data_3L4K # _model_server_result.job_id zkzXpYdFKzn1Y0N8lkjaKA _model_server_result.datetime_utc '2024-12-02 01:09:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":16}' # _entry.id 3L4K # _exptl.entry_id 3L4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L4K _cell.length_a 86.064 _cell.length_b 91.851 _cell.length_c 115.939 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 361 A ARG 781 1_555 A N PTR 362 A PTR 782 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.554 ? covale ? covale2 A C PTR 362 A PTR 782 1_555 A N ILE 363 A ILE 783 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.414 ? metalc ? metalc1 F ZN ZN . A ZN 1 1_555 A NE2 HIS 315 A HIS 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc2 F ZN ZN . A ZN 1 1_555 A OE2 GLU 388 A GLU 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 G ZN ZN . A ZN 3 1_555 A OE2 GLU 29 A GLU 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc4 G ZN ZN . A ZN 3 1_555 A OD2 ASP 106 A ASP 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 G ZN ZN . A ZN 3 1_555 B O3' DC 11 B DC 11 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.08 ? metalc ? metalc6 G ZN ZN . A ZN 3 1_555 M S3' TSP . D TSP 11 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 H ZN ZN . A ZN 4 1_555 A OD2 ASP 106 A ASP 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc8 H ZN ZN . A ZN 4 1_555 A OD2 ASP 108 A ASP 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc9 I ZN ZN . A ZN 5 1_555 A NE2 HIS 561 A HIS 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc10 J ZN ZN . A ZN 6 1_555 A NE2 HIS 203 A HIS 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc11 K ZN ZN . A ZN 7 1_555 A NE2 HIS 208 A HIS 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc12 L ZN ZN . A ZN 8 1_555 A NE2 HIS 316 A HIS 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc13 C N7 DG 4 C DG 4 1_555 N ZN ZN . E ZN 16 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc14 E N7 DG 4 E DG 4 1_555 N ZN ZN . E ZN 16 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.923 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 B DC 1 1_555 C N1 DG 15 C DG 15 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 B DC 1 1_555 C O6 DG 15 C DG 15 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 B DC 1 1_555 C N2 DG 15 C DG 15 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DC 2 B DC 2 1_555 C N1 DG 14 C DG 14 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 DC 2 B DC 2 1_555 C O6 DG 14 C DG 14 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 DC 2 B DC 2 1_555 C N2 DG 14 C DG 14 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DT 3 B DT 3 1_555 C N1 DA 13 C DA 13 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O4 DT 3 B DT 3 1_555 C N6 DA 13 C DA 13 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DA 4 B DA 4 1_555 C N3 DT 12 C DT 12 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N6 DA 4 B DA 4 1_555 C O4 DT 12 C DT 12 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 5 B DC 5 1_555 C N1 DG 11 C DG 11 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 5 B DC 5 1_555 C O6 DG 11 C DG 11 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 5 B DC 5 1_555 C N2 DG 11 C DG 11 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DT 6 B DT 6 1_555 C N1 DA 10 C DA 10 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O4 DT 6 B DT 6 1_555 C N6 DA 10 C DA 10 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 DG 7 B DG 7 1_555 C N3 DC 9 C DC 9 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N2 DG 7 B DG 7 1_555 C O2 DC 9 C DC 9 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O6 DG 7 B DG 7 1_555 C N4 DC 9 C DC 9 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DC 8 B DC 8 1_555 C N1 DG 8 C DG 8 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N4 DC 8 B DC 8 1_555 C O6 DG 8 C DG 8 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O2 DC 8 B DC 8 1_555 C N2 DG 8 C DG 8 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N3 DT 9 B DT 9 1_555 C N1 DA 7 C DA 7 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O4 DT 9 B DT 9 1_555 C N6 DA 7 C DA 7 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog24 B N1 DA 10 B DA 10 1_555 C N3 DT 6 C DT 6 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog25 B O2 DC 11 B DC 11 1_555 C N2 DG 5 C DG 5 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 D N1 DG 1 D DG 1 1_555 E N3 DC 15 E DC 15 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 D N2 DG 1 D DG 1 1_555 E O2 DC 15 E DC 15 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 D O6 DG 1 D DG 1 1_555 E N4 DC 15 E DC 15 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 D N1 DG 2 D DG 2 1_555 E N3 DC 14 E DC 14 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 D N2 DG 2 D DG 2 1_555 E O2 DC 14 E DC 14 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 D O6 DG 2 D DG 2 1_555 E N4 DC 14 E DC 14 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 D N1 DA 3 D DA 3 1_555 E N3 DT 13 E DT 13 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 D N6 DA 3 D DA 3 1_555 E O4 DT 13 E DT 13 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 D N3 DT 4 D DT 4 1_555 E N1 DA 12 E DA 12 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 D O4 DT 4 D DT 4 1_555 E N6 DA 12 E DA 12 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 D N1 DG 5 D DG 5 1_555 E N3 DC 11 E DC 11 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 D N2 DG 5 D DG 5 1_555 E O2 DC 11 E DC 11 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 D O6 DG 5 D DG 5 1_555 E N4 DC 11 E DC 11 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 D N1 DA 6 D DA 6 1_555 E N3 DT 10 E DT 10 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 D N6 DA 6 D DA 6 1_555 E O4 DT 10 E DT 10 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 D N3 DC 7 D DC 7 1_555 E N1 DG 9 E DG 9 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 D N4 DC 7 D DC 7 1_555 E O6 DG 9 E DG 9 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 D O2 DC 7 D DC 7 1_555 E N2 DG 9 E DG 9 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 D N1 DG 8 D DG 8 1_555 E N3 DC 8 E DC 8 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 D N2 DG 8 D DG 8 1_555 E O2 DC 8 E DC 8 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 D O6 DG 8 D DG 8 1_555 E N4 DC 8 E DC 8 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 D N1 DA 9 D DA 9 1_555 E N3 DT 7 E DT 7 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 D N6 DA 9 D DA 9 1_555 E O4 DT 7 E DT 7 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 D N3 DT 10 D DT 10 1_555 E N1 DA 6 E DA 6 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog50 D O4 DT 10 D DT 10 1_555 E N6 DA 6 E DA 6 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3L4K _atom_sites.fract_transf_matrix[1][1] 0.011619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ZN A 1 1 1 ZN ZN . G 6 ZN A 1 3 3 ZN ZN . H 6 ZN A 1 4 4 ZN ZN . I 6 ZN A 1 5 5 ZN ZN . J 6 ZN A 1 6 6 ZN ZN . K 6 ZN A 1 7 7 ZN ZN . L 6 ZN A 1 8 8 ZN ZN . M 7 TSP D 1 11 11 TSP TSP . N 6 ZN E 1 16 16 ZN ZN . O 8 HOH A 1 100 100 HOH HOH . O 8 HOH A 2 101 101 HOH HOH . O 8 HOH A 3 102 102 HOH HOH . O 8 HOH A 4 103 103 HOH HOH . O 8 HOH A 5 104 104 HOH HOH . O 8 HOH A 6 105 105 HOH HOH . O 8 HOH A 7 106 106 HOH HOH . O 8 HOH A 8 107 107 HOH HOH . O 8 HOH A 9 108 108 HOH HOH . O 8 HOH A 10 109 109 HOH HOH . O 8 HOH A 11 110 110 HOH HOH . O 8 HOH A 12 111 111 HOH HOH . O 8 HOH A 13 112 112 HOH HOH . O 8 HOH A 14 113 113 HOH HOH . O 8 HOH A 15 114 114 HOH HOH . O 8 HOH A 16 115 115 HOH HOH . O 8 HOH A 17 116 116 HOH HOH . P 8 HOH B 1 117 117 HOH HOH . P 8 HOH B 2 118 118 HOH HOH . Q 8 HOH E 1 119 119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 6 _atom_site.Cartn_x -42.252 _atom_site.Cartn_y 24.396 _atom_site.Cartn_z -6.554 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 102.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 16 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #