data_3L3V # _model_server_result.job_id seH2PnlvUvPbdnGEcdV_iw _model_server_result.datetime_utc '2024-11-05 05:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 3L3V # _exptl.entry_id 3L3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L3V _cell.length_a 60.085 _cell.length_b 60.714 _cell.length_c 81.463 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 H N N ? 4 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC D 1 SUC 2 n C FRU 2 C 2 FRU D 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.418 sing covale ? covale2 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.414 sing metalc ? metalc1 J O HOH . A HOH 2 1_555 F CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc2 J O HOH . A HOH 14 1_555 E CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc3 A SG CYS 16 A CYS 65 1_555 E CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc4 A SG CYS 16 A CYS 65 1_555 F CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc5 A NE2 HIS 18 A HIS 67 1_555 E CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc6 A OE1 GLU 43 A GLU 92 1_555 E CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc7 A OE2 GLU 43 A GLU 92 1_555 F CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc8 A OD2 ASP 67 A ASP 116 1_555 F CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc9 J O HOH . A HOH 217 1_555 F CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc10 K O HOH . B HOH 3 1_555 H CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc11 K O HOH . B HOH 4 1_555 I CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc12 K O HOH . B HOH 31 1_555 H CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc13 B SG CYS 16 B CYS 65 1_555 H CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc14 B SG CYS 16 B CYS 65 1_555 I CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc15 B NE2 HIS 18 B HIS 67 1_555 I CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc16 B OE2 GLU 43 B GLU 92 1_555 H CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc17 B OE1 GLU 43 B GLU 92 1_555 I CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc18 B OD2 ASP 67 B ASP 116 1_555 H CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc19 K O HOH . B HOH 224 1_555 H CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3L3V _atom_sites.fract_transf_matrix[1][1] 0.016643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SO4 A 1 751 751 SO4 SO4 . E 4 CD A 1 1001 1001 CD CD . F 4 CD A 1 1002 1002 CD CD . G 3 SO4 B 1 752 752 SO4 SO4 . H 4 CD B 1 1003 1003 CD CD . I 4 CD B 1 1004 1004 CD CD . J 5 HOH A 1 2 2 HOH HOH . J 5 HOH A 2 5 5 HOH HOH . J 5 HOH A 3 9 9 HOH HOH . J 5 HOH A 4 11 11 HOH HOH . J 5 HOH A 5 12 12 HOH HOH . J 5 HOH A 6 14 14 HOH HOH . J 5 HOH A 7 15 15 HOH HOH . J 5 HOH A 8 17 17 HOH HOH . J 5 HOH A 9 18 18 HOH HOH . J 5 HOH A 10 20 20 HOH HOH . J 5 HOH A 11 22 22 HOH HOH . J 5 HOH A 12 24 24 HOH HOH . J 5 HOH A 13 25 25 HOH HOH . J 5 HOH A 14 27 27 HOH HOH . J 5 HOH A 15 28 28 HOH HOH . J 5 HOH A 16 29 29 HOH HOH . J 5 HOH A 17 30 30 HOH HOH . J 5 HOH A 18 32 32 HOH HOH . J 5 HOH A 19 34 34 HOH HOH . J 5 HOH A 20 35 35 HOH HOH . J 5 HOH A 21 38 38 HOH HOH . J 5 HOH A 22 39 39 HOH HOH . J 5 HOH A 23 40 40 HOH HOH . J 5 HOH A 24 43 43 HOH HOH . J 5 HOH A 25 45 45 HOH HOH . J 5 HOH A 26 47 47 HOH HOH . J 5 HOH A 27 48 48 HOH HOH . J 5 HOH A 28 213 1 HOH HOH . J 5 HOH A 29 214 50 HOH HOH . J 5 HOH A 30 215 51 HOH HOH . J 5 HOH A 31 216 52 HOH HOH . J 5 HOH A 32 217 53 HOH HOH . J 5 HOH A 33 218 54 HOH HOH . J 5 HOH A 34 219 55 HOH HOH . J 5 HOH A 35 220 56 HOH HOH . J 5 HOH A 36 221 57 HOH HOH . J 5 HOH A 37 222 58 HOH HOH . J 5 HOH A 38 223 59 HOH HOH . J 5 HOH A 39 224 60 HOH HOH . J 5 HOH A 40 225 70 HOH HOH . J 5 HOH A 41 226 72 HOH HOH . J 5 HOH A 42 227 73 HOH HOH . J 5 HOH A 43 228 75 HOH HOH . J 5 HOH A 44 229 76 HOH HOH . J 5 HOH A 45 230 81 HOH HOH . J 5 HOH A 46 231 83 HOH HOH . K 5 HOH B 1 3 3 HOH HOH . K 5 HOH B 2 4 4 HOH HOH . K 5 HOH B 3 6 6 HOH HOH . K 5 HOH B 4 7 7 HOH HOH . K 5 HOH B 5 8 8 HOH HOH . K 5 HOH B 6 10 10 HOH HOH . K 5 HOH B 7 13 13 HOH HOH . K 5 HOH B 8 16 16 HOH HOH . K 5 HOH B 9 19 19 HOH HOH . K 5 HOH B 10 21 21 HOH HOH . K 5 HOH B 11 23 23 HOH HOH . K 5 HOH B 12 26 26 HOH HOH . K 5 HOH B 13 31 31 HOH HOH . K 5 HOH B 14 33 33 HOH HOH . K 5 HOH B 15 36 36 HOH HOH . K 5 HOH B 16 37 37 HOH HOH . K 5 HOH B 17 41 41 HOH HOH . K 5 HOH B 18 42 42 HOH HOH . K 5 HOH B 19 44 44 HOH HOH . K 5 HOH B 20 46 46 HOH HOH . K 5 HOH B 21 49 49 HOH HOH . K 5 HOH B 22 213 61 HOH HOH . K 5 HOH B 23 214 62 HOH HOH . K 5 HOH B 24 215 63 HOH HOH . K 5 HOH B 25 216 64 HOH HOH . K 5 HOH B 26 217 65 HOH HOH . K 5 HOH B 27 218 66 HOH HOH . K 5 HOH B 28 219 67 HOH HOH . K 5 HOH B 29 220 68 HOH HOH . K 5 HOH B 30 221 69 HOH HOH . K 5 HOH B 31 222 71 HOH HOH . K 5 HOH B 32 223 74 HOH HOH . K 5 HOH B 33 224 77 HOH HOH . K 5 HOH B 34 225 78 HOH HOH . K 5 HOH B 35 226 79 HOH HOH . K 5 HOH B 36 227 80 HOH HOH . K 5 HOH B 37 228 82 HOH HOH . K 5 HOH B 38 229 84 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -3.426 _atom_site.Cartn_y 20.24 _atom_site.Cartn_z 6.445 _atom_site.occupancy 0.85 _atom_site.B_iso_or_equiv 26.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #