data_3L3L # _model_server_result.job_id 9ex40B0Hh1kfS3BiB1qXqg _model_server_result.datetime_utc '2024-10-18 15:32:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":351}' # _entry.id 3L3L # _exptl.entry_id 3L3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 259.304 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-oxo-2-piperidin-4-yl-2,3-dihydro-1H-isoindole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3L3L _cell.length_a 94.023 _cell.length_b 94.023 _cell.length_c 68.773 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 162.852613 0 3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -141.0345 81.426307 0 4 'crystal symmetry operation' 4_466 y-1,x+1,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -141.0345 81.426307 68.773 5 'crystal symmetry operation' 5_676 x-y+1,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 162.852613 68.773 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 68.773 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H17 N3 O2' _chem_comp.formula_weight 259.304 _chem_comp.id L3L _chem_comp.mon_nstd_flag . _chem_comp.name 3-oxo-2-piperidin-4-yl-2,3-dihydro-1H-isoindole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 L3L doub 173 n y C1 C3 L3L sing 174 n y C1 H1 L3L sing 175 n n C2 C5 L3L sing 176 n y C2 H2 L3L sing 177 n n C3 C6 L3L doub 178 n y C3 H3 L3L sing 179 n n C4 C5 L3L doub 180 n y C4 C6 L3L sing 181 n y C4 C7 L3L sing 182 n n C5 C8 L3L sing 183 n n C6 C9 L3L sing 184 n n C7 N16 L3L sing 185 n n C7 O18 L3L doub 186 n n C8 N17 L3L sing 187 n n C8 O19 L3L doub 188 n n C9 N16 L3L sing 189 n n C10 C12 L3L sing 190 n n C10 C14 L3L sing 191 n n C10 H10 L3L sing 192 n n C10 H10A L3L sing 193 n n C11 C13 L3L sing 194 n n C11 C14 L3L sing 195 n n C11 H11 L3L sing 196 n n C11 H11A L3L sing 197 n n C12 N15 L3L sing 198 n n C12 H12 L3L sing 199 n n C12 H12A L3L sing 200 n n C13 N15 L3L sing 201 n n C13 H13 L3L sing 202 n n C13 H13A L3L sing 203 n n C14 N16 L3L sing 204 n n C14 H14 L3L sing 205 n n N15 HN15 L3L sing 206 n n N17 HN17 L3L sing 207 n n N17 HN1A L3L sing 208 n n C9 H9 L3L sing 209 n n C9 H17 L3L sing 210 n n # _atom_sites.entry_id 3L3L _atom_sites.fract_transf_matrix[1][1] 0.010636 _atom_sites.fract_transf_matrix[1][2] 0.006141 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L3L A 1 351 1 L3L LIG . C 3 HOH A 1 352 1 HOH WAT . C 3 HOH A 2 353 2 HOH WAT . C 3 HOH A 3 354 3 HOH WAT . C 3 HOH A 4 355 4 HOH WAT . C 3 HOH A 5 356 5 HOH WAT . C 3 HOH A 6 357 6 HOH WAT . C 3 HOH A 7 358 7 HOH WAT . C 3 HOH A 8 359 8 HOH WAT . C 3 HOH A 9 360 9 HOH WAT . C 3 HOH A 10 361 10 HOH WAT . C 3 HOH A 11 362 11 HOH WAT . C 3 HOH A 12 363 12 HOH WAT . C 3 HOH A 13 364 13 HOH WAT . C 3 HOH A 14 365 14 HOH WAT . C 3 HOH A 15 366 15 HOH WAT . C 3 HOH A 16 367 16 HOH WAT . C 3 HOH A 17 368 17 HOH WAT . C 3 HOH A 18 369 18 HOH WAT . C 3 HOH A 19 370 19 HOH WAT . C 3 HOH A 20 371 20 HOH WAT . C 3 HOH A 21 372 21 HOH WAT . C 3 HOH A 22 373 22 HOH WAT . C 3 HOH A 23 374 23 HOH WAT . C 3 HOH A 24 375 24 HOH WAT . C 3 HOH A 25 376 25 HOH WAT . C 3 HOH A 26 377 26 HOH WAT . C 3 HOH A 27 378 27 HOH WAT . C 3 HOH A 28 379 28 HOH WAT . C 3 HOH A 29 380 29 HOH WAT . C 3 HOH A 30 381 30 HOH WAT . C 3 HOH A 31 382 31 HOH WAT . C 3 HOH A 32 383 32 HOH WAT . C 3 HOH A 33 384 33 HOH WAT . C 3 HOH A 34 385 34 HOH WAT . C 3 HOH A 35 386 35 HOH WAT . C 3 HOH A 36 387 36 HOH WAT . C 3 HOH A 37 388 37 HOH WAT . C 3 HOH A 38 389 38 HOH WAT . C 3 HOH A 39 390 39 HOH WAT . C 3 HOH A 40 391 40 HOH WAT . C 3 HOH A 41 392 41 HOH WAT . C 3 HOH A 42 393 42 HOH WAT . C 3 HOH A 43 394 43 HOH WAT . C 3 HOH A 44 395 44 HOH WAT . C 3 HOH A 45 396 45 HOH WAT . C 3 HOH A 46 397 46 HOH WAT . C 3 HOH A 47 398 47 HOH WAT . C 3 HOH A 48 399 48 HOH WAT . C 3 HOH A 49 400 49 HOH WAT . C 3 HOH A 50 401 50 HOH WAT . C 3 HOH A 51 402 51 HOH WAT . C 3 HOH A 52 403 52 HOH WAT . C 3 HOH A 53 404 53 HOH WAT . C 3 HOH A 54 405 54 HOH WAT . C 3 HOH A 55 406 55 HOH WAT . C 3 HOH A 56 407 56 HOH WAT . C 3 HOH A 57 408 57 HOH WAT . C 3 HOH A 58 409 58 HOH WAT . C 3 HOH A 59 410 59 HOH WAT . C 3 HOH A 60 411 60 HOH WAT . C 3 HOH A 61 412 61 HOH WAT . C 3 HOH A 62 413 62 HOH WAT . C 3 HOH A 63 414 63 HOH WAT . C 3 HOH A 64 415 64 HOH WAT . C 3 HOH A 65 416 65 HOH WAT . C 3 HOH A 66 417 66 HOH WAT . C 3 HOH A 67 418 67 HOH WAT . C 3 HOH A 68 419 68 HOH WAT . C 3 HOH A 69 420 69 HOH WAT . C 3 HOH A 70 421 70 HOH WAT . C 3 HOH A 71 422 71 HOH WAT . C 3 HOH A 72 423 72 HOH WAT . C 3 HOH A 73 424 73 HOH WAT . C 3 HOH A 74 425 74 HOH WAT . C 3 HOH A 75 426 75 HOH WAT . C 3 HOH A 76 427 76 HOH WAT . C 3 HOH A 77 428 77 HOH WAT . C 3 HOH A 78 429 78 HOH WAT . C 3 HOH A 79 430 79 HOH WAT . C 3 HOH A 80 431 80 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 L3L . . . B 2 -28.708 65.112 24.291 1 17.42 ? C1 L3L 351 A 1 HETATM 2 C C2 L3L . . . B 2 -27.841 65.955 23.621 1 35.02 ? C2 L3L 351 A 1 HETATM 3 C C3 L3L . . . B 2 -28.264 64.335 25.342 1 27.82 ? C3 L3L 351 A 1 HETATM 4 C C4 L3L . . . B 2 -26.072 65.225 25.019 1 28.94 ? C4 L3L 351 A 1 HETATM 5 C C5 L3L . . . B 2 -26.512 66.022 23.98 1 26.17 ? C5 L3L 351 A 1 HETATM 6 C C6 L3L . . . B 2 -26.934 64.4 25.688 1 51.02 ? C6 L3L 351 A 1 HETATM 7 C C7 L3L . . . B 2 -24.741 65.073 25.617 1 42.68 ? C7 L3L 351 A 1 HETATM 8 C C8 L3L . . . B 2 -25.67 66.95 23.216 1 33.95 ? C8 L3L 351 A 1 HETATM 9 C C9 L3L . . . B 2 -26.255 63.659 26.781 1 39.46 ? C9 L3L 351 A 1 HETATM 10 C C10 L3L . . . B 2 -23.355 62.467 27.214 1 29.2 ? C10 L3L 351 A 1 HETATM 11 C C11 L3L . . . B 2 -24.277 63.838 29.015 1 86.53 ? C11 L3L 351 A 1 HETATM 12 C C12 L3L . . . B 2 -22.183 62.154 28.11 1 57.76 ? C12 L3L 351 A 1 HETATM 13 C C13 L3L . . . B 2 -23.085 63.446 29.853 1 42.49 ? C13 L3L 351 A 1 HETATM 14 C C14 L3L . . . B 2 -23.864 63.841 27.566 1 47.06 ? C14 L3L 351 A 1 HETATM 15 N N15 L3L . . . B 2 -22.664 62.106 29.477 1 42.21 ? N15 L3L 351 A 1 HETATM 16 N N16 L3L . . . B 2 -24.94 64.25 26.702 1 63.61 ? N16 L3L 351 A 1 HETATM 17 N N17 L3L . . . B 2 -24.329 66.895 23.485 1 42.08 ? N17 L3L 351 A 1 HETATM 18 O O18 L3L . . . B 2 -23.692 65.538 25.191 1 23.08 ? O18 L3L 351 A 1 HETATM 19 O O19 L3L . . . B 2 -26.205 67.703 22.416 1 23.1 ? O19 L3L 351 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #