data_3L15
#
_model_server_result.job_id            FZnPu6GZCKqTGqbozR3SuA 
_model_server_result.datetime_utc      '2024-11-28 11:35:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l15 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":3}' 
#
_entry.id    3L15 
#
_exptl.entry_id    3L15 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.27 
_cell.angle_gamma         90 
_cell.entry_id            3L15 
_cell.length_a            121.144 
_cell.length_b            61.567 
_cell.length_c            80.472 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L15 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F 1 1 
B,C,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 122 A HIS 338 1_555 A N MSE 123 A MSE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 123 A MSE 339 1_555 A N THR 124 A THR 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 A C PRO 162 A PRO 378 1_555 A N MSE 163 A MSE 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale4 A C MSE 163 A MSE 379 1_555 A N CYS 164 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 A C TYR 181 A TYR 397 1_555 A N MSE 182 A MSE 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale6 A C MSE 182 A MSE 398 1_555 A N MSE 183 A MSE 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale7 A C MSE 183 A MSE 399 1_555 A N ASN 184 A ASN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 B C HIS 122 B HIS 338 1_555 B N MSE 123 B MSE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale9 B C MSE 123 B MSE 339 1_555 B N THR 124 B THR 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale10 B C PRO 162 B PRO 378 1_555 B N MSE 163 B MSE 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale11 B C MSE 163 B MSE 379 1_555 B N CYS 164 B CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale12 B C TYR 181 B TYR 397 1_555 B N MSE 182 B MSE 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale13 B C MSE 182 B MSE 398 1_555 B N MSE 183 B MSE 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale14 B C MSE 183 B MSE 399 1_555 B N ASN 184 B ASN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3L15 
_atom_sites.fract_transf_matrix[1][1]    0.008255 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004255 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016242 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013981 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL B 1 1 1 GOL GOL . 
D 2 GOL B 1 2 2 GOL GOL . 
E 2 GOL B 1 3 3 GOL GOL . 
F 3 HOH A 1 1 1 HOH HOH . 
F 3 HOH A 2 4 4 HOH HOH . 
F 3 HOH A 3 10 10 HOH HOH . 
F 3 HOH A 4 13 13 HOH HOH . 
F 3 HOH A 5 15 15 HOH HOH . 
F 3 HOH A 6 16 16 HOH HOH . 
F 3 HOH A 7 23 23 HOH HOH . 
F 3 HOH A 8 24 24 HOH HOH . 
F 3 HOH A 9 25 25 HOH HOH . 
F 3 HOH A 10 26 26 HOH HOH . 
F 3 HOH A 11 27 27 HOH HOH . 
F 3 HOH A 12 29 29 HOH HOH . 
F 3 HOH A 13 30 30 HOH HOH . 
F 3 HOH A 14 31 31 HOH HOH . 
F 3 HOH A 15 32 32 HOH HOH . 
F 3 HOH A 16 35 35 HOH HOH . 
F 3 HOH A 17 37 37 HOH HOH . 
F 3 HOH A 18 41 41 HOH HOH . 
F 3 HOH A 19 42 42 HOH HOH . 
F 3 HOH A 20 45 45 HOH HOH . 
F 3 HOH A 21 47 47 HOH HOH . 
F 3 HOH A 22 48 48 HOH HOH . 
F 3 HOH A 23 49 49 HOH HOH . 
F 3 HOH A 24 50 50 HOH HOH . 
F 3 HOH A 25 51 51 HOH HOH . 
F 3 HOH A 26 53 53 HOH HOH . 
F 3 HOH A 27 55 55 HOH HOH . 
F 3 HOH A 28 57 57 HOH HOH . 
F 3 HOH A 29 58 58 HOH HOH . 
F 3 HOH A 30 59 59 HOH HOH . 
F 3 HOH A 31 60 60 HOH HOH . 
F 3 HOH A 32 61 61 HOH HOH . 
F 3 HOH A 33 62 62 HOH HOH . 
F 3 HOH A 34 63 63 HOH HOH . 
F 3 HOH A 35 66 66 HOH HOH . 
F 3 HOH A 36 67 67 HOH HOH . 
F 3 HOH A 37 69 69 HOH HOH . 
F 3 HOH A 38 70 70 HOH HOH . 
F 3 HOH A 39 72 72 HOH HOH . 
F 3 HOH A 40 73 73 HOH HOH . 
F 3 HOH A 41 74 74 HOH HOH . 
F 3 HOH A 42 75 75 HOH HOH . 
F 3 HOH A 43 77 77 HOH HOH . 
F 3 HOH A 44 78 78 HOH HOH . 
F 3 HOH A 45 79 79 HOH HOH . 
F 3 HOH A 46 81 81 HOH HOH . 
F 3 HOH A 47 83 83 HOH HOH . 
F 3 HOH A 48 86 86 HOH HOH . 
F 3 HOH A 49 88 88 HOH HOH . 
F 3 HOH A 50 91 91 HOH HOH . 
F 3 HOH A 51 94 94 HOH HOH . 
F 3 HOH A 52 96 96 HOH HOH . 
F 3 HOH A 53 99 99 HOH HOH . 
F 3 HOH A 54 100 100 HOH HOH . 
F 3 HOH A 55 102 102 HOH HOH . 
F 3 HOH A 56 107 107 HOH HOH . 
F 3 HOH A 57 108 108 HOH HOH . 
F 3 HOH A 58 112 112 HOH HOH . 
F 3 HOH A 59 113 113 HOH HOH . 
F 3 HOH A 60 114 114 HOH HOH . 
F 3 HOH A 61 122 122 HOH HOH . 
F 3 HOH A 62 123 123 HOH HOH . 
F 3 HOH A 63 131 131 HOH HOH . 
F 3 HOH A 64 132 132 HOH HOH . 
F 3 HOH A 65 142 142 HOH HOH . 
F 3 HOH A 66 144 144 HOH HOH . 
F 3 HOH A 67 149 149 HOH HOH . 
F 3 HOH A 68 150 150 HOH HOH . 
F 3 HOH A 69 153 153 HOH HOH . 
G 3 HOH B 1 5 5 HOH HOH . 
G 3 HOH B 2 6 6 HOH HOH . 
G 3 HOH B 3 7 7 HOH HOH . 
G 3 HOH B 4 8 8 HOH HOH . 
G 3 HOH B 5 9 9 HOH HOH . 
G 3 HOH B 6 11 11 HOH HOH . 
G 3 HOH B 7 12 12 HOH HOH . 
G 3 HOH B 8 14 14 HOH HOH . 
G 3 HOH B 9 17 17 HOH HOH . 
G 3 HOH B 10 18 18 HOH HOH . 
G 3 HOH B 11 19 19 HOH HOH . 
G 3 HOH B 12 20 20 HOH HOH . 
G 3 HOH B 13 21 21 HOH HOH . 
G 3 HOH B 14 22 22 HOH HOH . 
G 3 HOH B 15 28 28 HOH HOH . 
G 3 HOH B 16 33 33 HOH HOH . 
G 3 HOH B 17 34 34 HOH HOH . 
G 3 HOH B 18 36 36 HOH HOH . 
G 3 HOH B 19 38 38 HOH HOH . 
G 3 HOH B 20 39 39 HOH HOH . 
G 3 HOH B 21 40 40 HOH HOH . 
G 3 HOH B 22 43 43 HOH HOH . 
G 3 HOH B 23 44 44 HOH HOH . 
G 3 HOH B 24 46 46 HOH HOH . 
G 3 HOH B 25 52 52 HOH HOH . 
G 3 HOH B 26 54 54 HOH HOH . 
G 3 HOH B 27 56 56 HOH HOH . 
G 3 HOH B 28 64 64 HOH HOH . 
G 3 HOH B 29 65 65 HOH HOH . 
G 3 HOH B 30 68 68 HOH HOH . 
G 3 HOH B 31 71 71 HOH HOH . 
G 3 HOH B 32 76 76 HOH HOH . 
G 3 HOH B 33 80 80 HOH HOH . 
G 3 HOH B 34 82 82 HOH HOH . 
G 3 HOH B 35 84 84 HOH HOH . 
G 3 HOH B 36 85 85 HOH HOH . 
G 3 HOH B 37 87 87 HOH HOH . 
G 3 HOH B 38 89 89 HOH HOH . 
G 3 HOH B 39 90 90 HOH HOH . 
G 3 HOH B 40 92 92 HOH HOH . 
G 3 HOH B 41 93 93 HOH HOH . 
G 3 HOH B 42 95 95 HOH HOH . 
G 3 HOH B 43 97 97 HOH HOH . 
G 3 HOH B 44 98 98 HOH HOH . 
G 3 HOH B 45 101 101 HOH HOH . 
G 3 HOH B 46 103 103 HOH HOH . 
G 3 HOH B 47 104 104 HOH HOH . 
G 3 HOH B 48 105 105 HOH HOH . 
