data_3L4D
#
_model_server_result.job_id            8rFuGAcHwFzETKi0CSiWhQ 
_model_server_result.datetime_utc      '2024-10-19 11:36:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l4d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1}' 
#
_entry.id    3L4D 
#
_exptl.entry_id    3L4D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              350.491 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,6,9,12,15-PENTAOXATRICOSAN-1-OL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.82 
_cell.angle_gamma         90 
_cell.entry_id            3L4D 
_cell.length_a            84.891 
_cell.length_b            118.509 
_cell.length_c            100.96 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L4D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 395 A CYS 422 1_555 E FE HEM . A HEM 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc2 E FE HEM . A HEM 481 1_555 F N5 TPF . A TPF 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
metalc ? metalc3 B SG CYS 395 B CYS 422 1_555 G FE HEM . B HEM 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc4 G FE HEM . B HEM 481 1_555 H N5 TPF . B TPF 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
metalc ? metalc5 C SG CYS 395 C CYS 422 1_555 I FE HEM . C HEM 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc6 I FE HEM . C HEM 481 1_555 J N5 TPF . C TPF 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
metalc ? metalc7 D SG CYS 395 D CYS 422 1_555 L FE HEM . D HEM 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc8 L FE HEM . D HEM 481 1_555 M N5 TPF . D TPF 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? 
#
_chem_comp.formula           'C18 H38 O6' 
_chem_comp.formula_weight    350.491 
_chem_comp.id                N8E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,6,9,12,15-PENTAOXATRICOSAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'N-OCTYLPENTAOXYETHYLENE;PENTAETHYLENE GLYCOL MONOOCTYL ETHER;OCTYLPENTAGLYCOL N-OCTYLPENTAOXYETHYLENE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 N8E sing 319 n n 
C01 H011 N8E sing 320 n n 
C01 H012 N8E sing 321 n n 
C01 H013 N8E sing 322 n n 
C02 C03 N8E sing 323 n n 
C02 H021 N8E sing 324 n n 
C02 H022 N8E sing 325 n n 
C03 C04 N8E sing 326 n n 
C03 H031 N8E sing 327 n n 
C03 H032 N8E sing 328 n n 
C04 C05 N8E sing 329 n n 
C04 H041 N8E sing 330 n n 
C04 H042 N8E sing 331 n n 
C05 C06 N8E sing 332 n n 
C05 H051 N8E sing 333 n n 
C05 H052 N8E sing 334 n n 
C06 C07 N8E sing 335 n n 
C06 H061 N8E sing 336 n n 
C06 H062 N8E sing 337 n n 
C07 C08 N8E sing 338 n n 
C07 H071 N8E sing 339 n n 
C07 H072 N8E sing 340 n n 
C08 O09 N8E sing 341 n n 
C08 H081 N8E sing 342 n n 
C08 H082 N8E sing 343 n n 
O09 C10 N8E sing 344 n n 
C10 C11 N8E sing 345 n n 
C10 H101 N8E sing 346 n n 
C10 H102 N8E sing 347 n n 
C11 O12 N8E sing 348 n n 
C11 H111 N8E sing 349 n n 
C11 H112 N8E sing 350 n n 
O12 C13 N8E sing 351 n n 
C13 C14 N8E sing 352 n n 
C13 H131 N8E sing 353 n n 
C13 H132 N8E sing 354 n n 
C14 O15 N8E sing 355 n n 
C14 H141 N8E sing 356 n n 
C14 H142 N8E sing 357 n n 
O15 C16 N8E sing 358 n n 
C16 C17 N8E sing 359 n n 
C16 H161 N8E sing 360 n n 
C16 H162 N8E sing 361 n n 
C17 O18 N8E sing 362 n n 
C17 H171 N8E sing 363 n n 
C17 H172 N8E sing 364 n n 
O18 C19 N8E sing 365 n n 
C19 C20 N8E sing 366 n n 
C19 H191 N8E sing 367 n n 
C19 H192 N8E sing 368 n n 
C20 O21 N8E sing 369 n n 
C20 H201 N8E sing 370 n n 
C20 H202 N8E sing 371 n n 
O21 C22 N8E sing 372 n n 
C22 C23 N8E sing 373 n n 
C22 H221 N8E sing 374 n n 
C22 H222 N8E sing 375 n n 
C23 O24 N8E sing 376 n n 
C23 H231 N8E sing 377 n n 
C23 H232 N8E sing 378 n n 
O24 H24 N8E sing 379 n n 
#
_atom_sites.entry_id                     3L4D 
_atom_sites.fract_transf_matrix[1][1]    0.01178 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003117 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008438 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010246 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 481 481 HEM HEM . 
