data_3L3A # _model_server_result.job_id kDldrtB0KfiNK8Tq6l3CVA _model_server_result.datetime_utc '2024-12-21 18:22:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3L3A # _exptl.entry_id 3L3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-{1-[(6-aminopyridin-2-yl)methyl]-5-(2-chlorophenyl)-1H-pyrrol-2-yl}phenoxy)butanenitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.88 _cell.angle_gamma 90 _cell.entry_id 3L3A _cell.length_a 72.227 _cell.length_b 103.252 _cell.length_c 49.784 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 217 1_555 A SG CYS 375 A CYS 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 233 A CYS 279 1_555 A SG CYS 398 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 285 A CYS 331 1_555 A SG CYS 335 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C26 H23 Cl N4 O' _chem_comp.formula_weight 442.94 _chem_comp.id 625 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-{1-[(6-aminopyridin-2-yl)methyl]-5-(2-chlorophenyl)-1H-pyrrol-2-yl}phenoxy)butanenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 625 trip 1 n n C1 C23 625 sing 2 n n O1 C17 625 sing 3 n n O1 C26 625 sing 4 n n CL1 C18 625 sing 5 n n C2 C3 625 doub 6 n y C2 C5 625 sing 7 n y N2 C21 625 doub 8 n y N2 C22 625 sing 9 n y C3 C10 625 sing 10 n y N3 C19 625 sing 11 n y N3 C20 625 sing 12 n y N3 C24 625 sing 13 n n C4 C13 625 doub 14 n y C4 C14 625 sing 15 n y N4 C22 625 sing 16 n n C5 C16 625 doub 17 n y C6 C8 625 doub 18 n y C6 C15 625 sing 19 n y C7 C9 625 sing 20 n y C7 C15 625 doub 21 n y C8 C17 625 sing 22 n y C9 C17 625 doub 23 n y C10 C18 625 doub 24 n y C11 C12 625 sing 25 n y C11 C19 625 doub 26 n y C12 C20 625 doub 27 n y C13 C21 625 sing 28 n y C14 C22 625 doub 29 n y C15 C19 625 sing 30 n y C16 C18 625 sing 31 n y C16 C20 625 sing 32 n y C21 C24 625 sing 33 n n C23 C25 625 sing 34 n n C25 C26 625 sing 35 n n C2 H2 625 sing 36 n n C3 H3 625 sing 37 n n C4 H4 625 sing 38 n n N4 HN4 625 sing 39 n n N4 HN4A 625 sing 40 n n C5 H5 625 sing 41 n n C6 H6 625 sing 42 n n C7 H7 625 sing 43 n n C8 H8 625 sing 44 n n C9 H9 625 sing 45 n n C10 H10 625 sing 46 n n C11 H11 625 sing 47 n n C12 H12 625 sing 48 n n C13 H13 625 sing 49 n n C14 H14 625 sing 50 n n C23 H23 625 sing 51 n n C23 H23A 625 sing 52 n n C24 H24 625 sing 53 n n C24 H24A 625 sing 54 n n C25 H25 625 sing 55 n n C25 H25A 625 sing 56 n n C26 H26 625 sing 57 n n C26 H26A 625 sing 58 n n # _atom_sites.entry_id 3L3A _atom_sites.fract_transf_matrix[1][1] 0.013845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001182 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 625 A 1 1 1 625 625 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 31 31 HOH HOH . C 3 HOH A 30 32 32 HOH HOH . C 3 HOH A 31 33 33 HOH HOH . C 3 HOH A 32 34 34 HOH HOH . C 3 HOH A 33 35 35 HOH HOH . C 3 HOH A 34 36 36 HOH HOH . C 3 HOH A 35 37 37 HOH HOH . C 3 HOH A 36 38 38 HOH HOH . C 3 HOH A 37 39 39 HOH HOH . C 3 HOH A 38 40 40 HOH HOH . C 3 HOH A 39 41 41 HOH HOH . C 3 HOH A 40 42 42 HOH HOH . C 3 HOH A 41 43 43 HOH HOH . C 3 HOH A 42 44 44 HOH HOH . C 3 HOH A 43 45 45 HOH HOH . C 3 HOH A 44 46 46 HOH HOH . C 3 HOH A 45 462 1 HOH HOH . C 3 HOH A 46 463 47 HOH HOH . C 3 HOH A 47 464 48 HOH HOH . C 3 HOH A 48 465 49 HOH HOH . C 3 HOH A 49 466 50 HOH HOH . C 3 HOH A 50 467 51 HOH HOH . C 3 HOH A 51 468 52 HOH HOH . C 3 HOH A 52 469 53 HOH HOH . C 3 HOH A 53 470 54 HOH HOH . C 3 HOH A 54 471 55 HOH HOH . C 3 HOH A 55 472 56 HOH HOH . C 3 HOH A 56 473 58 HOH HOH . C 3 HOH A 57 474 59 HOH HOH . C 3 HOH A 58 475 61 HOH HOH . C 3 HOH A 59 476 62 HOH HOH . C 3 HOH A 60 477 64 HOH HOH . C 3 HOH A 61 478 65 HOH HOH . C 3 HOH A 62 479 67 HOH HOH . C 3 HOH A 63 480 68 HOH HOH . C 3 HOH A 64 481 69 HOH HOH . C 3 HOH A 65 482 70 HOH HOH . C 3 HOH A 66 483 71 HOH HOH . C 3 HOH A 67 484 72 HOH HOH . C 3 HOH A 68 485 74 HOH HOH . C 3 HOH A 69 486 75 HOH HOH . C 3 HOH A 70 487 76 HOH HOH . C 3 HOH A 71 488 77 HOH HOH . C 3 HOH A 72 489 78 HOH HOH . C 3 HOH A 73 490 79 HOH HOH . C 3 HOH A 74 491 80 HOH HOH . C 3 HOH A 75 492 81 HOH HOH . C 3 HOH A 76 493 83 HOH HOH . C 3 HOH A 77 494 84 HOH HOH . C 3 HOH A 78 495 85 HOH HOH . C 3 HOH A 79 496 86 HOH HOH . C 3 HOH A 80 497 87 HOH HOH . C 3 HOH A 81 498 88 HOH HOH . C 3 HOH A 82 499 89 HOH HOH . C 3 HOH A 83 500 90 HOH HOH . C 3 HOH A 84 501 91 HOH HOH . C 3 HOH A 85 502 92 HOH HOH . C 3 HOH A 86 503 93 HOH HOH . C 3 HOH A 87 504 95 HOH HOH . C 3 HOH A 88 505 96 HOH HOH . C 3 HOH A 89 506 97 HOH HOH . C 3 HOH A 90 507 98 HOH HOH . C 3 HOH A 91 508 99 HOH HOH . C 3 HOH A 92 509 100 HOH HOH . C 3 HOH A 93 510 101 HOH HOH . C 3 HOH A 94 511 102 HOH HOH . C 3 HOH A 95 512 103 HOH HOH . C 3 HOH A 96 513 104 HOH HOH . C 3 HOH A 97 514 107 HOH HOH . C 3 HOH A 98 515 108 HOH HOH . C 3 HOH A 99 516 109 HOH HOH . C 3 HOH A 100 517 111 HOH HOH . C 3 HOH A 101 518 112 HOH HOH . C 3 HOH A 102 519 113 HOH HOH . C 3 HOH A 103 520 114 HOH HOH . C 3 HOH A 104 521 115 HOH HOH . C 3 HOH A 105 522 118 HOH HOH . C 3 HOH A 106 523 119 HOH HOH . C 3 HOH A 107 524 120 HOH HOH . C 3 HOH A 108 525 121 HOH HOH . C 3 HOH A 109 526 122 HOH HOH . C 3 HOH A 110 527 123 HOH HOH . C 3 HOH A 111 528 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 625 . . . B 2 9.834 -1.663 13.387 1 33.94 ? C1 625 1 A 1 HETATM 2 N N1 625 . . . B 2 10.477 -1.502 12.429 1 35.37 ? N1 625 1 A 1 HETATM 3 O O1 625 . . . B 2 9.31 -5.412 15.115 1 46.64 ? O1 625 1 A 1 HETATM 4 CL CL1 625 . . . B 2 15.149 -12.33 15.485 1 63.26 ? CL1 625 1 A 1 HETATM 5 C C2 625 . . . B 2 17.938 -11.577 18.963 1 52.74 ? C2 625 1 A 1 HETATM 6 N N2 625 . . . B 2 15.471 -6.91 15.419 1 33.09 ? N2 625 1 A 1 HETATM 7 C C3 625 . . . B 2 18.337 -12.351 17.872 1 49.99 ? C3 625 1 A 1 HETATM 8 N N3 625 . . . B 2 13.925 -9.647 17.198 1 41.53 ? N3 625 1 A 1 HETATM 9 C C4 625 . . . B 2 15.593 -6.093 18.076 1 44.19 ? C4 625 1 A 1 HETATM 10 N N4 625 . . . B 2 16.272 -4.831 14.703 1 25.15 ? N4 625 1 A 1 HETATM 11 C C5 625 . . . B 2 16.662 -11.017 19.004 1 41.68 ? C5 625 1 A 1 HETATM 12 C C6 625 . . . B 2 12.263 -7.083 16.445 1 41.26 ? C6 625 1 A 1 HETATM 13 C C7 625 . . . B 2 10.388 -8.533 16.853 1 41.68 ? C7 625 1 A 1 HETATM 14 C C8 625 . . . B 2 11.421 -6.148 15.838 1 35.4 ? C8 625 1 A 1 HETATM 15 C C9 625 . . . B 2 9.541 -7.596 16.245 1 40.87 ? C9 625 1 A 1 HETATM 16 C C10 625 . . . B 2 17.461 -12.567 16.81 1 46.32 ? C10 625 1 A 1 HETATM 17 C C11 625 . . . B 2 12.371 -10.019 18.744 1 50.8 ? C11 625 1 A 1 HETATM 18 C C12 625 . . . B 2 13.486 -10.839 19.03 1 46.18 ? C12 625 1 A 1 HETATM 19 C C13 625 . . . B 2 15.154 -7.371 17.761 1 45.07 ? C13 625 1 A 1 HETATM 20 C C14 625 . . . B 2 15.972 -5.225 17.056 1 37.09 ? C14 625 1 A 1 HETATM 21 C C15 625 . . . B 2 11.765 -8.286 16.962 1 41.29 ? C15 625 1 A 1 HETATM 22 C C16 625 . . . B 2 15.765 -11.222 17.943 1 45.4 ? C16 625 1 A 1 HETATM 23 C C17 625 . . . B 2 10.048 -6.398 15.73 1 42.22 ? C17 625 1 A 1 HETATM 24 C C18 625 . . . B 2 16.177 -12.007 16.843 1 48.6 ? C18 625 1 A 1 HETATM 25 C C19 625 . . . B 2 12.644 -9.272 17.609 1 43.26 ? C19 625 1 A 1 HETATM 26 C C20 625 . . . B 2 14.441 -10.603 18.06 1 46.94 ? C20 625 1 A 1 HETATM 27 C C21 625 . . . B 2 15.112 -7.741 16.422 1 42.42 ? C21 625 1 A 1 HETATM 28 C C22 625 . . . B 2 15.893 -5.669 15.738 1 31.7 ? C22 625 1 A 1 HETATM 29 C C23 625 . . . B 2 9.021 -1.822 14.608 1 30.69 ? C23 625 1 A 1 HETATM 30 C C24 625 . . . B 2 14.641 -9.114 16.047 1 37.3 ? C24 625 1 A 1 HETATM 31 C C25 625 . . . B 2 8.441 -3.225 14.766 1 33.5 ? C25 625 1 A 1 HETATM 32 C C26 625 . . . B 2 9.286 -4.1 15.689 1 38.33 ? C26 625 1 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #