data_3L2U # _model_server_result.job_id Ioi3DthYhM9CznsV0vYa7Q _model_server_result.datetime_utc '2024-11-08 03:59:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":396}' # _entry.id 3L2U # _exptl.entry_id 3L2U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 18.038 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMMONIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L2U _cell.length_a 157.1 _cell.length_b 157.1 _cell.length_c 124.53 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -62.265 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 65 A HIS 62 1_555 E ZN ZN . A ZN 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? metalc ? metalc2 A ND1 HIS 69 A HIS 66 1_555 E ZN ZN . A ZN 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc3 A SG CYS 99 A CYS 96 1_555 E ZN ZN . A ZN 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc4 A SG CYS 102 A CYS 99 1_555 E ZN ZN . A ZN 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc5 A OD1 ASP 131 A ASP 128 1_555 F MG MG . A MG 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc6 A OD2 ASP 131 A ASP 128 1_555 G MG MG . A MG 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc7 A OD1 ASP 188 A ASP 185 1_555 F MG MG . A MG 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc8 A OE1 GLU 224 A GLU 221 1_555 G MG MG . A MG 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc9 A OE2 GLU 224 A GLU 221 1_555 G MG MG . A MG 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc10 F MG MG . A MG 394 1_555 I OAG ELV . A ELV 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc11 F MG MG . A MG 394 1_555 I OAD ELV . A ELV 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc12 G MG MG . A MG 395 1_555 I OAD ELV . A ELV 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc13 G MG MG . A MG 395 1_555 I OAE ELV . A ELV 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc14 B OD1 ASP 131 B ASP 128 1_555 N MG MG . B MG 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? hydrog WATSON-CRICK hydrog1 C N1 DG 4 C DG 4 1_555 D N3 DC 16 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N2 DG 4 C DG 4 1_555 D O2 DC 16 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O6 DG 4 C DG 4 1_555 D N4 DC 16 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N3 DT 5 C DT 5 1_555 D N1 DA 15 D DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O4 DT 5 C DT 5 1_555 D N6 DA 15 D DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 DC 6 C DC 6 1_555 D N1 DG 14 D DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N4 DC 6 C DC 6 1_555 D O6 DG 14 D DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O2 DC 6 C DC 6 1_555 D N2 DG 14 D DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N1 DA 7 C DA 7 1_555 D N3 DT 13 D DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N6 DA 7 C DA 7 1_555 D O4 DT 13 D DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N3 DT 8 C DT 8 1_555 D N1 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O4 DT 8 C DT 8 1_555 D N6 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 DG 9 C DG 9 1_555 D N3 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N2 DG 9 C DG 9 1_555 D O2 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O6 DG 9 C DG 9 1_555 D N4 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N1 DG 10 C DG 10 1_555 D N3 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N2 DG 10 C DG 10 1_555 D O2 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O6 DG 10 C DG 10 1_555 D N4 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N1 DA 11 C DA 11 1_555 D N3 DT 9 D DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N6 DA 11 C DA 11 1_555 D O4 DT 9 D DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N1 DA 12 C DA 12 1_555 D N3 DT 8 D DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N6 DA 12 C DA 12 1_555 D O4 DT 8 D DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N3 DT 13 C DT 13 1_555 D N1 DA 7 D DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C O4 DT 13 C DT 13 1_555 D N6 DA 7 D DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N3 DT 14 C DT 14 1_555 D N1 DA 6 D DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C O4 DT 14 C DT 14 1_555 D N6 DA 6 D DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N3 DT 15 C DT 15 1_555 D N1 DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C O4 DT 15 C DT 15 1_555 D N6 DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N3 DT 16 C DT 16 1_555 D N1 DA 4 D DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C O4 DT 16 C DT 16 1_555 D N6 DA 4 D DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N1 DG 17 C DG 17 1_555 D N3 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N2 DG 17 C DG 17 1_555 D O2 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C O6 DG 17 C DG 17 1_555 D N4 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C N3 DT 18 C DT 18 1_555 D N1 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C O4 DT 18 C DT 18 1_555 D N6 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog36 C N1 DA 19 C DA 19 1_555 D N3 DT 1 D DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'H4 N 1' _chem_comp.formula_weight 18.038 _chem_comp.id NH4 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMMONIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N HN1 NH4 sing 453 n n N HN2 NH4 sing 454 n n N HN3 NH4 sing 455 n n N HN4 NH4 sing 456 n n # _atom_sites.entry_id 3L2U _atom_sites.fract_transf_matrix[1][1] 0.006365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN A 1 393 1 ZN ZN . F 5 MG A 1 394 2 MG MG . G 5 MG A 1 395 3 MG MG . H 6 NH4 A 1 396 5 NH4 NH4 . I 7 ELV A 1 397 1 ELV ELV . J 8 GOL A 1 801 801 GOL GOL . K 8 GOL A 1 802 802 GOL GOL . L 8 GOL A 1 803 803 GOL GOL . M 8 GOL A 1 804 804 GOL GOL . N 5 MG B 1 393 4 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol N _atom_site.label_atom_id N _atom_site.label_comp_id NH4 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x -54.388 _atom_site.Cartn_y 38.215 _atom_site.Cartn_z -8.146 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id N _atom_site.auth_comp_id NH4 _atom_site.auth_seq_id 396 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #