data_3L3M # _model_server_result.job_id LCaM64Kn00Hl4DmO-b1z8g _model_server_result.datetime_utc '2024-11-05 16:19:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":351}' # _entry.id 3L3M # _exptl.entry_id 3L3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.379 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{2-fluoro-4-[(2S)-piperidin-2-yl]phenyl}-1H-benzimidazole-7-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3L3M _cell.length_a 94.205 _cell.length_b 94.205 _cell.length_c 68.856 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H19 F N4 O' _chem_comp.formula_weight 338.379 _chem_comp.id A92 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-fluoro-4-[(2S)-piperidin-2-yl]phenyl}-1H-benzimidazole-7-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C12 A92 sing 1 n n C1 C3 A92 doub 2 n y C1 C5 A92 sing 3 n y C2 C4 A92 doub 4 n y C2 C7 A92 sing 5 n y C3 C8 A92 sing 6 n y C4 C9 A92 sing 7 n y C5 C11 A92 doub 8 n y C6 C9 A92 doub 9 n y C6 C12 A92 sing 10 n y C7 C12 A92 doub 11 n y C7 C13 A92 sing 12 n y C8 C10 A92 doub 13 n y C8 C14 A92 sing 14 n n C9 C19 A92 sing 15 n n C10 C11 A92 sing 16 n y C10 N20 A92 sing 17 n y C11 N21 A92 sing 18 n y C13 N20 A92 sing 19 n y C13 N21 A92 doub 20 n y C14 N23 A92 sing 21 n n C14 O24 A92 doub 22 n n C15 C16 A92 sing 23 n n C15 C17 A92 sing 24 n n C16 C18 A92 sing 25 n n C17 C19 A92 sing 26 n n C18 N22 A92 sing 27 n n C19 N22 A92 sing 28 n n C1 H1 A92 sing 29 n n C2 H2 A92 sing 30 n n C3 H3 A92 sing 31 n n C4 H4 A92 sing 32 n n C5 H5 A92 sing 33 n n C6 H6 A92 sing 34 n n C15 H15 A92 sing 35 n n C15 H15A A92 sing 36 n n C16 H16 A92 sing 37 n n C16 H16A A92 sing 38 n n C17 H17 A92 sing 39 n n C17 H17A A92 sing 40 n n C18 H18 A92 sing 41 n n C18 H18A A92 sing 42 n n C19 H19 A92 sing 43 n n N20 HN20 A92 sing 44 n n N22 HN22 A92 sing 45 n n N23 HN23 A92 sing 46 n n N23 HN2A A92 sing 47 n n # _atom_sites.entry_id 3L3M _atom_sites.fract_transf_matrix[1][1] 0.010615 _atom_sites.fract_transf_matrix[1][2] 0.006129 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A92 A 1 351 1 A92 A92 . C 3 HOH A 1 352 1 HOH HOH . C 3 HOH A 2 353 2 HOH HOH . C 3 HOH A 3 354 3 HOH HOH . C 3 HOH A 4 355 4 HOH HOH . C 3 HOH A 5 356 5 HOH HOH . C 3 HOH A 6 357 6 HOH HOH . C 3 HOH A 7 358 7 HOH HOH . C 3 HOH A 8 359 8 HOH HOH . C 3 HOH A 9 360 9 HOH HOH . C 3 HOH A 10 361 10 HOH HOH . C 3 HOH A 11 362 11 HOH HOH . C 3 HOH A 12 363 12 HOH HOH . C 3 HOH A 13 364 13 HOH HOH . C 3 HOH A 14 365 14 HOH HOH . C 3 HOH A 15 366 15 HOH HOH . C 3 HOH A 16 367 16 HOH HOH . C 3 HOH A 17 368 17 HOH HOH . C 3 HOH A 18 369 18 HOH HOH . C 3 HOH A 19 370 19 HOH HOH . C 3 HOH A 20 371 20 HOH HOH . C 3 HOH A 21 372 21 HOH HOH . C 3 HOH A 22 373 22 HOH HOH . C 3 HOH A 23 374 23 HOH HOH . C 3 HOH A 24 375 24 HOH HOH . C 3 HOH A 25 376 25 HOH HOH . C 3 HOH A 26 377 26 HOH HOH . C 3 HOH A 27 378 27 HOH HOH . C 3 HOH A 28 379 28 HOH HOH . C 3 HOH A 29 380 29 HOH HOH . C 3 HOH A 30 381 30 HOH HOH . C 3 HOH A 31 382 31 HOH HOH . C 3 HOH A 32 383 32 HOH HOH . C 3 HOH A 33 384 33 HOH HOH . C 3 HOH A 34 385 34 HOH HOH . C 3 HOH A 35 386 35 HOH HOH . C 3 HOH A 36 387 36 HOH HOH . C 3 HOH A 37 388 37 HOH HOH . C 3 HOH A 38 389 38 HOH HOH . C 3 HOH A 39 390 39 HOH HOH . C 3 HOH A 40 391 40 HOH HOH . C 3 HOH A 41 392 41 HOH HOH . C 3 HOH A 42 393 42 HOH HOH . C 3 HOH A 43 394 43 HOH HOH . C 3 HOH A 44 395 44 HOH HOH . C 3 HOH A 45 396 45 HOH HOH . C 3 HOH A 46 397 46 HOH HOH . C 3 HOH A 47 398 47 HOH HOH . C 3 HOH A 48 399 48 HOH HOH . C 3 HOH A 49 400 49 HOH HOH . C 3 HOH A 50 401 50 HOH HOH . C 3 HOH A 51 402 51 HOH HOH . C 3 HOH A 52 403 52 HOH HOH . C 3 HOH A 53 404 53 HOH HOH . C 3 HOH A 54 405 54 HOH HOH . C 3 HOH A 55 406 55 HOH HOH . C 3 HOH A 56 407 56 HOH HOH . C 3 HOH A 57 408 57 HOH HOH . C 3 HOH A 58 409 58 HOH HOH . C 3 HOH A 59 410 59 HOH HOH . C 3 HOH A 60 411 60 HOH HOH . C 3 HOH A 61 412 61 HOH HOH . C 3 HOH A 62 413 62 HOH HOH . C 3 HOH A 63 414 63 HOH HOH . C 3 HOH A 64 415 64 HOH HOH . C 3 HOH A 65 416 65 HOH HOH . C 3 HOH A 66 417 66 HOH HOH . C 3 HOH A 67 418 67 HOH HOH . C 3 HOH A 68 419 68 HOH HOH . C 3 HOH A 69 420 69 HOH HOH . C 3 HOH A 70 421 70 HOH HOH . C 3 HOH A 71 422 71 HOH HOH . C 3 HOH A 72 423 72 HOH HOH . C 3 HOH A 73 424 73 HOH HOH . C 3 HOH A 74 425 74 HOH HOH . C 3 HOH A 75 426 75 HOH HOH . C 3 HOH A 76 427 76 HOH HOH . C 3 HOH A 77 428 77 HOH HOH . C 3 HOH A 78 429 78 HOH HOH . C 3 HOH A 79 430 79 HOH HOH . C 3 HOH A 80 431 80 HOH HOH . C 3 HOH A 81 432 81 HOH HOH . C 3 HOH A 82 433 82 HOH HOH . C 3 HOH A 83 434 83 HOH HOH . C 3 HOH A 84 435 84 HOH HOH . C 3 HOH A 85 436 85 HOH HOH . C 3 HOH A 86 437 86 HOH HOH . C 3 HOH A 87 438 87 HOH HOH . C 3 HOH A 88 439 88 HOH HOH . C 3 HOH A 89 440 89 HOH HOH . C 3 HOH A 90 441 90 HOH HOH . C 3 HOH A 91 442 91 HOH HOH . C 3 HOH A 92 443 92 HOH HOH . C 3 HOH A 93 444 93 HOH HOH . C 3 HOH A 94 445 94 HOH HOH . C 3 HOH A 95 446 95 HOH HOH . C 3 HOH A 96 447 96 HOH HOH . C 3 HOH A 97 448 97 HOH HOH . C 3 HOH A 98 449 98 HOH HOH . C 3 HOH A 99 450 99 HOH HOH . C 3 HOH A 100 451 100 HOH HOH . C 3 HOH A 101 452 101 HOH HOH . C 3 HOH A 102 453 102 HOH HOH . C 3 HOH A 103 454 103 HOH HOH . C 3 HOH A 104 455 104 HOH HOH . C 3 HOH A 105 456 105 HOH HOH . C 3 HOH A 106 457 106 HOH HOH . C 3 HOH A 107 458 107 HOH HOH . C 3 HOH A 108 459 108 HOH HOH . C 3 HOH A 109 460 109 HOH HOH . C 3 HOH A 110 461 110 HOH HOH . C 3 HOH A 111 462 111 HOH HOH . C 3 HOH A 112 463 112 HOH HOH . C 3 HOH A 113 464 113 HOH HOH . C 3 HOH A 114 465 114 HOH HOH . C 3 HOH A 115 466 115 HOH HOH . C 3 HOH A 116 467 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F A92 . . . B 2 28.063 9.052 27.628 1 51.9 ? F A92 351 A 1 HETATM 2 C C1 A92 . . . B 2 23.12 7.599 24.044 1 2.06 ? C1 A92 351 A 1 HETATM 3 C C2 A92 . . . B 2 26.482 12.3 27.578 1 32.19 ? C2 A92 351 A 1 HETATM 4 C C3 A92 . . . B 2 22.804 8.782 23.414 1 16.97 ? C3 A92 351 A 1 HETATM 5 C C4 A92 . . . B 2 27.341 12.987 28.409 1 38.48 ? C4 A92 351 A 1 HETATM 6 C C5 A92 . . . B 2 24.007 7.542 25.095 1 32.95 ? C5 A92 351 A 1 HETATM 7 C C6 A92 . . . B 2 28.646 11.024 28.69 1 27.21 ? C6 A92 351 A 1 HETATM 8 C C7 A92 . . . B 2 26.691 10.967 27.302 1 78.08 ? C7 A92 351 A 1 HETATM 9 C C8 A92 . . . B 2 23.384 9.969 23.794 1 28.15 ? C8 A92 351 A 1 HETATM 10 C C9 A92 . . . B 2 28.425 12.35 28.968 1 27.79 ? C9 A92 351 A 1 HETATM 11 C C10 A92 . . . B 2 24.281 9.911 24.834 1 21.65 ? C10 A92 351 A 1 HETATM 12 C C11 A92 . . . B 2 24.584 8.736 25.485 1 21.13 ? C11 A92 351 A 1 HETATM 13 C C12 A92 . . . B 2 27.786 10.343 27.863 1 4.3 ? C12 A92 351 A 1 HETATM 14 C C13 A92 . . . B 2 25.769 10.253 26.447 1 23.93 ? C13 A92 351 A 1 HETATM 15 C C14 A92 . . . B 2 23.015 11.208 23.11 1 9.33 ? C14 A92 351 A 1 HETATM 16 C C15 A92 . . . B 2 29.775 13.603 32.236 1 111.59 ? C15 A92 351 A 1 HETATM 17 C C16 A92 . . . B 2 30.178 15.001 31.835 1 37.54 ? C16 A92 351 A 1 HETATM 18 C C17 A92 . . . B 2 28.753 13.068 31.265 1 39.03 ? C17 A92 351 A 1 HETATM 19 C C18 A92 . . . B 2 30.673 15.021 30.409 1 56.9 ? C18 A92 351 A 1 HETATM 20 C C19 A92 . . . B 2 29.359 13.051 29.886 1 46.6 ? C19 A92 351 A 1 HETATM 21 N N20 A92 . . . B 2 25.034 10.858 25.466 1 39.17 ? N20 A92 351 A 1 HETATM 22 N N21 A92 . . . B 2 25.497 8.965 26.476 1 29.44 ? N21 A92 351 A 1 HETATM 23 N N22 A92 . . . B 2 29.601 14.468 29.549 1 90.87 ? N22 A92 351 A 1 HETATM 24 N N23 A92 . . . B 2 23.707 12.302 23.563 1 26.56 ? N23 A92 351 A 1 HETATM 25 O O24 A92 . . . B 2 22.152 11.189 22.241 1 22.35 ? O24 A92 351 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #