data_3L0Z # _model_server_result.job_id 3yx7f0I-w_loWe4-RcsJOA _model_server_result.datetime_utc '2025-02-05 12:46:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":353}' # _entry.id 3L0Z # _exptl.entry_id 3L0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3L0Z _cell.length_a 119.305 _cell.length_b 119.305 _cell.length_c 170.105 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,K 1 1 B,F,G,H,L 2 1 C,I,J,M 3 1 A,D,E,K 4 1,2 B,F,G,H,L 5 1 C,I,J,M 5 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 56.701667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C ALA 123 A ALA 123 1_555 A N MSE 124 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C MSE 124 A MSE 124 1_555 A N ASN 125 A ASN 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C TYR 131 A TYR 131 1_555 A N MSE 132 A MSE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 A C MSE 132 A MSE 132 1_555 A N LYS 133 A LYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C LYS 215 A LYS 215 1_555 A N MSE 216 A MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 216 A MSE 216 1_555 A N MSE 217 A MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 217 A MSE 217 1_555 A N PRO 218 A PRO 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale9 A C GLN 241 A GLN 241 1_555 A N MSE 242 A MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 A C MSE 242 A MSE 242 1_555 A N SER 243 A SER 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 B C MSE 1 B MSE 1 1_555 B N SER 2 B SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 B C ALA 123 B ALA 123 1_555 B N MSE 124 B MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale13 B C MSE 124 B MSE 124 1_555 B N ASN 125 B ASN 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale14 B C TYR 131 B TYR 131 1_555 B N MSE 132 B MSE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale15 B C MSE 132 B MSE 132 1_555 B N LYS 133 B LYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale16 B C LYS 215 B LYS 215 1_555 B N MSE 216 B MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale17 B C MSE 216 B MSE 216 1_555 B N MSE 217 B MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale18 B C MSE 217 B MSE 217 1_555 B N PRO 218 B PRO 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale19 B C GLN 241 B GLN 241 1_555 B N MSE 242 B MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale20 B C MSE 242 B MSE 242 1_555 B N SER 243 B SER 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale21 C C MSE 1 C MSE 1 1_555 C N SER 2 C SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale22 C C ALA 123 C ALA 123 1_555 C N MSE 124 C MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale23 C C MSE 124 C MSE 124 1_555 C N ASN 125 C ASN 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 C C TYR 131 C TYR 131 1_555 C N MSE 132 C MSE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale25 C C MSE 132 C MSE 132 1_555 C N LYS 133 C LYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale26 C C LYS 215 C LYS 215 1_555 C N MSE 216 C MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 C C MSE 216 C MSE 216 1_555 C N MSE 217 C MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 C C MSE 217 C MSE 217 1_555 C N PRO 218 C PRO 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale29 C C GLN 241 C GLN 241 1_555 C N MSE 242 C MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale30 C C MSE 242 C MSE 242 1_555 C N SER 243 C SER 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3L0Z _atom_sites.fract_transf_matrix[1][1] 0.008382 _atom_sites.fract_transf_matrix[1][2] 0.004839 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 351 1 PO4 PO4 . E 2 PO4 A 1 352 2 PO4 PO4 . F 2 PO4 B 1 351 3 PO4 PO4 . G 2 PO4 B 1 352 4 PO4 PO4 . H 2 PO4 B 1 353 5 PO4 PO4 . I 2 PO4 C 1 351 6 PO4 PO4 . J 2 PO4 C 1 352 7 PO4 PO4 . K 3 HOH A 1 353 1 HOH HOH . K 3 HOH A 2 354 5 HOH HOH . K 3 HOH A 3 355 6 HOH HOH . K 3 HOH A 4 356 9 HOH HOH . L 3 HOH B 1 354 4 HOH HOH . L 3 HOH B 2 355 8 HOH HOH . L 3 HOH B 3 356 10 HOH HOH . M 3 HOH C 1 353 2 HOH HOH . M 3 HOH C 2 354 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . H 2 -38.091 54.743 25.553 1 77.42 ? P PO4 353 B 1 HETATM 2 O O1 PO4 . . . H 2 -38.064 55.66 24.353 1 78.32 ? O1 PO4 353 B 1 HETATM 3 O O2 PO4 . . . H 2 -39.377 54.988 26.339 1 78.23 ? O2 PO4 353 B 1 HETATM 4 O O3 PO4 . . . H 2 -37.984 53.323 25.054 1 73.46 ? O3 PO4 353 B 1 HETATM 5 O O4 PO4 . . . H 2 -36.905 55.05 26.442 1 77.92 ? O4 PO4 353 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #