data_3L1R
#
_model_server_result.job_id            gk4hCjyOfW_JPr2XZAGULw 
_model_server_result.datetime_utc      '2024-11-18 17:36:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l1r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    3L1R 
#
_exptl.entry_id    3L1R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3L1R 
_cell.length_a            137.676 
_cell.length_b            137.676 
_cell.length_c            189.148 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L1R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,K 1 1 
B,C,G,H,I,J,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG B 600 NAG 
2 n C NAG 2 C 2 NAG B 601 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 457 A CYS 457 1_555 A SG CYS 463 A CYS 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf2 B SG CYS 457 B CYS 457 1_555 B SG CYS 463 B CYS 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
covale ? covale1 A ND2 ASN 77 A ASN 77 1_555 E C1 NAG . A NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale2 B ND2 ASN 77 B ASN 77 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     3L1R 
_atom_sites.fract_transf_matrix[1][1]    0.007263 
_atom_sites.fract_transf_matrix[1][2]    0.004194 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008387 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005287 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 FAD A 1 500 500 FAD FAD . 
E 4 NAG A 1 600 600 NAG NAG . 
F 5 SPD A 1 700 700 SPD SPD . 
G 3 FAD B 1 500 500 FAD FAD . 
H 5 SPD B 1 700 700 SPD SPD . 
I 6 SO4 B 1 479 1 SO4 SO4 . 
J 7 CL B 1 480 2 CL CL . 
K 8 HOH A 1 479 1 HOH HOH . 
K 8 HOH A 2 480 3 HOH HOH . 
K 8 HOH A 3 481 5 HOH HOH . 
K 8 HOH A 4 482 7 HOH HOH . 
K 8 HOH A 5 483 8 HOH HOH . 
K 8 HOH A 6 484 11 HOH HOH . 
K 8 HOH A 7 485 12 HOH HOH . 
K 8 HOH A 8 486 13 HOH HOH . 
K 8 HOH A 9 487 14 HOH HOH . 
K 8 HOH A 10 488 17 HOH HOH . 
K 8 HOH A 11 489 18 HOH HOH . 
L 8 HOH B 1 481 2 HOH HOH . 
L 8 HOH B 2 482 4 HOH HOH . 
L 8 HOH B 3 483 6 HOH HOH . 
L 8 HOH B 4 484 9 HOH HOH . 
L 8 HOH B 5 485 10 HOH HOH . 
L 8 HOH B 6 486 15 HOH HOH . 
L 8 HOH B 7 487 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 3 -79.749 22.312 -13.356 1 23.03 ? PA FAD 500 A 1 
HETATM 2 O O1A FAD . . . D 3 -78.802 21.382 -12.641 1 23.7 ? O1A FAD 500 A 1 
HETATM 3 O O2A FAD . . . D 3 -80.992 22.607 -12.552 1 22.89 ? O2A FAD 500 A 1 
HETATM 4 O O5B FAD . . . D 3 -80.105 21.682 -14.799 1 22.98 ? O5B FAD 500 A 1 
HETATM 5 C C5B FAD . . . D 3 -79.286 20.682 -15.357 1 21.99 ? C5B FAD 500 A 1 
HETATM 6 C C4B FAD . . . D 3 -80.156 19.507 -15.77 1 22.28 ? C4B FAD 500 A 1 
HETATM 7 O O4B FAD . . . D 3 -79.387 18.678 -16.616 1 22.27 ? O4B FAD 500 A 1 
HETATM 8 C C3B FAD . . . D 3 -80.589 18.647 -14.584 1 22.46 ? C3B FAD 500 A 1 
HETATM 9 O O3B FAD . . . D 3 -81.982 18.393 -14.646 1 22.66 ? O3B FAD 500 A 1 
HETATM 10 C C2B FAD . . . D 3 -79.769 17.367 -14.707 1 21.81 ? C2B FAD 500 A 1 
HETATM 11 O O2B FAD . . . D 3 -80.459 16.211 -14.297 1 20.64 ? O2B FAD 500 A 1 
HETATM 12 C C1B FAD . . . D 3 -79.478 17.328 -16.197 1 21.84 ? C1B FAD 500 A 1 
HETATM 13 N N9A FAD . . . D 3 -78.258 16.576 -16.552 1 21.2 ? N9A FAD 500 A 1 