F 3 TPF A 1 490 490 TPF TPF . 
G 2 HEM B 1 481 481 HEM HEM . 
H 3 TPF B 1 490 490 TPF TPF . 
I 2 HEM C 1 481 481 HEM HEM . 
J 3 TPF C 1 490 490 TPF TPF . 
K 4 N8E C 1 1 1 N8E N8E . 
L 2 HEM D 1 481 481 HEM HEM . 
M 3 TPF D 1 490 490 TPF TPF . 
N 5 HOH A 1 3 3 HOH HOH . 
N 5 HOH A 2 4 4 HOH HOH . 
N 5 HOH A 3 8 8 HOH HOH . 
N 5 HOH A 4 15 15 HOH HOH . 
N 5 HOH A 5 18 18 HOH HOH . 
N 5 HOH A 6 20 20 HOH HOH . 
N 5 HOH A 7 21 21 HOH HOH . 
N 5 HOH A 8 22 22 HOH HOH . 
N 5 HOH A 9 482 482 HOH HOH . 
N 5 HOH A 10 483 483 HOH HOH . 
N 5 HOH A 11 484 484 HOH HOH . 
N 5 HOH A 12 485 485 HOH HOH . 
N 5 HOH A 13 486 486 HOH HOH . 
N 5 HOH A 14 487 487 HOH HOH . 
N 5 HOH A 15 488 488 HOH HOH . 
N 5 HOH A 16 489 489 HOH HOH . 
O 5 HOH B 1 1 1 HOH HOH . 
O 5 HOH B 2 5 5 HOH HOH . 
O 5 HOH B 3 6 6 HOH HOH . 
O 5 HOH B 4 9 9 HOH HOH . 
O 5 HOH B 5 11 11 HOH HOH . 
O 5 HOH B 6 19 19 HOH HOH . 
O 5 HOH B 7 482 482 HOH HOH . 
O 5 HOH B 8 483 483 HOH HOH . 
O 5 HOH B 9 484 484 HOH HOH . 
O 5 HOH B 10 485 485 HOH HOH . 
O 5 HOH B 11 486 486 HOH HOH . 
P 5 HOH C 1 2 2 HOH HOH . 
P 5 HOH C 2 7 7 HOH HOH . 
P 5 HOH C 3 12 12 HOH HOH . 
P 5 HOH C 4 16 16 HOH HOH . 
P 5 HOH C 5 17 17 HOH HOH . 
P 5 HOH C 6 26 26 HOH HOH . 
P 5 HOH C 7 27 27 HOH HOH . 
P 5 HOH C 8 482 482 HOH HOH . 
P 5 HOH C 9 483 483 HOH HOH . 
P 5 HOH C 10 484 484 HOH HOH . 
P 5 HOH C 11 485 485 HOH HOH . 
P 5 HOH C 12 486 486 HOH HOH . 
P 5 HOH C 13 487 487 HOH HOH . 
P 5 HOH C 14 488 488 HOH HOH . 
P 5 HOH C 15 489 489 HOH HOH . 
P 5 HOH C 16 491 491 HOH HOH . 
Q 5 HOH D 1 10 10 HOH HOH . 
Q 5 HOH D 2 13 13 HOH HOH . 
Q 5 HOH D 3 14 14 HOH HOH . 
Q 5 HOH D 4 23 23 HOH HOH . 
Q 5 HOH D 5 24 24 HOH HOH . 
Q 5 HOH D 6 25 25 HOH HOH . 
Q 5 HOH D 7 482 482 HOH HOH . 
