data_3L4R # _model_server_result.job_id DtiiN34wJPj95NQLHaIfnA _model_server_result.datetime_utc '2024-12-22 06:01:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":171}' # _entry.id 3L4R # _exptl.entry_id 3L4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L4R _cell.length_a 68.175 _cell.length_b 76.898 _cell.length_c 64.996 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 64 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 64 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 157 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 157 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.018 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3L4R _atom_sites.fract_transf_matrix[1][1] 0.014668 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 171 171 GOL GOL . C 3 HOH A 1 172 172 HOH HOH . C 3 HOH A 2 173 173 HOH HOH . C 3 HOH A 3 174 174 HOH HOH . C 3 HOH A 4 175 175 HOH HOH . C 3 HOH A 5 176 176 HOH HOH . C 3 HOH A 6 177 177 HOH HOH . C 3 HOH A 7 178 178 HOH HOH . C 3 HOH A 8 179 179 HOH HOH . C 3 HOH A 9 180 180 HOH HOH . C 3 HOH A 10 181 181 HOH HOH . C 3 HOH A 11 182 182 HOH HOH . C 3 HOH A 12 183 183 HOH HOH . C 3 HOH A 13 184 184 HOH HOH . C 3 HOH A 14 185 185 HOH HOH . C 3 HOH A 15 186 186 HOH HOH . C 3 HOH A 16 187 187 HOH HOH . C 3 HOH A 17 188 188 HOH HOH . C 3 HOH A 18 189 189 HOH HOH . C 3 HOH A 19 190 190 HOH HOH . C 3 HOH A 20 191 191 HOH HOH . C 3 HOH A 21 192 192 HOH HOH . C 3 HOH A 22 193 193 HOH HOH . C 3 HOH A 23 194 194 HOH HOH . C 3 HOH A 24 195 195 HOH HOH . C 3 HOH A 25 196 196 HOH HOH . C 3 HOH A 26 197 197 HOH HOH . C 3 HOH A 27 198 198 HOH HOH . C 3 HOH A 28 199 199 HOH HOH . C 3 HOH A 29 200 200 HOH HOH . C 3 HOH A 30 201 201 HOH HOH . C 3 HOH A 31 202 202 HOH HOH . C 3 HOH A 32 203 203 HOH HOH . C 3 HOH A 33 204 204 HOH HOH . C 3 HOH A 34 205 205 HOH HOH . C 3 HOH A 35 206 206 HOH HOH . C 3 HOH A 36 207 207 HOH HOH . C 3 HOH A 37 208 208 HOH HOH . C 3 HOH A 38 209 209 HOH HOH . C 3 HOH A 39 210 210 HOH HOH . C 3 HOH A 40 211 211 HOH HOH . C 3 HOH A 41 212 212 HOH HOH . C 3 HOH A 42 213 213 HOH HOH . C 3 HOH A 43 214 214 HOH HOH . C 3 HOH A 44 215 215 HOH HOH . C 3 HOH A 45 216 216 HOH HOH . C 3 HOH A 46 217 217 HOH HOH . C 3 HOH A 47 218 218 HOH HOH . C 3 HOH A 48 219 219 HOH HOH . C 3 HOH A 49 220 220 HOH HOH . C 3 HOH A 50 221 221 HOH HOH . C 3 HOH A 51 222 222 HOH HOH . C 3 HOH A 52 223 223 HOH HOH . C 3 HOH A 53 224 224 HOH HOH . C 3 HOH A 54 225 225 HOH HOH . C 3 HOH A 55 226 226 HOH HOH . C 3 HOH A 56 227 227 HOH HOH . C 3 HOH A 57 228 228 HOH HOH . C 3 HOH A 58 229 229 HOH HOH . C 3 HOH A 59 230 230 HOH HOH . C 3 HOH