G 3 HOH B 49 106 106 HOH HOH . 
G 3 HOH B 50 109 109 HOH HOH . 
G 3 HOH B 51 110 110 HOH HOH . 
G 3 HOH B 52 111 111 HOH HOH . 
G 3 HOH B 53 115 115 HOH HOH . 
G 3 HOH B 54 116 116 HOH HOH . 
G 3 HOH B 55 117 117 HOH HOH . 
G 3 HOH B 56 118 118 HOH HOH . 
G 3 HOH B 57 119 119 HOH HOH . 
G 3 HOH B 58 120 120 HOH HOH . 
G 3 HOH B 59 121 121 HOH HOH . 
G 3 HOH B 60 124 124 HOH HOH . 
G 3 HOH B 61 125 125 HOH HOH . 
G 3 HOH B 62 126 126 HOH HOH . 
G 3 HOH B 63 127 127 HOH HOH . 
G 3 HOH B 64 128 128 HOH HOH . 
G 3 HOH B 65 129 129 HOH HOH . 
G 3 HOH B 66 130 130 HOH HOH . 
G 3 HOH B 67 133 133 HOH HOH . 
G 3 HOH B 68 134 134 HOH HOH . 
G 3 HOH B 69 135 135 HOH HOH . 
G 3 HOH B 70 136 136 HOH HOH . 
G 3 HOH B 71 137 137 HOH HOH . 
G 3 HOH B 72 138 138 HOH HOH . 
G 3 HOH B 73 139 139 HOH HOH . 
G 3 HOH B 74 140 140 HOH HOH . 
G 3 HOH B 75 141 141 HOH HOH . 
G 3 HOH B 76 143 143 HOH HOH . 
G 3 HOH B 77 145 145 HOH HOH . 
G 3 HOH B 78 146 146 HOH HOH . 
G 3 HOH B 79 147 147 HOH HOH . 
G 3 HOH B 80 148 148 HOH HOH . 
G 3 HOH B 81 151 151 HOH HOH . 
G 3 HOH B 82 152 152 HOH HOH . 
G 3 HOH B 83 154 154 HOH HOH . 
G 3 HOH B 84 155 155 HOH HOH . 
G 3 HOH B 85 156 156 HOH HOH . 
G 3 HOH B 86 157 157 HOH HOH . 
G 3 HOH B 87 158 158 HOH HOH . 
G 3 HOH B 88 159 159 HOH HOH . 
G 3 HOH B 89 160 160 HOH HOH . 
G 3 HOH B 90 448 2 HOH HOH . 
G 3 HOH B 91 449 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 69.708 15.768 -10.842 1 78.1 ? C1 GOL 3 B 1 
HETATM 2 O O1 GOL . . . E 2 69.153 17.018 -11.205 1 64.36 ? O1 GOL 3 B 1 
HETATM 3 C C2 GOL . . . E 2 68.631 14.773 -10.394 1 79.87 ? C2 GOL 3 B 1 
HETATM 4 O O2 GOL . . . E 2 68.943 14.323 -9.096 1 78.34 ? O2 GOL 3 B 1 
HETATM 5 C C3 GOL . . . E 2 68.583 13.565 -11.342 1 84.52 ? C3 GOL 3 B 1 
HETATM 6 O O3 GOL . . . E 2 67.483 12.719 -11.061 1 81.17 ? O3 GOL 3 B 1 
HETATM 7 H H11 GOL . . . E 2 70.424 15.913 -10.033 1 93.77 ? H11 GOL 3 B 1 
HETATM 8 H H12 GOL . . . E 2 70.249 15.354 -11.693 1 93.77 ? H12 GOL 3 B 1 
HETATM 9 H HO1 GOL . . . E 2 69.875 17.645 -11.421 1 77.28 ? HO1 GOL 3 B 1 
HETATM 10 H H2 GOL . . . E 2 67.661 15.27 -10.399 1 95.89 ? H2 GOL 3 B 1 
HETATM 11 H HO2 GOL . . . E 2 68.262 13.684 -8.8 1 94.05 ? HO2 GOL 3 B 1 
HETATM 12 H H31 GOL . . . E 2 69.508 12.996 -11.248 1 101.47 ? H31 GOL 3 B 1 
HETATM 13 H H32 GOL . . . E 2 68.513 13.917 -12.371 1 101.47 ? H32 GOL 3 B 1 
HETATM 14 H HO3 GOL . . . E 2 67.476 11.971 -11.694 1 97.46 ? HO3 GOL 3 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#