C2D NAD . . . D 2 49.253 -14.992 -11.898 1 52.81 ? C2D NAD 336 B 1 HETATM 34 O O2D NAD . . . D 2 48.503 -14.846 -10.699 1 53.54 ? O2D NAD 336 B 1 HETATM 35 C C1D NAD . . . D 2 50.693 -14.582 -11.637 1 53.14 ? C1D NAD 336 B 1 HETATM 36 N N1N NAD . . . D 2 50.812 -13.122 -11.734 1 52.62 ? N1N NAD 336 B 1 HETATM 37 C C2N NAD . . . D 2 50.558 -12.518 -12.905 1 51.43 ? C2N NAD 336 B 1 HETATM 38 C C3N NAD . . . D 2 50.646 -11.138 -13.033 1 51.24 ? C3N NAD 336 B 1 HETATM 39 C C7N NAD . . . D 2 50.344 -10.504 -14.376 1 50.48 ? C7N NAD 336 B 1 HETATM 40 O O7N NAD . . . D 2 49.959 -9.226 -14.48 1 48.72 ? O7N NAD 336 B 1 HETATM 41 N N7N NAD . . . D 2 50.444 -11.246 -15.478 1 49.28 ? N7N NAD 336 B 1 HETATM 42 C C4N NAD . . . D 2 50.997 -10.391 -11.91 1 50.76 ? C4N NAD 336 B 1 HETATM 43 C C5N NAD . . . D 2 51.25 -11.039 -10.705 1 51.47 ? C5N NAD 336 B 1 HETATM 44 C C6N NAD . . . D 2 51.149 -12.42 -10.637 1 51.93 ? C6N NAD 336 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #