data_3L2B # _model_server_result.job_id t-3oY9_hqvBfhUxjJOg1TQ _model_server_result.datetime_utc '2024-11-15 13:48:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3L2B # _exptl.entry_id 3L2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 836.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L2B _cell.length_a 63.847 _cell.length_b 71.764 _cell.length_c 116.334 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 N10 O19 P4' _chem_comp.formula_weight 836.387 _chem_comp.id B4P _chem_comp.mon_nstd_flag . _chem_comp.name "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A B4P doub 70 n n PA O2A B4P sing 71 n n PA O3A B4P sing 72 n n PA O5E B4P sing 73 n n O2A HOA2 B4P sing 74 n n O3A PB B4P sing 75 n n PB O1B B4P doub 76 n n PB O2B B4P sing 77 n n PB O3B B4P sing 78 n n O2B HOB2 B4P sing 79 n n O3B PG B4P sing 80 n n PG O1G B4P doub 81 n n PG O2G B4P sing 82 n n PG O3G B4P sing 83 n n O2G HOG2 B4P sing 84 n n O3G PD B4P sing 85 n n PD O1D B4P doub 86 n n PD O2D B4P sing 87 n n PD O5F B4P sing 88 n n O2D HOD2 B4P sing 89 n n O5E C5E B4P sing 90 n n C5E C4E B4P sing 91 n n C5E H51A B4P sing 92 n n C5E H52A B4P sing 93 n n C4E O4E B4P sing 94 n n C4E C3E B4P sing 95 n n C4E H4E B4P sing 96 n n O4E C1E B4P sing 97 n n C3E O3E B4P sing 98 n n C3E C2E B4P sing 99 n n C3E H3E B4P sing 100 n n O3E HO3A B4P sing 101 n n C2E O2E B4P sing 102 n n C2E C1E B4P sing 103 n n C2E H2E B4P sing 104 n n O2E HO2A B4P sing 105 n n C1E N9A B4P sing 106 n n C1E H1E B4P sing 107 n n N9A C8A B4P sing 108 n y N9A C4A B4P sing 109 n y C8A N7A B4P doub 110 n y C8A H8A B4P sing 111 n n N7A C5A B4P sing 112 n y C5A C6A B4P sing 113 n y C5A C4A B4P doub 114 n y C6A N6A B4P sing 115 n n C6A N1A B4P doub 116 n y N6A H61A B4P sing 117 n n N6A H62A B4P sing 118 n n N1A C2A B4P sing 119 n y C2A N3A B4P doub 120 n y C2A H2A B4P sing 121 n n N3A C4A B4P sing 122 n y O5F C5F B4P sing 123 n n C5F C4F B4P sing 124 n n C5F H51B B4P sing 125 n n C5F H52B B4P sing 126 n n C4F O4F B4P sing 127 n n C4F C3F B4P sing 128 n n C4F H4F B4P sing 129 n n O4F C1F B4P sing 130 n n C3F O3F B4P sing 131 n n C3F C2F B4P sing 132 n n C3F H3F B4P sing 133 n n O3F HO3B B4P sing 134 n n C2F O2F B4P sing 135 n n C2F C1F B4P sing 136 n n C2F H2F B4P sing 137 n n O2F HO2B B4P sing 138 n n C1F N9B B4P sing 139 n n C1F H1F B4P sing 140 n n N9B C8B B4P sing 141 n y N9B C4B B4P sing 142 n y C8B N7B B4P doub 143 n y C8B H8B B4P sing 144 n n N7B C5B B4P sing 145 n y C5B C6B B4P sing 146 n y C5B C4B B4P doub 147 n y C6B N6B B4P sing 148 n n C6B N1B B4P doub 149 n y N6B H61B B4P sing 150 n n N6B H62B B4P sing 151 n n N1B C2B B4P sing 152 n y C2B N3B B4P doub 153 n y C2B H2B B4P sing 154 n n N3B C4B B4P sing 155 n y # _atom_sites.entry_id 3L2B _atom_sites.fract_transf_matrix[1][1] 0.015662 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B4P A 1 1 1 B4P B4P . D 3 HOH A 1 6 6 HOH HOH . D 3 HOH A 2 7 7 HOH HOH . D 3 HOH A 3 8 8 HOH HOH . D 3 HOH A 4 9 9 HOH HOH . D 3 HOH A 5 11 11 HOH HOH . D 3 HOH A 6 12 12 HOH HOH . D 3 HOH A 7 13 13 HOH HOH . D 3 HOH A 8 14 14 HOH HOH . D 3 HOH A 9 17 17 HOH HOH . D 3 HOH A 10 18 18 HOH HOH . D 3 HOH A 11 19 19 HOH HOH . D 3 HOH A 12 20 20 HOH HOH . D 3 HOH A 13 21 21 HOH HOH . D 3 HOH A 14 22 22 HOH HOH . D 3 HOH A 15 25 25 HOH HOH . D 3 HOH A 16 27 27 HOH HOH . D 3 HOH A 17 29 29 HOH HOH . D 3 HOH A 18 31 31 HOH HOH . D 3 HOH A 19 32 32 HOH HOH . D 3 HOH A 20 33 33 HOH HOH . D 3 HOH A 21 35 35 HOH HOH . D 3 HOH A 22 36 36 HOH HOH . D 3 HOH A 23 39 39 HOH HOH . D 3 HOH A 24 45 45 HOH HOH . D 3 HOH A 25 46 46 HOH HOH . D 3 HOH A 26 47 47 HOH HOH . D 3 HOH A 27 48 48 HOH HOH . D 3 HOH A 28 51 51 HOH HOH . D 3 HOH A 29 52 52 HOH HOH . D 3 HOH A 30 53 53 HOH HOH . D 3 HOH A 31 54 54 HOH HOH . D 3 HOH A 32 55 55 HOH HOH . D 3 HOH A 33 56 56 HOH HOH . D 3 HOH A 34 57 57 HOH HOH . D 3 HOH A 35 59 59 HOH HOH . D 3 HOH A 36 61 61 HOH HOH . D 3 HOH A 37 307 307 HOH HOH . D 3 HOH A 38 308 308 HOH HOH . D 3 HOH A 39 309 309 HOH HOH . D 3 HOH A 40 310 310 HOH HOH . D 3 HOH A 41 316 316 HOH HOH . E 3 HOH B 1 2 2 HOH HOH . E 3 HOH B 2 3 3 HOH HOH . E 3 HOH B 3 4 4 HOH HOH . E 3 HOH B 4 5 5 HOH HOH . E 3 HOH B 5 10 10 HOH HOH . E 3 HOH B 6 15 15 HOH HOH . E 3 HOH B 7 16 16 HOH HOH . E 3 HOH B 8 23 23 HOH HOH . E 3 HOH B 9 24 24 HOH HOH . E 3 HOH B 10 26 26 HOH HOH . E 3 HOH B 11 28 28 HOH HOH . E 3 HOH B 12 30 30 HOH HOH . E 3 HOH B 13 34 34 HOH HOH . E 3 HOH B 14 37 37 HOH HOH . E 3 HOH B 15 38 38 HOH HOH . E 3 HOH B 16 40 40 HOH HOH . E 3 HOH B 17 41 41 HOH HOH . E 3 HOH B 18 42 42 HOH HOH . E 3 HOH B 19 43 43 HOH HOH . E 3 HOH B 20 44 44 HOH HOH . E 3 HOH B 21 49 49 HOH HOH . E 3 HOH B 22 50 50 HOH HOH . E 3 HOH B 23 58 58 HOH HOH . E 3 HOH B 24 60 60 HOH HOH . E 3 HOH B 25 307 307 HOH HOH . E 3 HOH B 26 308 308 HOH HOH . E 3 HOH B 27 309 309 HOH HOH . E 3 HOH B 28 310 310 HOH HOH . E 3 HOH B 29 311 311 HOH HOH . E 3 HOH B 30 312 312 HOH HOH . E 3 HOH B 31 313 313 HOH HOH . E 3 HOH B 32 314 314 HOH HOH . E 3 HOH B 33 315 315 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA B4P . . . C 2 20.353 21.069 2.771 1 52.58 ? PA B4P 1 A 1 HETATM 2 O O1A B4P . . . C 2 19.595 22.022 3.586 1 56.52 ? O1A B4P 1 A 1 HETATM 3 O O2A B4P . . . C 2 21.196 21.731 1.592 1 59.37 ? O2A B4P 1 A 1 HETATM 4 O O3A B4P . . . C 2 21.194 20.207 3.8 1 53.06 ? O3A B4P 1 A 1 HETATM 5 P PB B4P . . . C 2 22.503 19.331 3.542 1 52.62 ? PB B4P 1 A 1 HETATM 6 O O1B B4P . . . C 2 23.67 20.188 3.275 1 55.51 ? O1B B4P 1 A 1 HETATM 7 O O2B B4P . . . C 2 22.228 18.229 2.427 1 55.97 ? O2B B4P 1 A 1 HETATM 8 O O3B B4P . . . C 2 22.595 18.621 4.976 1 54.03 ? O3B B4P 1 A 1 HETATM 9 P PG B4P . . . C 2 23.383 19.27 6.212 1 56.15 ? PG B4P 1 A 1 HETATM 10 O O1G B4P . . . C 2 23.062 20.715 6.262 1 57.4 ? O1G B4P 1 A 1 HETATM 11 O O2G B4P . . . C 2 23.15 18.471 7.562 1 55.77 ? O2G B4P 1 A 1 HETATM 12 O O3G B4P . . . C 2 24.92 19.004 5.854 1 58.28 ? O3G B4P 1 A 1 HETATM 13 P PD B4P . . . C 2 26.062 19.348 6.937 1 56.92 ? PD B4P 1 A 1 HETATM 14 O O1D B4P . . . C 2 27.32 19.675 6.247 1 54.44 ? O1D B4P 1 A 1 HETATM 15 O O2D B4P . . . C 2 25.553 20.498 7.938 1 56.97 ? O2D B4P 1 A 1 HETATM 16 O O5E B4P . . . C 2 19.292 20.107 2.072 1 53.12 ? O5E B4P 1 A 1 HETATM 17 C C5E B4P . . . C 2 18.592 19.134 2.851 1 51.19 ? C5E B4P 1 A 1 HETATM 18 C C4E B4P . . . C 2 17.859 18.221 1.876 1 49.11 ? C4E B4P 1 A 1 HETATM 19 O O4E B4P . . . C 2 17.079 19.007 0.984 1 49.03 ? O4E B4P 1 A 1 HETATM 20 C C3E B4P . . . C 2 18.833 17.466 1.001 1 48.41 ? C3E B4P 1 A 1 HETATM 21 O O3E B4P . . . C 2 19.011 16.173 1.514 1 43.33 ? O3E B4P 1 A 1 HETATM 22 C C2E B4P . . . C 2 18.224 17.46 -0.377 1 49.7 ? C2E B4P 1 A 1 HETATM 23 O O2E B4P . . . C 2 17.423 16.308 -0.559 1 50.57 ? O2E B4P 1 A 1 HETATM 24 C C1E B4P . . . C 2 17.326 18.669 -0.408 1 50.03 ? C1E B4P 1 A 1 HETATM 25 N N9A B4P . . . C 2 18.013 19.71 -1.216 1 48.22 ? N9A B4P 1 A 1 HETATM 26 C C8A B4P . . . C 2 19.313 20.085 -1.105 1 48.6 ? C8A B4P 1 A 1 HETATM 27 N N7A B4P . . . C 2 19.628 21.051 -2.017 1 48.47 ? N7A B4P 1 A 1 HETATM 28 C C5A B4P . . . C 2 18.523 21.313 -2.726 1 48.14 ? C5A B4P 1 A 1 HETATM 29 C C6A B4P . . . C 2 18.158 22.205 -3.827 1 49.87 ? C6A B4P 1 A 1 HETATM 30 N N6A B4P . . . C 2 19.047 23.049 -4.357 1 50.4 ? N6A B4P 1 A 1 HETATM 31 N N1A B4P . . . C 2 16.895 22.156 -4.307 1 54.24 ? N1A B4P 1 A 1 HETATM 32 C C2A B4P . . . C 2 15.981 21.323 -3.777 1 51.64 ? C2A B4P 1 A 1 HETATM 33 N N3A B4P . . . C 2 16.253 20.478 -2.781 1 51.24 ? N3A B4P 1 A 1 HETATM 34 C C4A B4P . . . C 2 17.473 20.412 -2.212 1 49.57 ? C4A B4P 1 A 1 HETATM 35 O O5F B4P . . . C 2 26.177 17.96 7.699 1 57.01 ? O5F B4P 1 A 1 HETATM 36 C C5F B4P . . . C 2 26.529 16.801 6.964 1 55.75 ? C5F B4P 1 A 1 HETATM 37 C C4F B4P . . . C 2 26.535 15.634 7.916 1 50.65 ? C4F B4P 1 A 1 HETATM 38 O O4F B4P . . . C 2 27.588 15.816 8.869 1 50.59 ? O4F B4P 1 A 1 HETATM 39 C C3F B4P . . . C 2 25.229 15.549 8.672 1 51.1 ? C3F B4P 1 A 1 HETATM 40 O O3F B4P . . . C 2 24.37 14.567 8.087 1 51.56 ? O3F B4P 1 A 1 HETATM 41 C C2F B4P . . . C 2 25.653 15.152 10.078 1 49.63 ? C2F B4P 1 A 1 HETATM 42 O O2F B4P . . . C 2 25.622 13.741 10.121 1 48.76 ? O2F B4P 1 A 1 HETATM 43 C C1F B4P . . . C 2 27.086 15.672 10.204 1 49.74 ? C1F B4P 1 A 1 HETATM 44 N N9B B4P . . . C 2 27.027 16.935 10.968 1 49.41 ? N9B B4P 1 A 1 HETATM 45 C C8B B4P . . . C 2 26.12 17.925 10.851 1 49.32 ? C8B B4P 1 A 1 HETATM 46 N N7B B4P . . . C 2 26.366 18.903 11.756 1 49.03 ? N7B B4P 1 A 1 HETATM 47 C C5B B4P . . . C 2 27.435 18.548 12.475 1 50.11 ? C5B B4P 1 A 1 HETATM 48 C C6B B4P . . . C 2 28.209 19.127 13.589 1 49.87 ? C6B B4P 1 A 1 HETATM 49 N N6B B4P . . . C 2 27.878 20.319 14.12 1 49.87 ? N6B B4P 1 A 1 HETATM 50 N N1B B4P . . . C 2 29.253 18.428 14.052 1 51.41 ? N1B B4P 1 A 1 HETATM 51 C C2B B4P . . . C 2 29.602 17.242 13.536 1 53.18 ? C2B B4P 1 A 1 HETATM 52 N N3B B4P . . . C 2 28.936 16.648 12.535 1 52.25 ? N3B B4P 1 A 1 HETATM 53 C C4B B4P . . . C 2 27.859 17.245 11.966 1 51.57 ? C4B B4P 1 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #