data_3L16
#
_model_server_result.job_id            81K6zp6ZhuLkGFR4FpDyMA 
_model_server_result.datetime_utc      '2025-03-24 22:59:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l16 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    3L16 
#
_exptl.entry_id    3L16 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              489.614 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(6-{[4-(methylsulfonyl)piperazin-1-yl]methyl}-4-morpholin-4-ylthieno[3,2-d]pyrimidin-2-yl)pyridin-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.11 
_cell.angle_gamma         90 
_cell.entry_id            3L16 
_cell.length_a            142.635 
_cell.length_b            67.391 
_cell.length_c            106.674 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L16 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H27 N7 O3 S2' 
_chem_comp.formula_weight    489.614 
_chem_comp.id                JZX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(6-{[4-(methylsulfonyl)piperazin-1-yl]methyl}-4-morpholin-4-ylthieno[3,2-d]pyrimidin-2-yl)pyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 JZX doub 171 n y 
C1 N2 JZX sing 172 n y 
C1 C8 JZX sing 173 n y 
N1 C3 JZX sing 174 n y 
O1 C14 JZX sing 175 n n 
O1 C15 JZX sing 176 n n 
S1 C4 JZX sing 177 n y 
S1 C5 JZX sing 178 n y 
C2 N2 JZX doub 179 n y 
C2 C4 JZX sing 180 n y 
C2 N4 JZX sing 181 n n 
O2 S2 JZX doub 182 n n 
S2 O3 JZX doub 183 n n 
S2 N5 JZX sing 184 n n 
S2 C21 JZX sing 185 n n 
C3 C4 JZX doub 186 n y 
C3 C6 JZX sing 187 n y 
N3 C7 JZX sing 188 n n 
N3 C9 JZX sing 189 n n 
N3 C12 JZX sing 190 n n 
N4 C13 JZX sing 191 n n 
N4 C16 JZX sing 192 n n 
C5 C6 JZX doub 193 n y 
C5 C7 JZX sing 194 n n 
N5 C10 JZX sing 195 n n 
N5 C11 JZX sing 196 n n 
N6 C17 JZX doub 197 n y 
N6 C18 JZX sing 198 n y 
N7 C18 JZX sing 199 n n 
C8 C17 JZX sing 200 n y 
C8 C19 JZX doub 201 n y 
C9 C10 JZX sing 202 n n 
C11 C12 JZX sing 203 n n 
C13 C14 JZX sing 204 n n 
C15 C16 JZX sing 205 n n 
C18 C20 JZX doub 206 n y 
C19 C20 JZX sing 207 n y 
C6 H6 JZX sing 208 n n 
C7 H7 JZX sing 209 n n 
C7 H7A JZX sing 210 n n 
N7 HN7 JZX sing 211 n n 
N7 HN7A JZX sing 212 n n 
C9 H9 JZX sing 213 n n 
C9 H9A JZX sing 214 n n 
C10 H10 JZX sing 215 n n 
C10 H10A JZX sing 216 n n 
C11 H11 JZX sing 217 n n 
C11 H11A JZX sing 218 n n 
C12 H12 JZX sing 219 n n 
C12 H12A JZX sing 220 n n 
C13 H13 JZX sing 221 n n 
C13 H13A JZX sing 222 n n 
C14 H14 JZX sing 223 n n 
C14 H14A JZX sing 224 n n 
C15 H15 JZX sing 225 n n 
C15 H15A JZX sing 226 n n 
C16 H16 JZX sing 227 n n 
C16 H16A JZX sing 228 n n 
C17 H17 JZX sing 229 n n 
C19 H19 JZX sing 230 n n 
C20 H20 JZX sing 231 n n 
C21 H21 JZX sing 232 n n 
C21 H21A JZX sing 233 n n 
C21 H21B JZX sing 234 n n 
#
_atom_sites.entry_id                     3L16 
_atom_sites.fract_transf_matrix[1][1]    0.007011 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00075 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014839 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009428 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           JZX 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       JZX 
_pdbx_nonpoly_scheme.auth_mon_id      JZX 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 JZX . . . B 2 22.887 62.178 21.022 1 46.99 ? C1 JZX 1 A 1 
HETATM 2 N N1 JZX . . . B 2 22.687 63.465 20.623 1 47.01 ? N1 JZX 1 A 1 
HETATM 3 O O1 JZX . . . B 2 18.062 59.557 24.048 1 45.4 ? O1 JZX 1 A 1 
HETATM 4 S S1 JZX . . . B 2 19.084 64.236 21.636 1 47.78 ? S1 JZX 1 A 1 
HETATM 5 C C2 JZX . . . B 2 20.677 62.006 21.87 1 45 ? C2 JZX 1 A 1 
HETATM 6 N N2 JZX . . . B 2 21.899 61.483 21.642 1 47.1 ? N2 JZX 1 A 1 
HETATM 7 O O2 JZX . . . B 2 14.958 66.291 15.876 1 70.36 ? O2 JZX 1 A 1 
HETATM 8 S S2 JZX . . . B 2 16.112 67.148 15.847 1 71.46 ? S2 JZX 1 A 1 
HETATM 9 C C3 JZX . . . B 2 21.477 64.031 20.853 1 46.58 ? C3 JZX 1 A 1 
HETATM 10 N N3 JZX . . . B 2 18.342 67.175 19.561 1 57.94 ? N3 JZX 1 A 1 
HETATM 11 O O3 JZX . . . B 2 16.896 66.88 14.674 1 70.01 ? O3 JZX 1 A 1 
HETATM 12 C C4 JZX . . . B 2 20.482 63.318 21.477 1 45.45 ? C4 JZX 1 A 1 
HETATM 13 N N4 JZX . . . B 2 19.744 61.227 22.594 1 46.04 ? N4 JZX 1 A 1 
HETATM 14 C C5 JZX . . . B 2 19.909 65.473 20.862 1 47.66 ? C5 JZX 1 A 1 
HETATM 15 N N5 JZX . . . B 2 17.045 66.838 17.122 1 67.97 ? N5 JZX 1 A 1 
HETATM 16 C C6 JZX . . . B 2 21.118 65.232 20.544 1 46.22 ? C6 JZX 1 A 1 
HETATM 17 N N6 JZX . . . B 2 26.273 61.334 19.714 1 48.07 ? N6 JZX 1 A 1 
HETATM 18 C C7 JZX . . . B 2 19.253 66.838 20.673 1 49.41 ? C7 JZX 1 A 1 
HETATM 19 N N7 JZX . . . B 2 27.812 59.669 20.199 1 45.85 ? N7 JZX 1 A 1 
HETATM 20 C C8 JZX . . . B 2 24.192 61.491 20.813 1 46.81 ? C8 JZX 1 A 1 
HETATM 21 C C9 JZX . . . B 2 17.191 66.256 19.471 1 61.8 ? C9 JZX 1 A 1 
HETATM 22 C C10 JZX . . . B 2 16.262 66.755 18.376 1 64.6 ? C10 JZX 1 A 1 
HETATM 23 C C11 JZX . . . B 2 18.13 67.836 17.234 1 64.4 ? C11 JZX 1 A 1 
HETATM 24 C C12 JZX . . . B 2 19.09 67.337 18.299 1 60.99 ? C12 JZX 1 A 1 
HETATM 25 C C13 JZX . . . B 2 20.188 59.846 22.892 1 45.34 ? C13 JZX 1 A 1 
HETATM 26 C C14 JZX . . . B 2 19.483 59.421 24.172 1 44.16 ? C14 JZX 1 A 1 
HETATM 27 C C15 JZX . . . B 2 17.624 60.839 23.573 1 47.89 ? C15 JZX 1 A 1 
HETATM 28 C C16 JZX . . . B 2 18.315 61.245 22.261 1 46.83 ? C16 JZX 1 A 1 
HETATM 29 C C17 JZX . . . B 2 25.102 61.96 19.882 1 46.7 ? C17 JZX 1 A 1 
HETATM 30 C C18 JZX . . . B 2 26.617 60.246 20.427 1 45.61 ? C18 JZX 1 A 1 
HETATM 31 C C19 JZX . . . B 2 24.53 60.363 21.572 1 47.33 ? C19 JZX 1 A 1 
HETATM 32 C C20 JZX . . . B 2 25.752 59.733 21.377 1 45.29 ? C20 JZX 1 A 1 
HETATM 33 C C21 JZX . . . B 2 15.577 68.729 15.84 1 71.67 ? C21 JZX 1 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           33 
#