HETATM 14 C C8A FAD . . . D 3 -76.987 16.77 -16.071 1 20.46 ? C8A FAD 500 A 1 
HETATM 15 N N7A FAD . . . D 3 -76.158 15.954 -16.758 1 20.32 ? N7A FAD 500 A 1 
HETATM 16 C C5A FAD . . . D 3 -76.809 15.51 -17.86 1 20.29 ? C5A FAD 500 A 1 
HETATM 17 C C6A FAD . . . D 3 -76.427 14.736 -18.956 1 19.48 ? C6A FAD 500 A 1 
HETATM 18 N N6A FAD . . . D 3 -75.214 14.207 -19.029 1 18.91 ? N6A FAD 500 A 1 
HETATM 19 N N1A FAD . . . D 3 -77.386 14.327 -19.852 1 19.64 ? N1A FAD 500 A 1 
HETATM 20 C C2A FAD . . . D 3 -78.674 14.826 -19.78 1 20.23 ? C2A FAD 500 A 1 
HETATM 21 N N3A FAD . . . D 3 -79.061 15.565 -18.682 1 20.22 ? N3A FAD 500 A 1 
HETATM 22 C C4A FAD . . . D 3 -78.135 15.917 -17.748 1 20.72 ? C4A FAD 500 A 1 
HETATM 23 N N1 FAD . . . D 3 -81.133 29.477 -6.118 1 24.85 ? N1 FAD 500 A 1 
HETATM 24 C C2 FAD . . . D 3 -82.005 30.458 -5.674 1 25.91 ? C2 FAD 500 A 1 
HETATM 25 O O2 FAD . . . D 3 -82.31 31.393 -6.424 1 27.23 ? O2 FAD 500 A 1 
HETATM 26 N N3 FAD . . . D 3 -82.402 30.485 -4.348 1 24.94 ? N3 FAD 500 A 1 
HETATM 27 C C4 FAD . . . D 3 -81.953 29.51 -3.487 1 25 ? C4 FAD 500 A 1 
HETATM 28 O O4 FAD . . . D 3 -82.671 29.184 -2.546 1 25.95 ? O4 FAD 500 A 1 
HETATM 29 C C4X FAD . . . D 3 -80.903 28.677 -3.877 1 24.89 ? C4X FAD 500 A 1 
HETATM 30 N N5 FAD . . . D 3 -80.448 27.705 -3.002 1 24.78 ? N5 FAD 500 A 1 
HETATM 31 C C5X FAD . . . D 3 -80.019 26.488 -3.495 1 23.92 ? C5X FAD 500 A 1 
HETATM 32 C C6 FAD . . . D 3 -79.985 25.375 -2.66 1 23.65 ? C6 FAD 500 A 1 
HETATM 33 C C7 FAD . . . D 3 -79.432 24.182 -3.118 1 23.43 ? C7 FAD 500 A 1 
HETATM 34 C C7M FAD . . . D 3 -79.098 23.11 -2.116 1 22.96 ? C7M FAD 500 A 1 
HETATM 35 C C8 FAD . . . D 3 -79.269 24 -4.499 1 23.37 ? C8 FAD 500 A 1 
HETATM 36 C C8M FAD . . . D 3 -79.271 22.635 -5.135 1 22.85 ? C8M FAD 500 A 1 
HETATM 37 C C9 FAD . . . D 3 -79.369 25.106 -5.339 1 23.28 ? C9 FAD 500 A 1 
HETATM 38 C C9A FAD . . . D 3 -79.788 26.348 -4.86 1 23.5 ? C9A FAD 500 A 1 
HETATM 39 N N10 FAD . . . D 3 -79.947 27.447 -5.702 1 23.61 ? N10 FAD 500 A 1 
HETATM 40 C C10 FAD . . . D 3 -80.562 28.591 -5.227 1 24.24 ? C10 FAD 500 A 1 
HETATM 41 C C1' FAD . . . D 3 -79.3 27.484 -7.058 1 23.49 ? C1' FAD 500 A 1 
HETATM 42 C C2' FAD . . . D 3 -80.321 27.178 -8.155 1 23.91 ? C2' FAD 500 A 1 
HETATM 43 O O2' FAD . . . D 3 -80.988 25.973 -7.85 1 24.06 ? O2' FAD 500 A 1 
HETATM 44 C C3' FAD . . . D 3 -79.641 27.053 -9.518 1 23.63 ? C3' FAD 500 A 1 
HETATM 45 O O3' FAD . . . D 3 -79.031 28.276 -9.876 1 24.03 ? O3' FAD 500 A 1 
HETATM 46 C C4' FAD . . . D 3 -80.569 26.651 -10.659 1 22.93 ? C4' FAD 500 A 1 
HETATM 47 O O4' FAD . . . D 3 -81.564 25.744 -10.245 1 22.24 ? O4' FAD 500 A 1 
HETATM 48 C C5' FAD . . . D 3 -79.692 25.985 -11.703 1 23.06 ? C5' FAD 500 A 1 
HETATM 49 O O5' FAD . . . D 3 -80.439 25.513 -12.796 1 22.5 ? O5' FAD 500 A 1 
HETATM 50 P P FAD . . . D 3 -79.616 25.048 -14.094 1 22.57 ? P FAD 500 A 1 
HETATM 51 O O1P FAD . . . D 3 -80.571 24.813 -15.258 1 22.13 ? O1P FAD 500 A 1 
HETATM 52 O O2P FAD . . . D 3 -78.499 26.025 -14.413 1 22.13 ? O2P FAD 500 A 1 
HETATM 53 O O3P FAD . . . D 3 -78.924 23.667 -13.636 1 23.14 ? O3P FAD 500 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           53 
#