Q 5 HOH D 8 483 483 HOH HOH . 
Q 5 HOH D 9 484 484 HOH HOH . 
Q 5 HOH D 10 485 485 HOH HOH . 
Q 5 HOH D 11 486 486 HOH HOH . 
Q 5 HOH D 12 487 487 HOH HOH . 
Q 5 HOH D 13 488 488 HOH HOH . 
Q 5 HOH D 14 489 489 HOH HOH . 
Q 5 HOH D 15 491 491 HOH HOH . 
Q 5 HOH D 16 492 492 HOH HOH . 
Q 5 HOH D 17 493 493 HOH HOH . 
Q 5 HOH D 18 494 494 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 N8E . . . K 4 33.203 -41.91 -28.483 1 75.57 ? C01 N8E 1 C 1 
HETATM 2 C C02 N8E . . . K 4 34.558 -42.517 -28.176 1 73.97 ? C02 N8E 1 C 1 
HETATM 3 C C03 N8E . . . K 4 35.049 -42.118 -26.787 1 72.43 ? C03 N8E 1 C 1 
HETATM 4 C C04 N8E . . . K 4 35.561 -40.682 -26.777 1 71.46 ? C04 N8E 1 C 1 
HETATM 5 C C05 N8E . . . K 4 34.397 -39.702 -26.674 1 69.27 ? C05 N8E 1 C 1 
HETATM 6 C C06 N8E . . . K 4 34.862 -38.269 -26.889 1 67.72 ? C06 N8E 1 C 1 
HETATM 7 C C07 N8E . . . K 4 36.016 -38.195 -27.881 1 67.54 ? C07 N8E 1 C 1 
HETATM 8 C C08 N8E . . . K 4 36.457 -36.747 -28.063 1 69.79 ? C08 N8E 1 C 1 
HETATM 9 O O09 N8E . . . K 4 37.714 -36.701 -28.736 1 71.78 ? O09 N8E 1 C 1 
HETATM 10 C C10 N8E . . . K 4 38.408 -35.483 -28.466 1 72.88 ? C10 N8E 1 C 1 
HETATM 11 C C11 N8E . . . K 4 37.445 -34.306 -28.599 1 73.49 ? C11 N8E 1 C 1 
HETATM 12 O O12 N8E . . . K 4 38.121 -33.094 -28.265 1 70.07 ? O12 N8E 1 C 1 
HETATM 13 C C13 N8E . . . K 4 37.215 -32.019 -28.032 1 65.03 ? C13 N8E 1 C 1 
HETATM 14 C C14 N8E . . . K 4 37.889 -30.714 -28.438 1 61.6 ? C14 N8E 1 C 1 
HETATM 15 O O15 N8E . . . K 4 36.903 -29.698 -28.596 1 59.2 ? O15 N8E 1 C 1 
HETATM 16 C C16 N8E . . . K 4 37.489 -28.4 -28.557 1 60.65 ? C16 N8E 1 C 1 
HETATM 17 C C17 N8E . . . K 4 36.403 -27.363 -28.307 1 62.82 ? C17 N8E 1 C 1 
HETATM 18 O O18 N8E . . . K 4 36.729 -26.169 -29.016 1 66.65 ? O18 N8E 1 C 1 
HETATM 19 C C19 N8E . . . K 4 35.7 -25.187 -28.886 1 69.99 ? C19 N8E 1 C 1 
HETATM 20 C C20 N8E . . . K 4 36.145 -23.91 -29.592 1 71.5 ? C20 N8E 1 C 1 
HETATM 21 O O21 N8E . . . K 4 37.432 -23.535 -29.102 1 76.14 ? O21 N8E 1 C 1 
HETATM 22 C C22 N8E . . . K 4 37.745 -22.173 -29.393 1 75.42 ? C22 N8E 1 C 1 
HETATM 23 C C23 N8E . . . K 4 36.571 -21.278 -28.996 1 74.85 ? C23 N8E 1 C 1 
HETATM 24 O O24 N8E . . . K 4 36.001 -21.73 -27.756 1 72.43 ? O24 N8E 1 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           24 
#