A 60 231 231 HOH HOH . C 3 HOH A 61 232 232 HOH HOH . C 3 HOH A 62 233 233 HOH HOH . C 3 HOH A 63 234 234 HOH HOH . C 3 HOH A 64 235 235 HOH HOH . C 3 HOH A 65 236 236 HOH HOH . C 3 HOH A 66 237 237 HOH HOH . C 3 HOH A 67 238 238 HOH HOH . C 3 HOH A 68 239 239 HOH HOH . C 3 HOH A 69 240 240 HOH HOH . C 3 HOH A 70 241 241 HOH HOH . C 3 HOH A 71 242 242 HOH HOH . C 3 HOH A 72 243 243 HOH HOH . C 3 HOH A 73 244 244 HOH HOH . C 3 HOH A 74 245 245 HOH HOH . C 3 HOH A 75 246 246 HOH HOH . C 3 HOH A 76 247 247 HOH HOH . C 3 HOH A 77 248 248 HOH HOH . C 3 HOH A 78 249 249 HOH HOH . C 3 HOH A 79 250 250 HOH HOH . C 3 HOH A 80 251 251 HOH HOH . C 3 HOH A 81 252 252 HOH HOH . C 3 HOH A 82 253 253 HOH HOH . C 3 HOH A 83 254 254 HOH HOH . C 3 HOH A 84 255 255 HOH HOH . C 3 HOH A 85 256 256 HOH HOH . C 3 HOH A 86 257 257 HOH HOH . C 3 HOH A 87 258 258 HOH HOH . C 3 HOH A 88 259 259 HOH HOH . C 3 HOH A 89 260 260 HOH HOH . C 3 HOH A 90 261 261 HOH HOH . C 3 HOH A 91 262 262 HOH HOH . C 3 HOH A 92 263 263 HOH HOH . C 3 HOH A 93 264 264 HOH HOH . C 3 HOH A 94 265 265 HOH HOH . C 3 HOH A 95 266 266 HOH HOH . C 3 HOH A 96 267 267 HOH HOH . C 3 HOH A 97 268 268 HOH HOH . C 3 HOH A 98 269 269 HOH HOH . C 3 HOH A 99 270 270 HOH HOH . C 3 HOH A 100 271 271 HOH HOH . C 3 HOH A 101 272 272 HOH HOH . C 3 HOH A 102 273 273 HOH HOH . C 3 HOH A 103 274 274 HOH HOH . C 3 HOH A 104 275 275 HOH HOH . C 3 HOH A 105 276 276 HOH HOH . C 3 HOH A 106 277 277 HOH HOH . C 3 HOH A 107 278 278 HOH HOH . C 3 HOH A 108 279 279 HOH HOH . C 3 HOH A 109 280 280 HOH HOH . C 3 HOH A 110 281 281 HOH HOH . C 3 HOH A 111 282 282 HOH HOH . C 3 HOH A 112 283 283 HOH HOH . C 3 HOH A 113 284 284 HOH HOH . C 3 HOH A 114 285 285 HOH HOH . C 3 HOH A 115 286 286 HOH HOH . C 3 HOH A 116 287 287 HOH HOH . C 3 HOH A 117 288 288 HOH HOH . C 3 HOH A 118 289 289 HOH HOH . C 3 HOH A 119 290 290 HOH HOH . C 3 HOH A 120 291 291 HOH HOH . C 3 HOH A 121 292 292 HOH HOH . C 3 HOH A 122 293 293 HOH HOH . C 3 HOH A 123 294 294 HOH HOH . C 3 HOH A 124 295 295 HOH HOH . C 3 HOH A 125 296 296 HOH HOH . C 3 HOH A 126 297 297 HOH HOH . C 3 HOH A 127 298 298 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 19.736 22.723 3.404 1 40.73 ? C1 GOL 171 A 1 HETATM 2 O O1 GOL . . . B 2 18.513 22.481 2.736 1 41.78 ? O1 GOL 171 A 1 HETATM 3 C C2 GOL . . . B 2 19.639 22.233 4.839 1 40.93 ? C2 GOL 171 A 1 HETATM 4 O O2 GOL . . . B 2 20.84 22.548 5.505 1 41.12 ? O2 GOL 171 A 1 HETATM 5 C C3 GOL . . . B 2 19.409 20.723 4.873 1 41.6 ? C3 GOL 171 A 1 HETATM 6 O O3 GOL . . . B 2 18.225 20.341 4.189 1 42.24 ? O3 GOL 171 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #