data_3L5I # _model_server_result.job_id SiLWYAz96MDB0l07YdNUsw _model_server_result.datetime_utc '2024-11-22 05:18:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":7}' # _entry.id 3L5I # _exptl.entry_id 3L5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L5I _cell.length_a 41.565 _cell.length_b 75.347 _cell.length_c 107.185 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 P N N ? 2 R N N ? 2 S N N ? 2 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 136 A CYS 436 1_555 A SG CYS 144 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C VAL 105 A VAL 405 1_555 A N MSE 106 A MSE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 106 A MSE 406 1_555 A N ASP 107 A ASP 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C ASN 115 A ASN 415 1_555 A N MSE 116 A MSE 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 116 A MSE 416 1_555 A N LEU 117 A LEU 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C TYR 266 A TYR 566 1_555 A N MSE 267 A MSE 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 267 A MSE 567 1_555 A N VAL 268 A VAL 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C ARG 269 A ARG 569 1_555 A N MSE 270 A MSE 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 270 A MSE 570 1_555 A N ALA 271 A ALA 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3L5I _atom_sites.fract_transf_matrix[1][1] 0.024059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1 1 EDO EDO . C 2 EDO A 1 2 2 EDO EDO . D 2 EDO A 1 3 3 EDO EDO . E 2 EDO A 1 4 4 EDO EDO . F 2 EDO A 1 5 5 EDO EDO . G 2 EDO A 1 6 6 EDO EDO . H 2 EDO A 1 7 7 EDO EDO . I 2 EDO A 1 8 8 EDO EDO . J 2 EDO A 1 9 9 EDO EDO . K 2 EDO A 1 10 10 EDO EDO . L 2 EDO A 1 11 11 EDO EDO . M 2 EDO A 1 12 12 EDO EDO . N 2 EDO A 1 13 13 EDO EDO . O 3 CL A 1 591 1 CL CL . P 2 EDO A 1 14 14 EDO EDO . Q 3 CL A 1 592 2 CL CL . R 2 EDO A 1 15 15 EDO EDO . S 2 EDO A 1 16 16 EDO EDO . T 3 CL A 1 593 3 CL CL . U 2 EDO A 1 17 17 EDO EDO . V 4 HOH A 1 18 18 HOH HOH . V 4 HOH A 2 20 20 HOH HOH . V 4 HOH A 3 23 23 HOH HOH . V 4 HOH A 4 24 24 HOH HOH . V 4 HOH A 5 26 26 HOH HOH . V 4 HOH A 6 27 27 HOH HOH . V 4 HOH A 7 28 28 HOH HOH . V 4 HOH A 8 30 30 HOH HOH . V 4 HOH A 9 31 31 HOH HOH . V 4 HOH A 10 32 32 HOH HOH . V 4 HOH A 11 34 34 HOH HOH . V 4 HOH A 12 37 37 HOH HOH . V 4 HOH A 13 38 38 HOH HOH . V 4 HOH A 14 39 39 HOH HOH . V 4 HOH A 15 40 40 HOH HOH . V 4 HOH A 16 45 45 HOH HOH . V 4 HOH A 17 46 46 HOH HOH . V 4 HOH A 18 47 47 HOH HOH . V 4 HOH A 19 51 51 HOH HOH . V 4 HOH A 20 53 53 HOH HOH . V 4 HOH A 21 54 54 HOH HOH . V 4 HOH A 22 55 55 HOH HOH . V 4 HOH A 23 56 56 HOH HOH . V 4 HOH A 24 57 57 HOH HOH . V 4 HOH A 25 59 59 HOH HOH . V 4 HOH A 26 62 62 HOH HOH . V 4 HOH A 27 65 65 HOH HOH . V 4 HOH A 28 66 66 HOH HOH . V 4 HOH A 29 68 68 HOH HOH . V 4 HOH A 30 69 69 HOH HOH . V 4 HOH A 31 70 70 HOH HOH . V 4 HOH A 32 71 71 HOH HOH . V 4 HOH A 33 72 72 HOH HOH . V 4 HOH A 34 73 73 HOH HOH . V 4 HOH A 35 74 74 HOH HOH . V 4 HOH A 36 75 75 HOH HOH . V 4 HOH A 37 78 78 HOH HOH . V 4 HOH A 38 79 79 HOH HOH . V 4 HOH A 39 82 82 HOH HOH . V 4 HOH A 40 83 83 HOH HOH . V 4 HOH A 41 88 88 HOH HOH . V 4 HOH A 42 89 89 HOH HOH . V 4 HOH A 43 90 90 HOH HOH . V 4 HOH A 44 92 92 HOH HOH . V 4 HOH A 45 94 94 HOH HOH . V 4 HOH A 46 95 95 HOH HOH . V 4 HOH A 47 99 99 HOH HOH . V 4 HOH A 48 101 101 HOH HOH . V 4 HOH A 49 102 102 HOH HOH . V 4 HOH A 50 104 104 HOH HOH . V 4 HOH A 51 105 105 HOH HOH . V 4 HOH A 52 109 109 HOH HOH . V 4 HOH A 53 111 111 HOH HOH . V 4 HOH A 54 112 112 HOH HOH . V 4 HOH A 55 115 115 HOH HOH . V 4 HOH A 56 117 117 HOH HOH . V 4 HOH A 57 118 118 HOH HOH . V 4 HOH A 58 123 123 HOH HOH . V 4 HOH A 59 125 125 HOH HOH . V 4 HOH A 60 126 126 HOH HOH . V 4 HOH A 61 127 127 HOH HOH . V 4 HOH A 62 133 133 HOH HOH . V 4 HOH A 63 136 136 HOH HOH . V 4 HOH A 64 139 139 HOH HOH . V 4 HOH A 65 142 142 HOH HOH . V 4 HOH A 66 143 143 HOH HOH . V 4 HOH A 67 147 147 HOH HOH . V 4 HOH A 68 148 148 HOH HOH . V 4 HOH A 69 155 155 HOH HOH . V 4 HOH A 70 156 156 HOH HOH . V 4 HOH A 71 159 159 HOH HOH . V 4 HOH A 72 162 162 HOH HOH . V 4 HOH A 73 163 163 HOH HOH . V 4 HOH A 74 164 164 HOH HOH . V 4 HOH A 75 165 165 HOH HOH . V 4 HOH A 76 166 166 HOH HOH . V 4 HOH A 77 170 170 HOH HOH . V 4 HOH A 78 172 172 HOH HOH . V 4 HOH A 79 174 174 HOH HOH . V 4 HOH A 80 175 175 HOH HOH . V 4 HOH A 81 179 179 HOH HOH . V 4 HOH A 82 183 183 HOH HOH . V 4 HOH A 83 184 184 HOH HOH . V 4 HOH A 84 185 185 HOH HOH . V 4 HOH A 85 186 186 HOH HOH . V 4 HOH A 86 188 188 HOH HOH . V 4 HOH A 87 190 190 HOH HOH . V 4 HOH A 88 191 191 HOH HOH . V 4 HOH A 89 193 193 HOH HOH . V 4 HOH A 90 197 197 HOH HOH . V 4 HOH A 91 198 198 HOH HOH . V 4 HOH A 92 200 200 HOH HOH . V 4 HOH A 93 201 201 HOH HOH . V 4 HOH A 94 202 202 HOH HOH . V 4 HOH A 95 203 203 HOH HOH . V 4 HOH A 96 204 204 HOH HOH . V 4 HOH A 97 207 207 HOH HOH . V 4 HOH A 98 210 210 HOH HOH . V 4 HOH A 99 211 211 HOH HOH . V 4 HOH A 100 213 213 HOH HOH . V 4 HOH A 101 217 217 HOH HOH . V 4 HOH A 102 218 218 HOH HOH . V 4 HOH A 103 223 223 HOH HOH . V 4 HOH A 104 224 224 HOH HOH . V 4 HOH A 105 229 229 HOH HOH . V 4 HOH A 106 231 231 HOH HOH . V 4 HOH A 107 234 234 HOH HOH . V 4 HOH A 108 241 241 HOH HOH . V 4 HOH A 109 242 242 HOH HOH . V 4 HOH A 110 246 246 HOH HOH . V 4 HOH A 111 247 247 HOH HOH . V 4 HOH A 112 256 256 HOH HOH . V 4 HOH A 113 260 260 HOH HOH . V 4 HOH A 114 262 262 HOH HOH . V 4 HOH A 115 266 266 HOH HOH . V 4 HOH A 116 270 270 HOH HOH . V 4 HOH A 117 271 271 HOH HOH . V 4 HOH A 118 272 272 HOH HOH . V 4 HOH A 119 273 273 HOH HOH . V 4 HOH A 120 274 274 HOH HOH . V 4 HOH A 121 275 275 HOH HOH . V 4 HOH A 122 276 276 HOH HOH . V 4 HOH A 123 277 277 HOH HOH . V 4 HOH A 124 278 278 HOH HOH . V 4 HOH A 125 279 279 HOH HOH . V 4 HOH A 126 280 280 HOH HOH . V 4 HOH A 127 281 281 HOH HOH . V 4 HOH A 128 282 282 HOH HOH . V 4 HOH A 129 283 283 HOH HOH . V 4 HOH A 130 285 285 HOH HOH . V 4 HOH A 131 286 286 HOH HOH . V 4 HOH A 132 287 287 HOH HOH . V 4 HOH A 133 288 288 HOH HOH . V 4 HOH A 134 289 289 HOH HOH . V 4 HOH A 135 290 290 HOH HOH . V 4 HOH A 136 291 291 HOH HOH . V 4 HOH A 137 292 292 HOH HOH . V 4 HOH A 138 294 294 HOH HOH . V 4 HOH A 139 295 295 HOH HOH . V 4 HOH A 140 296 296 HOH HOH . V 4 HOH A 141 298 298 HOH HOH . V 4 HOH A 142 299 299 HOH HOH . V 4 HOH A 143 300 300 HOH HOH . V 4 HOH A 144 594 2 HOH HOH . V 4 HOH A 145 595 3 HOH HOH . V 4 HOH A 146 596 4 HOH HOH . V 4 HOH A 147 597 5 HOH HOH . V 4 HOH A 148 598 6 HOH HOH . V 4 HOH A 149 599 9 HOH HOH . V 4 HOH A 150 600 12 HOH HOH . V 4 HOH A 151 601 13 HOH HOH . V 4 HOH A 152 602 14 HOH HOH . V 4 HOH A 153 603 15 HOH HOH . V 4 HOH A 154 604 17 HOH HOH . V 4 HOH A 155 605 301 HOH HOH . V 4 HOH A 156 606 302 HOH HOH . V 4 HOH A 157 607 305 HOH HOH . V 4 HOH A 158 608 306 HOH HOH . V 4 HOH A 159 609 307 HOH HOH . V 4 HOH A 160 610 308 HOH HOH . V 4 HOH A 161 611 309 HOH HOH . V 4 HOH A 162 612 311 HOH HOH . V 4 HOH A 163 613 312 HOH HOH . V 4 HOH A 164 614 313 HOH HOH . V 4 HOH A 165 615 314 HOH HOH . V 4 HOH A 166 616 315 HOH HOH . V 4 HOH A 167 617 317 HOH HOH . V 4 HOH A 168 618 318 HOH HOH . V 4 HOH A 169 619 319 HOH HOH . V 4 HOH A 170 620 320 HOH HOH . V 4 HOH A 171 621 324 HOH HOH . V 4 HOH A 172 622 325 HOH HOH . V 4 HOH A 173 623 326 HOH HOH . V 4 HOH A 174 624 327 HOH HOH . V 4 HOH A 175 625 328 HOH HOH . V 4 HOH A 176 626 329 HOH HOH . V 4 HOH A 177 627 331 HOH HOH . V 4 HOH A 178 628 332 HOH HOH . V 4 HOH A 179 629 333 HOH HOH . V 4 HOH A 180 630 334 HOH HOH . V 4 HOH A 181 631 337 HOH HOH . V 4 HOH A 182 632 338 HOH HOH . V 4 HOH A 183 633 341 HOH HOH . V 4 HOH A 184 634 342 HOH HOH . V 4 HOH A 185 635 344 HOH HOH . V 4 HOH A 186 636 347 HOH HOH . V 4 HOH A 187 637 348 HOH HOH . V 4 HOH A 188 638 349 HOH HOH . V 4 HOH A 189 639 350 HOH HOH . V 4 HOH A 190 640 351 HOH HOH . V 4 HOH A 191 641 352 HOH HOH . V 4 HOH A 192 642 353 HOH HOH . V 4 HOH A 193 643 354 HOH HOH . V 4 HOH A 194 644 355 HOH HOH . V 4 HOH A 195 645 356 HOH HOH . V 4 HOH A 196 646 357 HOH HOH . V 4 HOH A 197 647 358 HOH HOH . V 4 HOH A 198 648 359 HOH HOH . V 4 HOH A 199 649 360 HOH HOH . V 4 HOH A 200 650 361 HOH HOH . V 4 HOH A 201 651 362 HOH HOH . V 4 HOH A 202 652 364 HOH HOH . V 4 HOH A 203 653 365 HOH HOH . V 4 HOH A 204 654 366 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 2 18.631 34.507 73.84 1 42.17 ? C1 EDO 7 A 1 HETATM 2 O O1 EDO . . . H 2 17.634 33.772 73.119 1 54.22 ? O1 EDO 7 A 1 HETATM 3 C C2 EDO . . . H 2 19.901 34.587 73 1 47.27 ? C2 EDO 7 A 1 HETATM 4 O O2 EDO . . . H 2 20.718 35.665 73.471 1 40.5 ? O2 EDO 7 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #