data_3L0Y # _model_server_result.job_id 8OJDc7RuoouRH5rKJztCKg _model_server_result.datetime_utc '2024-10-20 05:40:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l0y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":257}' # _entry.id 3L0Y # _exptl.entry_id 3L0Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.79 _cell.angle_gamma 90 _cell.entry_id 3L0Y _cell.length_a 124.791 _cell.length_b 78.979 _cell.length_c 62.939 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 24 A ASP 96 1_555 C MG MG . A MG 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 A O ALA 26 A ALA 98 1_555 C MG MG . A MG 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc3 A OD1 ASN 135 A ASN 207 1_555 C MG MG . A MG 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 C MG MG . A MG 257 1_555 E O HOH . A HOH 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc5 C MG MG . A MG 257 1_555 E O HOH . A HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc6 C MG MG . A MG 257 1_555 E O HOH . A HOH 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc7 B OD2 ASP 24 B ASP 96 1_555 D MG MG . B MG 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc8 B O ALA 26 B ALA 98 1_555 D MG MG . B MG 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc9 B OD1 ASN 135 B ASN 207 1_555 D MG MG . B MG 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc10 D MG MG . B MG 257 1_555 F O HOH . B HOH 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc11 D MG MG . B MG 257 1_555 F O HOH . B HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc12 D MG MG . B MG 257 1_555 F O HOH . B HOH 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3L0Y _atom_sites.fract_transf_matrix[1][1] 0.008013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003366 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012662 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 257 257 MG MG . D 2 MG B 1 257 257 MG MG . E 3 HOH A 1 258 258 HOH HOH . E 3 HOH A 2 259 259 HOH HOH . E 3 HOH A 3 260 260 HOH HOH . E 3 HOH A 4 261 261 HOH HOH . E 3 HOH A 5 262 262 HOH HOH . E 3 HOH A 6 263 263 HOH HOH . E 3 HOH A 7 264 264 HOH HOH . E 3 HOH A 8 265 265 HOH HOH . E 3 HOH A 9 266 266 HOH HOH . E 3 HOH A 10 267 267 HOH HOH . E 3 HOH A 11 268 268 HOH HOH . E 3 HOH A 12 269 269 HOH HOH . E 3 HOH A 13 270 270 HOH HOH . E 3 HOH A 14 271 271 HOH HOH . E 3 HOH A 15 272 272 HOH HOH . E 3 HOH A 16 273 273 HOH HOH . E 3 HOH A 17 274 274 HOH HOH . E 3 HOH A 18 275 275 HOH HOH . E 3 HOH A 19 276 276 HOH HOH . E 3 HOH A 20 277 277 HOH HOH . E 3 HOH A 21 278 278 HOH HOH . E 3 HOH A 22 279 279 HOH HOH . E 3 HOH A 23 280 280 HOH HOH . E 3 HOH A 24 281 281 HOH HOH . E 3 HOH A 25 282 282 HOH HOH . E 3 HOH A 26 283 283 HOH HOH . E 3 HOH A 27 284 284 HOH HOH . E 3 HOH A 28 285 285 HOH HOH . E 3 HOH A 29 286 286 HOH HOH . E 3 HOH A 30 287 287 HOH HOH . E 3 HOH A 31 288 288 HOH HOH . E 3 HOH A 32 289 289 HOH HOH . E 3 HOH A 33 290 290 HOH HOH . E 3 HOH A 34 291 291 HOH HOH . E 3 HOH A 35 292 292 HOH HOH . E 3 HOH A 36 293 293 HOH HOH . E 3 HOH A 37 294 294 HOH HOH . E 3 HOH A 38 295 295 HOH HOH . E 3 HOH A 39 296 296 HOH HOH . E 3 HOH A 40 297 297 HOH HOH . E 3 HOH A 41 298 298 HOH HOH . E 3 HOH A 42 299 299 HOH HOH . E 3 HOH A 43 300 300 HOH HOH . E 3 HOH A 44 301 301 HOH HOH . E 3 HOH A 45 302 302 HOH HOH . E 3 HOH A 46 303 303 HOH HOH . E 3 HOH A 47 304 304 HOH HOH . E 3 HOH A 48 305 305 HOH HOH . E 3 HOH A 49 306 306 HOH HOH . E 3 HOH A 50 307 307 HOH HOH . E 3 HOH A 51 308 308 HOH HOH . E 3 HOH A 52 309 309 HOH HOH . E 3 HOH A 53 310 310 HOH HOH . E 3 HOH A 54 311 311 HOH HOH . E 3 HOH A 55 312 312 HOH HOH . E 3 HOH A 56 313 313 HOH HOH . E 3 HOH A 57 314 314 HOH HOH . E 3 HOH A 58 315 315 HOH HOH . E 3 HOH A 59 316 316 HOH HOH . E 3 HOH A 60 317 317 HOH HOH . E 3 HOH A 61 318 318 HOH HOH . E 3 HOH A 62 319 319 HOH HOH . E 3 HOH A 63 320 320 HOH HOH . E 3 HOH A 64 321 321 HOH HOH . E 3 HOH A 65 322 322 HOH HOH . E 3 HOH A 66 323 323 HOH HOH . E 3 HOH A 67 324 324 HOH HOH . E 3 HOH A 68 325 325 HOH HOH . E 3 HOH A 69 326 326 HOH HOH . E 3 HOH A 70 327 327 HOH HOH . E 3 HOH A 71 328 328 HOH HOH . E 3 HOH A 72 329 329 HOH HOH . E 3 HOH A 73 330 330 HOH HOH . E 3 HOH A 74 331 331 HOH HOH . E 3 HOH A 75 332 332 HOH HOH . E 3 HOH A 76 333 333 HOH HOH . E 3 HOH A 77 334 334 HOH HOH . E 3 HOH A 78 335 335 HOH HOH . E 3 HOH A 79 336 336 HOH HOH . E 3 HOH A 80 337 337 HOH HOH . E 3 HOH A 81 338 338 HOH HOH . E 3 HOH A 82 339 339 HOH HOH . E 3 HOH A 83 340 340 HOH HOH . E 3 HOH A 84 341 341 HOH HOH . E 3 HOH A 85 342 342 HOH HOH . E 3 HOH A 86 343 343 HOH HOH . E 3 HOH A 87 344 344 HOH HOH . E 3 HOH A 88 345 345 HOH HOH . E 3 HOH A 89 346 346 HOH HOH . E 3 HOH A 90 347 347 HOH HOH . E 3 HOH A 91 348 348 HOH HOH . E 3 HOH A 92 349 349 HOH HOH . E 3 HOH A 93 350 350 HOH HOH . E 3 HOH A 94 351 351 HOH HOH . E 3 HOH A 95 352 352 HOH HOH . E 3 HOH A 96 353 353 HOH HOH . E 3 HOH A 97 354 354 HOH HOH . E 3 HOH A 98 355 355 HOH HOH . E 3 HOH A 99 356 356 HOH HOH . E 3 HOH A 100 357 357 HOH HOH . E 3 HOH A 101 358 358 HOH HOH . E 3 HOH A 102 359 359 HOH HOH . E 3 HOH A 103 360 360 HOH HOH . F 3 HOH B 1 258 258 HOH HOH . F 3 HOH B 2 259 259 HOH HOH . F 3 HOH B 3 260 260 HOH HOH . F 3 HOH B 4 261 261 HOH HOH . F 3 HOH B 5 262 262 HOH HOH . F 3 HOH B 6 263 263 HOH HOH . F 3 HOH B 7 264 264 HOH HOH . F 3 HOH B 8 265 265 HOH HOH . F 3 HOH B 9 266 266 HOH HOH . F 3 HOH B 10 267 267 HOH HOH . F 3 HOH B 11 268 268 HOH HOH . F 3 HOH B 12 269 269 HOH HOH . F 3 HOH B 13 270 270 HOH HOH . F 3 HOH B 14 271 271 HOH HOH . F 3 HOH B 15 272 272 HOH HOH . F 3 HOH B 16 273 273 HOH HOH . F 3 HOH B 17 274 274 HOH HOH . F 3 HOH B 18 275 275 HOH HOH . F 3 HOH B 19 276 276 HOH HOH . F 3 HOH B 20 277 277 HOH HOH . F 3 HOH B 21 278 278 HOH HOH . F 3 HOH B 22 279 279 HOH HOH . F 3 HOH B 23 280 280 HOH HOH . F 3 HOH B 24 281 281 HOH HOH . F 3 HOH B 25 282 282 HOH HOH . F 3 HOH B 26 283 283 HOH HOH . F 3 HOH B 27 284 284 HOH HOH . F 3 HOH B 28 285 285 HOH HOH . F 3 HOH B 29 286 286 HOH HOH . F 3 HOH B 30 287 287 HOH HOH . F 3 HOH B 31 288 288 HOH HOH . F 3 HOH B 32 289 289 HOH HOH . F 3 HOH B 33 290 290 HOH HOH . F 3 HOH B 34 291 291 HOH HOH . F 3 HOH B 35 292 292 HOH HOH . F 3 HOH B 36 293 293 HOH HOH . F 3 HOH B 37 294 294 HOH HOH . F 3 HOH B 38 295 295 HOH HOH . F 3 HOH B 39 296 296 HOH HOH . F 3 HOH B 40 297 297 HOH HOH . F 3 HOH B 41 298 298 HOH HOH . F 3 HOH B 42 299 299 HOH HOH . F 3 HOH B 43 300 300 HOH HOH . F 3 HOH B 44 301 301 HOH HOH . F 3 HOH B 45 302 302 HOH HOH . F 3 HOH B 46 303 303 HOH HOH . F 3 HOH B 47 304 304 HOH HOH . F 3 HOH B 48 305 305 HOH HOH . F 3 HOH B 49 306 306 HOH HOH . F 3 HOH B 50 307 307 HOH HOH . F 3 HOH B 51 308 308 HOH HOH . F 3 HOH B 52 309 309 HOH HOH . F 3 HOH B 53 310 310 HOH HOH . F 3 HOH B 54 311 311 HOH HOH . F 3 HOH B 55 312 312 HOH HOH . F 3 HOH B 56 313 313 HOH HOH . F 3 HOH B 57 314 314 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 40.29 _atom_site.Cartn_y -9.745 _atom_site.Cartn_z -29.664 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 257 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #