data_3L0J # _model_server_result.job_id GqwNIhPPPhGAgdibQ8oYfg _model_server_result.datetime_utc '2024-10-10 16:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3L0J # _exptl.entry_id 3L0J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.653 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3alpha,8alpha,22R)-cholest-5-ene-3,22-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment 22(R)-hydroxycholesterol _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L0J _cell.length_a 58.502 _cell.length_b 58.502 _cell.length_c 159.032 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H46 O2' _chem_comp.formula_weight 402.653 _chem_comp.id HC9 _chem_comp.mon_nstd_flag . _chem_comp.name (3alpha,8alpha,22R)-cholest-5-ene-3,22-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HC9 sing 129 n n C1 C10 HC9 sing 130 n n O1 C3 HC9 sing 131 n n C2 C3 HC9 sing 132 n n O2 C22 HC9 sing 133 n n C3 C4 HC9 sing 134 n n C4 C5 HC9 sing 135 n n C5 C6 HC9 doub 136 n n C5 C10 HC9 sing 137 n n C6 C7 HC9 sing 138 n n C7 C8 HC9 sing 139 n n C8 C9 HC9 sing 140 n n C8 C14 HC9 sing 141 n n C9 C10 HC9 sing 142 n n C9 C11 HC9 sing 143 n n C10 C19 HC9 sing 144 n n C11 C12 HC9 sing 145 n n C12 C13 HC9 sing 146 n n C13 C14 HC9 sing 147 n n C13 C17 HC9 sing 148 n n C13 C18 HC9 sing 149 n n C14 C15 HC9 sing 150 n n C15 C16 HC9 sing 151 n n C16 C17 HC9 sing 152 n n C17 C20 HC9 sing 153 n n C20 C21 HC9 sing 154 n n C20 C22 HC9 sing 155 n n C22 C23 HC9 sing 156 n n C23 C24 HC9 sing 157 n n C24 C25 HC9 sing 158 n n C25 C26 HC9 sing 159 n n C25 C27 HC9 sing 160 n n C1 H1 HC9 sing 161 n n C1 H1A HC9 sing 162 n n O1 HO1 HC9 sing 163 n n C2 H2 HC9 sing 164 n n C2 H2A HC9 sing 165 n n O2 HO2 HC9 sing 166 n n C3 H3 HC9 sing 167 n n C4 H4 HC9 sing 168 n n C4 H4A HC9 sing 169 n n C6 H6 HC9 sing 170 n n C7 H7 HC9 sing 171 n n C7 H7A HC9 sing 172 n n C8 H8 HC9 sing 173 n n C9 H9 HC9 sing 174 n n C11 H11 HC9 sing 175 n n C11 H11A HC9 sing 176 n n C12 H12 HC9 sing 177 n n C12 H12A HC9 sing 178 n n C14 H14 HC9 sing 179 n n C15 H15 HC9 sing 180 n n C15 H15A HC9 sing 181 n n C16 H16 HC9 sing 182 n n C16 H16A HC9 sing 183 n n C17 H17 HC9 sing 184 n n C18 H18 HC9 sing 185 n n C18 H18A HC9 sing 186 n n C18 H18B HC9 sing 187 n n C19 H19 HC9 sing 188 n n C19 H19A HC9 sing 189 n n C19 H19B HC9 sing 190 n n C20 H20 HC9 sing 191 n n C21 H21 HC9 sing 192 n n C21 H21A HC9 sing 193 n n C21 H21B HC9 sing 194 n n C22 H22 HC9 sing 195 n n C23 H23 HC9 sing 196 n n C23 H23A HC9 sing 197 n n C24 H24 HC9 sing 198 n n C24 H24A HC9 sing 199 n n C25 H25 HC9 sing 200 n n C26 H26 HC9 sing 201 n n C26 H26A HC9 sing 202 n n C26 H26B HC9 sing 203 n n C27 H27 HC9 sing 204 n n C27 H27A HC9 sing 205 n n C27 H27B HC9 sing 206 n n # _atom_sites.entry_id 3L0J _atom_sites.fract_transf_matrix[1][1] 0.017093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HC9 A 1 1 1 HC9 HC9 . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 6 6 HOH HOH . D 4 HOH A 6 7 7 HOH HOH . D 4 HOH A 7 8 8 HOH HOH . D 4 HOH A 8 9 9 HOH HOH . D 4 HOH A 9 10 10 HOH HOH . D 4 HOH A 10 11 11 HOH HOH . D 4 HOH A 11 12 12 HOH HOH . D 4 HOH A 12 13 13 HOH HOH . D 4 HOH A 13 14 14 HOH HOH . D 4 HOH A 14 15 15 HOH HOH . D 4 HOH A 15 16 16 HOH HOH . D 4 HOH A 16 17 17 HOH HOH . D 4 HOH A 17 18 18 HOH HOH . D 4 HOH A 18 20 20 HOH HOH . D 4 HOH A 19 22 22 HOH HOH . D 4 HOH A 20 23 23 HOH HOH . D 4 HOH A 21 24 24 HOH HOH . D 4 HOH A 22 25 25 HOH HOH . D 4 HOH A 23 26 26 HOH HOH . D 4 HOH A 24 28 28 HOH HOH . D 4 HOH A 25 29 29 HOH HOH . D 4 HOH A 26 30 30 HOH HOH . D 4 HOH A 27 31 31 HOH HOH . D 4 HOH A 28 32 32 HOH HOH . D 4 HOH A 29 33 33 HOH HOH . D 4 HOH A 30 34 34 HOH HOH . D 4 HOH A 31 35 35 HOH HOH . D 4 HOH A 32 36 36 HOH HOH . D 4 HOH A 33 37 37 HOH HOH . D 4 HOH A 34 38 38 HOH HOH . D 4 HOH A 35 39 39 HOH HOH . D 4 HOH A 36 40 40 HOH HOH . D 4 HOH A 37 41 41 HOH HOH . D 4 HOH A 38 42 42 HOH HOH . D 4 HOH A 39 43 43 HOH HOH . D 4 HOH A 40 44 44 HOH HOH . D 4 HOH A 41 45 45 HOH HOH . D 4 HOH A 42 46 46 HOH HOH . D 4 HOH A 43 47 47 HOH HOH . D 4 HOH A 44 48 48 HOH HOH . D 4 HOH A 45 49 49 HOH HOH . D 4 HOH A 46 50 50 HOH HOH . D 4 HOH A 47 51 51 HOH HOH . D 4 HOH A 48 52 52 HOH HOH . D 4 HOH A 49 53 53 HOH HOH . D 4 HOH A 50 54 54 HOH HOH . D 4 HOH A 51 56 56 HOH HOH . D 4 HOH A 52 57 57 HOH HOH . D 4 HOH A 53 58 58 HOH HOH . D 4 HOH A 54 59 59 HOH HOH . D 4 HOH A 55 60 60 HOH HOH . D 4 HOH A 56 61 61 HOH HOH . D 4 HOH A 57 62 62 HOH HOH . D 4 HOH A 58 63 63 HOH HOH . D 4 HOH A 59 64 64 HOH HOH . D 4 HOH A 60 65 65 HOH HOH . D 4 HOH A 61 66 66 HOH HOH . D 4 HOH A 62 67 67 HOH HOH . D 4 HOH A 63 68 68 HOH HOH . D 4 HOH A 64 69 69 HOH HOH . D 4 HOH A 65 70 70 HOH HOH . D 4 HOH A 66 71 71 HOH HOH . D 4 HOH A 67 72 72 HOH HOH . D 4 HOH A 68 73 73 HOH HOH . D 4 HOH A 69 74 74 HOH HOH . D 4 HOH A 70 75 75 HOH HOH . D 4 HOH A 71 76 76 HOH HOH . D 4 HOH A 72 77 77 HOH HOH . D 4 HOH A 73 78 78 HOH HOH . D 4 HOH A 74 79 79 HOH HOH . D 4 HOH A 75 80 80 HOH HOH . D 4 HOH A 76 81 81 HOH HOH . D 4 HOH A 77 82 82 HOH HOH . D 4 HOH A 78 83 83 HOH HOH . D 4 HOH A 79 84 84 HOH HOH . D 4 HOH A 80 85 85 HOH HOH . D 4 HOH A 81 86 86 HOH HOH . D 4 HOH A 82 87 87 HOH HOH . D 4 HOH A 83 88 88 HOH HOH . D 4 HOH A 84 89 89 HOH HOH . D 4 HOH A 85 90 90 HOH HOH . D 4 HOH A 86 92 92 HOH HOH . D 4 HOH A 87 93 93 HOH HOH . D 4 HOH A 88 94 94 HOH HOH . D 4 HOH A 89 95 95 HOH HOH . D 4 HOH A 90 96 96 HOH HOH . D 4 HOH A 91 97 97 HOH HOH . D 4 HOH A 92 98 98 HOH HOH . D 4 HOH A 93 99 99 HOH HOH . D 4 HOH A 94 100 100 HOH HOH . D 4 HOH A 95 101 101 HOH HOH . D 4 HOH A 96 102 102 HOH HOH . D 4 HOH A 97 103 103 HOH HOH . D 4 HOH A 98 104 104 HOH HOH . D 4 HOH A 99 105 105 HOH HOH . D 4 HOH A 100 106 106 HOH HOH . D 4 HOH A 101 107 107 HOH HOH . D 4 HOH A 102 108 108 HOH HOH . D 4 HOH A 103 109 109 HOH HOH . D 4 HOH A 104 110 110 HOH HOH . D 4 HOH A 105 111 111 HOH HOH . D 4 HOH A 106 112 112 HOH HOH . D 4 HOH A 107 113 113 HOH HOH . D 4 HOH A 108 114 114 HOH HOH . D 4 HOH A 109 115 115 HOH HOH . D 4 HOH A 110 116 116 HOH HOH . D 4 HOH A 111 117 117 HOH HOH . D 4 HOH A 112 118 118 HOH HOH . D 4 HOH A 113 119 119 HOH HOH . D 4 HOH A 114 120 120 HOH HOH . D 4 HOH A 115 121 121 HOH HOH . D 4 HOH A 116 122 122 HOH HOH . D 4 HOH A 117 123 123 HOH HOH . D 4 HOH A 118 124 124 HOH HOH . D 4 HOH A 119 125 125 HOH HOH . D 4 HOH A 120 126 126 HOH HOH . D 4 HOH A 121 127 127 HOH HOH . D 4 HOH A 122 128 128 HOH HOH . D 4 HOH A 123 129 129 HOH HOH . D 4 HOH A 124 130 130 HOH HOH . D 4 HOH A 125 131 131 HOH HOH . D 4 HOH A 126 132 132 HOH HOH . D 4 HOH A 127 133 133 HOH HOH . D 4 HOH A 128 134 134 HOH HOH . D 4 HOH A 129 135 135 HOH HOH . D 4 HOH A 130 136 136 HOH HOH . D 4 HOH A 131 137 137 HOH HOH . D 4 HOH A 132 138 138 HOH HOH . D 4 HOH A 133 140 140 HOH HOH . D 4 HOH A 134 141 141 HOH HOH . D 4 HOH A 135 143 143 HOH HOH . D 4 HOH A 136 144 144 HOH HOH . D 4 HOH A 137 145 145 HOH HOH . D 4 HOH A 138 146 146 HOH HOH . D 4 HOH A 139 147 147 HOH HOH . D 4 HOH A 140 148 148 HOH HOH . D 4 HOH A 141 149 149 HOH HOH . D 4 HOH A 142 151 151 HOH HOH . D 4 HOH A 143 152 152 HOH HOH . D 4 HOH A 144 153 153 HOH HOH . D 4 HOH A 145 154 154 HOH HOH . D 4 HOH A 146 155 155 HOH HOH . D 4 HOH A 147 157 157 HOH HOH . D 4 HOH A 148 158 158 HOH HOH . D 4 HOH A 149 159 159 HOH HOH . D 4 HOH A 150 161 161 HOH HOH . D 4 HOH A 151 162 162 HOH HOH . D 4 HOH A 152 163 163 HOH HOH . D 4 HOH A 153 164 164 HOH HOH . D 4 HOH A 154 165 165 HOH HOH . D 4 HOH A 155 166 166 HOH HOH . D 4 HOH A 156 167 167 HOH HOH . D 4 HOH A 157 168 168 HOH HOH . D 4 HOH A 158 508 1 HOH HOH . E 4 HOH C 1 19 19 HOH HOH . E 4 HOH C 2 21 21 HOH HOH . E 4 HOH C 3 27 27 HOH HOH . E 4 HOH C 4 55 55 HOH HOH . E 4 HOH C 5 91 91 HOH HOH . E 4 HOH C 6 139 139 HOH HOH . E 4 HOH C 7 150 150 HOH HOH . E 4 HOH C 8 156 156 HOH HOH . E 4 HOH C 9 160 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HC9 . . . C 3 -24.139 -0.547 -22.801 1 23.65 ? C1 HC9 1 A 1 HETATM 2 O O1 HC9 . . . C 3 -22.979 2.947 -23.722 1 24.99 ? O1 HC9 1 A 1 HETATM 3 C C2 HC9 . . . C 3 -23.77 0.937 -22.709 1 21.82 ? C2 HC9 1 A 1 HETATM 4 O O2 HC9 . . . C 3 -26.705 -10.308 -24.182 1 24.27 ? O2 HC9 1 A 1 HETATM 5 C C3 HC9 . . . C 3 -23.009 1.511 -23.903 1 23.91 ? C3 HC9 1 A 1 HETATM 6 C C4 HC9 . . . C 3 -23.629 1.084 -25.257 1 21.61 ? C4 HC9 1 A 1 HETATM 7 C C5 HC9 . . . C 3 -23.821 -0.442 -25.237 1 22.79 ? C5 HC9 1 A 1 HETATM 8 C C6 HC9 . . . C 3 -23.178 -1.222 -26.134 1 20.12 ? C6 HC9 1 A 1 HETATM 9 C C7 HC9 . . . C 3 -23.285 -2.731 -26.178 1 21.79 ? C7 HC9 1 A 1 HETATM 10 C C8 HC9 . . . C 3 -24.53 -3.248 -25.461 1 23.29 ? C8 HC9 1 A 1 HETATM 11 C C9 HC9 . . . C 3 -24.638 -2.56 -24.086 1 22.92 ? C9 HC9 1 A 1 HETATM 12 C C10 HC9 . . . C 3 -24.717 -1.028 -24.143 1 23.26 ? C10 HC9 1 A 1 HETATM 13 C C11 HC9 . . . C 3 -25.751 -3.15 -23.198 1 24.12 ? C11 HC9 1 A 1 HETATM 14 C C12 HC9 . . . C 3 -25.636 -4.668 -23.023 1 23.38 ? C12 HC9 1 A 1 HETATM 15 C C13 HC9 . . . C 3 -25.676 -5.331 -24.401 1 23.81 ? C13 HC9 1 A 1 HETATM 16 C C14 HC9 . . . C 3 -24.48 -4.772 -25.195 1 23.28 ? C14 HC9 1 A 1 HETATM 17 C C15 HC9 . . . C 3 -24.272 -5.736 -26.359 1 22.62 ? C15 HC9 1 A 1 HETATM 18 C C16 HC9 . . . C 3 -24.731 -7.084 -25.8 1 22.19 ? C16 HC9 1 A 1 HETATM 19 C C17 HC9 . . . C 3 -25.295 -6.829 -24.393 1 21.21 ? C17 HC9 1 A 1 HETATM 20 C C18 HC9 . . . C 3 -27.029 -5.071 -25.085 1 20.93 ? C18 HC9 1 A 1 HETATM 21 C C19 HC9 . . . C 3 -26.165 -0.555 -24.321 1 22.58 ? C19 HC9 1 A 1 HETATM 22 C C20 HC9 . . . C 3 -26.325 -7.897 -23.976 1 21.76 ? C20 HC9 1 A 1 HETATM 23 C C21 HC9 . . . C 3 -26.918 -7.782 -22.555 1 18.97 ? C21 HC9 1 A 1 HETATM 24 C C22 HC9 . . . C 3 -25.708 -9.293 -24.212 1 24.01 ? C22 HC9 1 A 1 HETATM 25 C C23 HC9 . . . C 3 -24.607 -9.699 -23.232 1 23.36 ? C23 HC9 1 A 1 HETATM 26 C C24 HC9 . . . C 3 -23.674 -10.665 -23.942 1 25.33 ? C24 HC9 1 A 1 HETATM 27 C C25 HC9 . . . C 3 -22.809 -11.512 -23.003 1 26.57 ? C25 HC9 1 A 1 HETATM 28 C C26 HC9 . . . C 3 -22.001 -12.477 -23.858 1 25.46 ? C26 HC9 1 A 1 HETATM 29 C C27 HC9 . . . C 3 -21.898 -10.673 -22.09 1 25.52 ? C27 HC9 1 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #