data_3L4S # _model_server_result.job_id smOo966EVKKethmabTmGMA _model_server_result.datetime_utc '2024-11-01 15:36:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":338}' # _entry.id 3L4S # _exptl.entry_id 3L4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.057 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-PHOSPHOGLYCERIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.31 _cell.angle_gamma 90 _cell.entry_id 3L4S _cell.length_a 68.593 _cell.length_b 102.936 _cell.length_c 90.652 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 J N N ? 2 L N N # _chem_comp.formula 'C3 H7 O7 P' _chem_comp.formula_weight 186.057 _chem_comp.id 3PG _chem_comp.mon_nstd_flag . _chem_comp.name '3-PHOSPHOGLYCERIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 3PG doub 1 n n C1 O2 3PG sing 2 n n C1 C2 3PG sing 3 n n O2 HO2 3PG sing 4 n n C2 O3 3PG sing 5 n n C2 C3 3PG sing 6 n n C2 H2 3PG sing 7 n n O3 HO3 3PG sing 8 n n C3 O1P 3PG sing 9 n n C3 H31 3PG sing 10 n n C3 H32 3PG sing 11 n n O1P P 3PG sing 12 n n P O2P 3PG doub 13 n n P O3P 3PG sing 14 n n P O4P 3PG sing 15 n n O3P HOP3 3PG sing 16 n n O4P HOP4 3PG sing 17 n n # _atom_sites.entry_id 3L4S _atom_sites.fract_transf_matrix[1][1] 0.014579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005108 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 3PG Q 1 338 338 3PG 3PG . F 3 NAD Q 1 337 337 NAD NAD . G 3 NAD P 1 337 337 NAD NAD . H 2 3PG P 1 338 338 3PG 3PG . I 3 NAD O 1 337 337 NAD NAD . J 2 3PG O 1 338 338 3PG 3PG . K 3 NAD R 1 337 337 NAD NAD . L 2 3PG R 1 338 338 3PG 3PG . M 4 HOH Q 1 339 339 HOH HOH . M 4 HOH Q 2 340 340 HOH HOH . M 4 HOH Q 3 341 341 HOH HOH . M 4 HOH Q 4 342 342 HOH HOH . M 4 HOH Q 5 343 343 HOH HOH . M 4 HOH Q 6 344 344 HOH HOH . M 4 HOH Q 7 345 345 HOH HOH . M 4 HOH Q 8 346 346 HOH HOH . M 4 HOH Q 9 347 347 HOH HOH . M 4 HOH Q 10 348 348 HOH HOH . M 4 HOH Q 11 349 349 HOH HOH . M 4 HOH Q 12 350 350 HOH HOH . M 4 HOH Q 13 351 351 HOH HOH . M 4 HOH Q 14 352 352 HOH HOH . M 4 HOH Q 15 353 353 HOH HOH . M 4 HOH Q 16 354 354 HOH HOH . M 4 HOH Q 17 355 355 HOH HOH . M 4 HOH Q 18 356 356 HOH HOH . M 4 HOH Q 19 357 357 HOH HOH . M 4 HOH Q 20 358 358 HOH HOH . M 4 HOH Q 21 359 359 HOH HOH . M 4 HOH Q 22 360 360 HOH HOH . M 4 HOH Q 23 361 361 HOH HOH . M 4 HOH Q 24 362 362 HOH HOH . M 4 HOH Q 25 363 363 HOH HOH . M 4 HOH Q 26 364 364 HOH HOH . M 4 HOH Q 27 365 365 HOH HOH . M 4 HOH Q 28 366 366 HOH HOH . M 4 HOH Q 29 367 367 HOH HOH . M 4 HOH Q 30 368 368 HOH HOH . M 4 HOH Q 31 369 369 HOH HOH . M 4 HOH Q 32 370 370 HOH HOH . M 4 HOH Q 33 371 371 HOH HOH . M 4 HOH Q 34 372 372 HOH HOH . M 4 HOH Q 35 373 373 HOH HOH . M 4 HOH Q 36 374 374 HOH HOH . M 4 HOH Q 37 375 375 HOH HOH . M 4 HOH Q 38 376 376 HOH HOH . M 4 HOH Q 39 377 377 HOH HOH . M 4 HOH Q 40 378 378 HOH HOH . M 4 HOH Q 41 379 379 HOH HOH . M 4 HOH Q 42 380 380 HOH HOH . M 4 HOH Q 43 381 381 HOH HOH . M 4 HOH Q 44 382 382 HOH HOH . M 4 HOH Q 45 383 383 HOH HOH . M 4 HOH Q 46 384 384 HOH HOH . M 4 HOH Q 47 385 385 HOH HOH . M 4 HOH Q 48 386 386 HOH HOH . M 4 HOH Q 49 387 387 HOH HOH . M 4 HOH Q 50 388 388 HOH HOH . M 4 HOH Q 51 389 389 HOH HOH . M 4 HOH Q 52 390 390 HOH HOH . M 4 HOH Q 53 391 391 HOH HOH . M 4 HOH Q 54 392 392 HOH HOH . M 4 HOH Q 55 393 393 HOH HOH . M 4 HOH Q 56 394 394 HOH HOH . M 4 HOH Q 57 395 395 HOH HOH . M 4 HOH Q 58 396 396 HOH HOH . M 4 HOH Q 59 397 397 HOH HOH . M 4 HOH Q 60 398 398 HOH HOH . N 4 HOH P 1 339 339 HOH HOH . N 4 HOH P 2 340 340 HOH HOH . N 4 HOH P 3 341 341 HOH HOH . N 4 HOH P 4 342 342 HOH HOH . N 4 HOH P 5 343 343 HOH HOH . N 4 HOH P 6 344 344 HOH HOH . N 4 HOH P 7 345 345 HOH HOH . N 4 HOH P 8 346 346 HOH HOH . N 4 HOH P 9 347 347 HOH HOH . N 4 HOH P 10 348 348 HOH HOH . N 4 HOH P 11 349 349 HOH HOH . N 4 HOH P 12 350 350 HOH HOH . N 4 HOH P 13 351 351 HOH HOH . N 4 HOH P 14 352 352 HOH HOH . N 4 HOH P 15 353 353 HOH HOH . N 4 HOH P 16 354 354 HOH HOH . N 4 HOH P 17 355 355 HOH HOH . N 4 HOH P 18 356 356 HOH HOH . N 4 HOH P 19 357 357 HOH HOH . N 4 HOH P 20 358 358 HOH HOH . N 4 HOH P 21 359 359 HOH HOH . N 4 HOH P 22 360 360 HOH HOH . N 4 HOH P 23 361 361 HOH HOH . N 4 HOH P 24 362 362 HOH HOH . N 4 HOH P 25 363 363 HOH HOH . N 4 HOH P 26 364 364 HOH HOH . N 4 HOH P 27 365 365 HOH HOH . N 4 HOH P 28 366 366 HOH HOH . N 4 HOH P 29 367 367 HOH HOH . N 4 HOH P 30 368 368 HOH HOH . N 4 HOH P 31 369 369 HOH HOH . N 4 HOH P 32 370 370 HOH HOH . N 4 HOH P 33 371 371 HOH HOH . N 4 HOH P 34 372 372 HOH HOH . N 4 HOH P 35 373 373 HOH HOH . N 4 HOH P 36 374 374 HOH HOH . N 4 HOH P 37 375 375 HOH HOH . N 4 HOH P 38 376 376 HOH HOH . N 4 HOH P 39 377 377 HOH HOH . N 4 HOH P 40 378 378 HOH HOH . N 4 HOH P 41 379 379 HOH HOH . N 4 HOH P 42 380 380 HOH HOH . N 4 HOH P 43 381 381 HOH HOH . N 4 HOH P 44 382 382 HOH HOH . N 4 HOH P 45 383 383 HOH HOH . N 4 HOH P 46 384 384 HOH HOH . N 4 HOH P 47 385 385 HOH HOH . N 4 HOH P 48 386 386 HOH HOH . N 4 HOH P 49 387 387 HOH HOH . N 4 HOH P 50 388 388 HOH HOH . N 4 HOH P 51 389 389 HOH HOH . N 4 HOH P 52 390 390 HOH HOH . N 4 HOH P 53 391 391 HOH HOH . N 4 HOH P 54 392 392 HOH HOH . N 4 HOH P 55 393 393 HOH HOH . N 4 HOH P 56 394 394 HOH HOH . N 4 HOH P 57 395 395 HOH HOH . N 4 HOH P 58 396 396 HOH HOH . N 4 HOH P 59 397 397 HOH HOH . N 4 HOH P 60 398 398 HOH HOH . N 4 HOH P 61 399 399 HOH HOH . N 4 HOH P 62 400 400 HOH HOH . O 4 HOH O 1 339 339 HOH HOH . O 4 HOH O 2 340 340 HOH HOH . O 4 HOH O 3 341 341 HOH HOH . O 4 HOH O 4 342 342 HOH HOH . O 4 HOH O 5 343 343 HOH HOH . O 4 HOH O 6 344 344 HOH HOH . O 4 HOH O 7 345 345 HOH HOH . O 4 HOH O 8 346 346 HOH HOH . O 4 HOH O 9 347 347 HOH HOH . O 4 HOH O 10 348 348 HOH HOH . O 4 HOH O 11 349 349 HOH HOH . O 4 HOH O 12 350 350 HOH HOH . O 4 HOH O 13 351 351 HOH HOH . O 4 HOH O 14 352 352 HOH HOH . O 4 HOH O 15 353 353 HOH HOH . O 4 HOH O 16 354 354 HOH HOH . O 4 HOH O 17 355 355 HOH HOH . O 4 HOH O 18 356 356 HOH HOH . O 4 HOH O 19 357 357 HOH HOH . O 4 HOH O 20 358 358 HOH HOH . O 4 HOH O 21 359 359 HOH HOH . O 4 HOH O 22 360 360 HOH HOH . O 4 HOH O 23 361 361 HOH HOH . O 4 HOH O 24 362 362 HOH HOH . O 4 HOH O 25 363 363 HOH HOH . O 4 HOH O 26 364 364 HOH HOH . O 4 HOH O 27 365 365 HOH HOH . O 4 HOH O 28 366 366 HOH HOH . O 4 HOH O 29 367 367 HOH HOH . O 4 HOH O 30 368 368 HOH HOH . O 4 HOH O 31 369 369 HOH HOH . O 4 HOH O 32 370 370 HOH HOH . O 4 HOH O 33 371 371 HOH HOH . O 4 HOH O 34 372 372 HOH HOH . O 4 HOH O 35 373 373 HOH HOH . O 4 HOH O 36 374 374 HOH HOH . O 4 HOH O 37 375 375 HOH HOH . O 4 HOH O 38 376 376 HOH HOH . O 4 HOH O 39 377 377 HOH HOH . O 4 HOH O 40 378 378 HOH HOH . O 4 HOH O 41 379 379 HOH HOH . O 4 HOH O 42 380 380 HOH HOH . O 4 HOH O 43 381 381 HOH HOH . O 4 HOH O 44 382 382 HOH HOH . O 4 HOH O 45 383 383 HOH HOH . O 4 HOH O 46 384 384 HOH HOH . O 4 HOH O 47 385 385 HOH HOH . O 4 HOH O 48 386 386 HOH HOH . O 4 HOH O 49 387 387 HOH HOH . O 4 HOH O 50 388 388 HOH HOH . O 4 HOH O 51 389 389 HOH HOH . O 4 HOH O 52 390 390 HOH HOH . O 4 HOH O 53 391 391 HOH HOH . O 4 HOH O 54 392 392 HOH HOH . O 4 HOH O 55 393 393 HOH HOH . O 4 HOH O 56 394 394 HOH HOH . O 4 HOH O 57 395 395 HOH HOH . O 4 HOH O 58 396 396 HOH HOH . O 4 HOH O 59 397 397 HOH HOH . O 4 HOH O 60 398 398 HOH HOH . O 4 HOH O 61 399 399 HOH HOH . O 4 HOH O 62 400 400 HOH HOH . O 4 HOH O 63 401 401 HOH HOH . O 4 HOH O 64 402 402 HOH HOH . O 4 HOH O 65 403 403 HOH HOH . O 4 HOH O 66 404 404 HOH HOH . O 4 HOH O 67 405 405 HOH HOH . O 4 HOH O 68 406 406 HOH HOH . O 4 HOH O 69 407 407 HOH HOH . O 4 HOH O 70 408 408 HOH HOH . O 4 HOH O 71 409 409 HOH HOH . O 4 HOH O 72 410 410 HOH HOH . O 4 HOH O 73 411 411 HOH HOH . P 4 HOH R 1 339 339 HOH HOH . P 4 HOH R 2 340 340 HOH HOH . P 4 HOH R 3 341 341 HOH HOH . P 4 HOH R 4 342 342 HOH HOH . P 4 HOH R 5 343 343 HOH HOH . P 4 HOH R 6 344 344 HOH HOH . P 4 HOH R 7 345 345 HOH HOH . P 4 HOH R 8 346 346 HOH HOH . P 4 HOH R 9 347 347 HOH HOH . P 4 HOH R 10 348 348 HOH HOH . P 4 HOH R 11 349 349 HOH HOH . P 4 HOH R 12 350 350 HOH HOH . P 4 HOH R 13 351 351 HOH HOH . P 4 HOH R 14 352 352 HOH HOH . P 4 HOH R 15 353 353 HOH HOH . P 4 HOH R 16 354 354 HOH HOH . P 4 HOH R 17 355 355 HOH HOH . P 4 HOH R 18 356 356 HOH HOH . P 4 HOH R 19 357 357 HOH HOH . P 4 HOH R 20 358 358 HOH HOH . P 4 HOH R 21 359 359 HOH HOH . P 4 HOH R 22 360 360 HOH HOH . P 4 HOH R 23 361 361 HOH HOH . P 4 HOH R 24 362 362 HOH HOH . P 4 HOH R 25 363 363 HOH HOH . P 4 HOH R 26 364 364 HOH HOH . P 4 HOH R 27 365 365 HOH HOH . P 4 HOH R 28 366 366 HOH HOH . P 4 HOH R 29 367 367 HOH HOH . P 4 HOH R 30 368 368 HOH HOH . P 4 HOH R 31 369 369 HOH HOH . P 4 HOH R 32 370 370 HOH HOH . P 4 HOH R 33 371 371 HOH HOH . P 4 HOH R 34 372 372 HOH HOH . P 4 HOH R 35 373 373 HOH HOH . P 4 HOH R 36 374 374 HOH HOH . P 4 HOH R 37 375 375 HOH HOH . P 4 HOH R 38 376 376 HOH HOH . P 4 HOH R 39 377 377 HOH HOH . P 4 HOH R 40 378 378 HOH HOH . P 4 HOH R 41 379 379 HOH HOH . P 4 HOH R 42 380 380 HOH HOH . P 4 HOH R 43 381 381 HOH HOH . P 4 HOH R 44 382 382 HOH HOH . P 4 HOH R 45 383 383 HOH HOH . P 4 HOH R 46 384 384 HOH HOH . P 4 HOH R 47 385 385 HOH HOH . P 4 HOH R 48 386 386 HOH HOH . P 4 HOH R 49 387 387 HOH HOH . P 4 HOH R 50 388 388 HOH HOH . P 4 HOH R 51 389 389 HOH HOH . P 4 HOH R 52 390 390 HOH HOH . P 4 HOH R 53 391 391 HOH HOH . P 4 HOH R 54 392 392 HOH HOH . P 4 HOH R 55 393 393 HOH HOH . P 4 HOH R 56 394 394 HOH HOH . P 4 HOH R 57 395 395 HOH HOH . P 4 HOH R 58 396 396 HOH HOH . P 4 HOH R 59 397 397 HOH HOH . P 4 HOH R 60 398 398 HOH HOH . P 4 HOH R 61 399 399 HOH HOH . P 4 HOH R 62 400 400 HOH HOH . P 4 HOH R 63 401 401 HOH HOH . P 4 HOH R 64 402 402 HOH HOH . P 4 HOH R 65 403 403 HOH HOH . P 4 HOH R 66 404 404 HOH HOH . P 4 HOH R 67 405 405 HOH HOH . P 4 HOH R 68 406 406 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3PG . . . J 2 -13.688 -25.322 36.4 1 39.15 ? C1 3PG 338 O 1 HETATM 2 O O1 3PG . . . J 2 -14.454 -26.288 36.607 1 37.85 ? O1 3PG 338 O 1 HETATM 3 O O2 3PG . . . J 2 -13.261 -25.067 35.255 1 44.33 ? O2 3PG 338 O 1 HETATM 4 C C2 3PG . . . J 2 -13.312 -24.494 37.592 1 36.78 ? C2 3PG 338 O 1 HETATM 5 O O3 3PG . . . J 2 -14.341 -24.807 38.516 1 42.47 ? O3 3PG 338 O 1 HETATM 6 C C3 3PG . . . J 2 -13.397 -22.978 37.424 1 30.06 ? C3 3PG 338 O 1 HETATM 7 O O1P 3PG . . . J 2 -13.77 -22.405 38.692 1 28.44 ? O1P 3PG 338 O 1 HETATM 8 P P 3PG . . . J 2 -12.945 -21.296 39.57 1 29.94 ? P 3PG 338 O 1 HETATM 9 O O2P 3PG . . . J 2 -12.855 -20.016 38.773 1 22.32 ? O2P 3PG 338 O 1 HETATM 10 O O3P 3PG . . . J 2 -13.717 -21.148 40.859 1 35.92 ? O3P 3PG 338 O 1 HETATM 11 O O4P 3PG . . . J 2 -11.64 -22.037 39.688 1 33.07 ? O4P 3PG 338 O 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #