data_3L1E
#
_model_server_result.job_id            LhBR1rMAB8-runEPwd3z-w 
_model_server_result.datetime_utc      '2024-12-21 14:41:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l1e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":164}' 
#
_entry.id    3L1E 
#
_exptl.entry_id    3L1E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3L1E 
_cell.length_a            56.215 
_cell.length_b            56.215 
_cell.length_c            68.657 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L1E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B ZN ZN . A ZN 1 1_555 A NE2 HIS 43 A HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc2 B ZN ZN . A ZN 1 1_555 A OE2 GLU 45 A GLU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3L1E 
_atom_sites.fract_transf_matrix[1][1]    0.017789 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017789 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014565 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1 1 ZN ZN . 
C 3 GOL A 1 164 1 GOL GOL . 
D 4 HOH A 1 2 2 HOH HOH . 
D 4 HOH A 2 3 3 HOH HOH . 
D 4 HOH A 3 4 4 HOH HOH . 
D 4 HOH A 4 5 5 HOH HOH . 
D 4 HOH A 5 7 7 HOH HOH . 
D 4 HOH A 6 8 8 HOH HOH . 
D 4 HOH A 7 9 9 HOH HOH . 
D 4 HOH A 8 10 10 HOH HOH . 
D 4 HOH A 9 11 11 HOH HOH . 
D 4 HOH A 10 12 12 HOH HOH . 
D 4 HOH A 11 13 13 HOH HOH . 
D 4 HOH A 12 14 14 HOH HOH . 
D 4 HOH A 13 15 15 HOH HOH . 
D 4 HOH A 14 18 18 HOH HOH . 
D 4 HOH A 15 19 19 HOH HOH . 
D 4 HOH A 16 20 20 HOH HOH . 
D 4 HOH A 17 21 21 HOH HOH . 
D 4 HOH A 18 22 22 HOH HOH . 
D 4 HOH A 19 24 24 HOH HOH . 
D 4 HOH A 20 25 25 HOH HOH . 
D 4 HOH A 21 26 26 HOH HOH . 
D 4 HOH A 22 28 28 HOH HOH . 
D 4 HOH A 23 29 29 HOH HOH . 
D 4 HOH A 24 31 31 HOH HOH . 
D 4 HOH A 25 32 32 HOH HOH . 
D 4 HOH A 26 36 36 HOH HOH . 
D 4 HOH A 27 38 38 HOH HOH . 
D 4 HOH A 28 39 39 HOH HOH . 
D 4 HOH A 29 40 40 HOH HOH . 
D 4 HOH A 30 42 42 HOH HOH . 
D 4 HOH A 31 43 43 HOH HOH . 
D 4 HOH A 32 44 44 HOH HOH . 
D 4 HOH A 33 46 46 HOH HOH . 
D 4 HOH A 34 47 47 HOH HOH . 
D 4 HOH A 35 48 48 HOH HOH . 
D 4 HOH A 36 52 52 HOH HOH . 
D 4 HOH A 37 55 55 HOH HOH . 
D 4 HOH A 38 56 56 HOH HOH . 
D 4 HOH A 39 57 57 HOH HOH . 
D 4 HOH A 40 165 165 HOH HOH . 
D 4 HOH A 41 166 166 HOH HOH . 
D 4 HOH A 42 167 167 HOH HOH . 
D 4 HOH A 43 168 168 HOH HOH . 
D 4 HOH A 44 169 169 HOH HOH . 
D 4 HOH A 45 170 170 HOH HOH . 
D 4 HOH A 46 171 1 HOH HOH . 
D 4 HOH A 47 172 59 HOH HOH . 
D 4 HOH A 48 173 60 HOH HOH . 
D 4 HOH A 49 174 62 HOH HOH . 
D 4 HOH A 50 175 63 HOH HOH . 
D 4 HOH A 51 176 65 HOH HOH . 
D 4 HOH A 52 177 66 HOH HOH . 
D 4 HOH A 53 178 67 HOH HOH . 
D 4 HOH A 54 179 71 HOH HOH . 
D 4 HOH A 55 180 73 HOH HOH . 
D 4 HOH A 56 181 74 HOH HOH . 
D 4 HOH A 57 182 75 HOH HOH . 
D 4 HOH A 58 183 76 HOH HOH . 
D 4 HOH A 59 184 83 HOH HOH . 
D 4 HOH A 60 185 86 HOH HOH . 
D 4 HOH A 61 186 89 HOH HOH . 
D 4 HOH A 62 187 90 HOH HOH . 
D 4 HOH A 63 188 93 HOH HOH . 
D 4 HOH A 64 189 95 HOH HOH . 
D 4 HOH A 65 190 96 HOH HOH . 
D 4 HOH A 66 191 99 HOH HOH . 
D 4 HOH A 67 192 100 HOH HOH . 
D 4 HOH A 68 193 101 HOH HOH . 
D 4 HOH A 69 194 104 HOH HOH . 
D 4 HOH A 70 195 105 HOH HOH . 
D 4 HOH A 71 196 107 HOH HOH . 
D 4 HOH A 72 197 108 HOH HOH . 
D 4 HOH A 73 198 112 HOH HOH . 
D 4 HOH A 74 199 113 HOH HOH . 
D 4 HOH A 75 200 116 HOH HOH . 
D 4 HOH A 76 201 120 HOH HOH . 
D 4 HOH A 77 202 121 HOH HOH . 
D 4 HOH A 78 203 122 HOH HOH . 
D 4 HOH A 79 204 131 HOH HOH . 
D 4 HOH A 80 205 143 HOH HOH . 
D 4 HOH A 81 206 148 HOH HOH . 
D 4 HOH A 82 207 150 HOH HOH . 
D 4 HOH A 83 208 153 HOH HOH . 
D 4 HOH A 84 209 155 HOH HOH . 
D 4 HOH A 85 210 156 HOH HOH . 
D 4 HOH A 86 211 157 HOH HOH . 
D 4 HOH A 87 212 158 HOH HOH . 
D 4 HOH A 88 213 159 HOH HOH . 
D 4 HOH A 89 214 160 HOH HOH . 
D 4 HOH A 90 215 161 HOH HOH . 
D 4 HOH A 91 216 162 HOH HOH . 
D 4 HOH A 92 217 163 HOH HOH . 
D 4 HOH A 93 218 164 HOH HOH . 
D 4 HOH A 94 219 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 4.862 23.603 22.592 1 14.65 ? C1 GOL 164 A 1 
HETATM 2 O O1 GOL . . . C 3 5.597 23.367 23.769 1 14.56 ? O1 GOL 164 A 1 
HETATM 3 C C2 GOL . . . C 3 4.21 22.306 22.132 1 14.02 ? C2 GOL 164 A 1 
HETATM 4 O O2 GOL . . . C 3 3.26 21.824 23.072 1 12.77 ? O2 GOL 164 A 1 
HETATM 5 C C3 GOL . . . C 3 3.548 22.531 20.781 1 15.14 ? C3 GOL 164 A 1 
HETATM 6 O O3 GOL . . . C 3 3.207 21.257 20.288 1 15.93 ? O3 GOL 164 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#