data_3L5P
#
_model_server_result.job_id            aKvCgRInWdYz5ByMZu0u3Q 
_model_server_result.datetime_utc      '2024-12-02 09:43:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l5p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":123}' 
#
_entry.id    3L5P 
#
_exptl.entry_id    3L5P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3L5P 
_cell.length_a            67.675 
_cell.length_b            67.854 
_cell.length_c            89.009 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L5P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 H N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 154 n n 
C1 C2 GOL sing 155 n n 
C1 H11 GOL sing 156 n n 
C1 H12 GOL sing 157 n n 
O1 HO1 GOL sing 158 n n 
C2 O2 GOL sing 159 n n 
C2 C3 GOL sing 160 n n 
C2 H2 GOL sing 161 n n 
O2 HO2 GOL sing 162 n n 
C3 O3 GOL sing 163 n n 
C3 H31 GOL sing 164 n n 
C3 H32 GOL sing 165 n n 
O3 HO3 GOL sing 166 n n 
#
_atom_sites.entry_id                     3L5P 
_atom_sites.fract_transf_matrix[1][1]    0.014777 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014738 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011235 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 428 A 1 123 123 428 428 . 
E 3 GOL A 1 124 124 GOL GOL . 
F 3 GOL B 1 123 123 GOL GOL . 
G 4 SO4 B 1 124 124 SO4 SO4 . 
H 3 GOL C 1 123 123 GOL GOL . 
I 4 SO4 C 1 124 124 SO4 SO4 . 
J 5 HOH A 1 125 3 HOH HOH . 
J 5 HOH A 2 126 4 HOH HOH . 
J 5 HOH A 3 127 127 HOH HOH . 
J 5 HOH A 4 128 8 HOH HOH . 
J 5 HOH A 5 129 9 HOH HOH . 
J 5 HOH A 6 130 12 HOH HOH . 
J 5 HOH A 7 131 16 HOH HOH . 
J 5 HOH A 8 132 132 HOH HOH . 
J 5 HOH A 9 133 17 HOH HOH . 
J 5 HOH A 10 134 19 HOH HOH . 
J 5 HOH A 11 135 23 HOH HOH . 
J 5 HOH A 12 136 136 HOH HOH . 
J 5 HOH A 13 137 26 HOH HOH . 
J 5 HOH A 14 138 138 HOH HOH . 
J 5 HOH A 15 139 28 HOH HOH . 
J 5 HOH A 16 140 34 HOH HOH . 
J 5 HOH A 17 141 37 HOH HOH . 
J 5 HOH A 18 142 40 HOH HOH . 
J 5 HOH A 19 143 143 HOH HOH . 
J 5 HOH A 20 144 144 HOH HOH . 
J 5 HOH A 21 145 145 HOH HOH . 
J 5 HOH A 22 146 41 HOH HOH . 
J 5 HOH A 23 147 147 HOH HOH . 
J 5 HOH A 24 148 148 HOH HOH . 
J 5 HOH A 25 149 42 HOH HOH . 
J 5 HOH A 26 150 43 HOH HOH . 
J 5 HOH A 27 151 44 HOH HOH . 
J 5 HOH A 28 152 47 HOH HOH . 
J 5 HOH A 29 153 49 HOH HOH . 
J 5 HOH A 30 154 51 HOH HOH . 
J 5 HOH A 31 155 155 HOH HOH . 
J 5 HOH A 32 156 62 HOH HOH . 
J 5 HOH A 33 157 64 HOH HOH . 
J 5 HOH A 34 158 65 HOH HOH . 
J 5 HOH A 35 159 70 HOH HOH . 
J 5 HOH A 36 160 78 HOH HOH . 
J 5 HOH A 37 161 79 HOH HOH . 
J 5 HOH A 38 162 80 HOH HOH . 
J 5 HOH A 39 163 163 HOH HOH . 
J 5 HOH A 40 164 81 HOH HOH . 
J 5 HOH A 41 165 165 HOH HOH . 
J 5 HOH A 42 166 166 HOH HOH . 
J 5 HOH A 43 167 83 HOH HOH . 
J 5 HOH A 44 168 85 HOH HOH . 
J 5 HOH A 45 169 87 HOH HOH . 
J 5 HOH A 46 170 88 HOH HOH . 
J 5 HOH A 47 171 91 HOH HOH . 
J 5 HOH A 48 172 93 HOH HOH . 
J 5 HOH A 49 173 173 HOH HOH . 
J 5 HOH A 50 174 95 HOH HOH . 
J 5 HOH A 51 175 96 HOH HOH . 
J 5 HOH A 52 176 176 HOH HOH . 
J 5 HOH A 53 177 101 HOH HOH . 
J 5 HOH A 54 178 105 HOH HOH . 
J 5 HOH A 55 179 106 HOH HOH . 
J 5 HOH A 56 180 107 HOH HOH . 
J 5 HOH A 57 181 108 HOH HOH . 
J 5 HOH A 58 182 112 HOH HOH . 
J 5 HOH A 59 183 116 HOH HOH . 
J 5 HOH A 60 184 118 HOH HOH . 
J 5 HOH A 61 185 122 HOH HOH . 
J 5 HOH A 62 186 186 HOH HOH . 
J 5 HOH A 63 187 123 HOH HOH . 
J 5 HOH A 64 192 192 HOH HOH . 
J 5 HOH A 65 194 194 HOH HOH . 
J 5 HOH A 66 196 196 HOH HOH . 
J 5 HOH A 67 197 197 HOH HOH . 
J 5 HOH A 68 202 202 HOH HOH . 
J 5 HOH A 69 205 205 HOH HOH . 
J 5 HOH A 70 211 211 HOH HOH . 
J 5 HOH A 71 212 212 HOH HOH . 
J 5 HOH A 72 215 215 HOH HOH . 
J 5 HOH A 73 220 220 HOH HOH . 
J 5 HOH A 74 225 225 HOH HOH . 
J 5 HOH A 75 226 226 HOH HOH . 
J 5 HOH A 76 230 230 HOH HOH . 
J 5 HOH A 77 234 234 HOH HOH . 
J 5 HOH A 78 238 238 HOH HOH . 
J 5 HOH A 79 242 242 HOH HOH . 
J 5 HOH A 80 244 244 HOH HOH . 
K 5 HOH B 1 125 1 HOH HOH . 
K 5 HOH B 2 126 2 HOH HOH . 
K 5 HOH B 3 127 11 HOH HOH . 
K 5 HOH B 4 128 13 HOH HOH . 
K 5 HOH B 5 129 129 HOH HOH . 
K 5 HOH B 6 130 130 HOH HOH . 
K 5 HOH B 7 131 131 HOH HOH . 
K 5 HOH B 8 132 14 HOH HOH . 
K 5 HOH B 9 133 133 HOH HOH . 
K 5 HOH B 10 134 15 HOH HOH . 
K 5 HOH B 11 135 135 HOH HOH . 
K 5 HOH B 12 136 20 HOH HOH . 
K 5 HOH B 13 137 21 HOH HOH . 
K 5 HOH B 14 138 24 HOH HOH . 
K 5 HOH B 15 139 139 HOH HOH . 
K 5 HOH B 16 140 140 HOH HOH . 
K 5 HOH B 17 141 29 HOH HOH . 
K 5 HOH B 18 142 142 HOH HOH . 
K 5 HOH B 19 143 30 HOH HOH . 
K 5 HOH B 20 144 31 HOH HOH . 
K 5 HOH B 21 145 32 HOH HOH . 
K 5 HOH B 22 146 146 HOH HOH . 
K 5 HOH B 23 147 33 HOH HOH . 
K 5 HOH B 24 148 36 HOH HOH . 
K 5 HOH B 25 149 149 HOH HOH . 
K 5 HOH B 26 150 150 HOH HOH . 
K 5 HOH B 27 151 151 HOH HOH . 
K 5 HOH B 28 152 152 HOH HOH . 
K 5 HOH B 29 153 153 HOH HOH . 
K 5 HOH B 30 154 154 HOH HOH . 
K 5 HOH B 31 155 38 HOH HOH . 
K 5 HOH B 32 156 156 HOH HOH . 
K 5 HOH B 33 157 157 HOH HOH . 
K 5 HOH B 34 158 158 HOH HOH . 
K 5 HOH B 35 159 159 HOH HOH . 
K 5 HOH B 36 160 160 HOH HOH . 
K 5 HOH B 37 161 45 HOH HOH . 
K 5 HOH B 38 162 162 HOH HOH . 
K 5 HOH B 39 163 46 HOH HOH . 
K 5 HOH B 40 164 50 HOH HOH . 
K 5 HOH B 41 165 54 HOH HOH . 
K 5 HOH B 42 166 57 HOH HOH . 
K 5 HOH B 43 167 58 HOH HOH . 
K 5 HOH B 44 168 59 HOH HOH . 
K 5 HOH B 45 169 60 HOH HOH . 
K 5 HOH B 46 170 170 HOH HOH . 
K 5 HOH B 47 171 171 HOH HOH . 
K 5 HOH B 48 172 66 HOH HOH . 
K 5 HOH B 49 173 68 HOH HOH . 
K 5 HOH B 50 174 71 HOH HOH . 
K 5 HOH B 51 175 73 HOH HOH . 
K 5 HOH B 52 176 74 HOH HOH . 
K 5 HOH B 53 177 76 HOH HOH . 
K 5 HOH B 54 178 178 HOH HOH . 
K 5 HOH B 55 179 179 HOH HOH . 
K 5 HOH B 56 180 180 HOH HOH . 
K 5 HOH B 57 181 181 HOH HOH . 
K 5 HOH B 58 182 182 HOH HOH . 
K 5 HOH B 59 183 183 HOH HOH . 
K 5 HOH B 60 184 184 HOH HOH . 
K 5 HOH B 61 185 77 HOH HOH . 
K 5 HOH B 62 186 94 HOH HOH . 
K 5 HOH B 63 187 187 HOH HOH . 
K 5 HOH B 64 188 97 HOH HOH . 
K 5 HOH B 65 189 189 HOH HOH . 
K 5 HOH B 66 190 102 HOH HOH . 
K 5 HOH B 67 191 191 HOH HOH . 
K 5 HOH B 68 192 117 HOH HOH . 
K 5 HOH B 69 193 193 HOH HOH . 
K 5 HOH B 70 194 119 HOH HOH . 
K 5 HOH B 71 195 195 HOH HOH . 
K 5 HOH B 72 196 120 HOH HOH . 
K 5 HOH B 73 197 124 HOH HOH . 
K 5 HOH B 74 198 198 HOH HOH . 
K 5 HOH B 75 199 199 HOH HOH . 
K 5 HOH B 76 200 200 HOH HOH . 
K 5 HOH B 77 204 204 HOH HOH . 
K 5 HOH B 78 206 206 HOH HOH . 
K 5 HOH B 79 214 214 HOH HOH . 
K 5 HOH B 80 217 217 HOH HOH . 
K 5 HOH B 81 219 219 HOH HOH . 
K 5 HOH B 82 229 229 HOH HOH . 
K 5 HOH B 83 231 231 HOH HOH . 
K 5 HOH B 84 233 233 HOH HOH . 
K 5 HOH B 85 235 235 HOH HOH . 
K 5 HOH B 86 239 239 HOH HOH . 
K 5 HOH B 87 240 240 HOH HOH . 
K 5 HOH B 88 243 243 HOH HOH . 
K 5 HOH B 89 245 245 HOH HOH . 
L 5 HOH C 1 125 125 HOH HOH . 
L 5 HOH C 2 126 126 HOH HOH . 
L 5 HOH C 3 127 5 HOH HOH . 
L 5 HOH C 4 128 128 HOH HOH . 
L 5 HOH C 5 129 6 HOH HOH . 
L 5 HOH C 6 130 7 HOH HOH . 
L 5 HOH C 7 131 10 HOH HOH . 
L 5 HOH C 8 132 18 HOH HOH . 
L 5 HOH C 9 133 22 HOH HOH . 
L 5 HOH C 10 134 134 HOH HOH . 
L 5 HOH C 11 135 25 HOH HOH . 
L 5 HOH C 12 136 27 HOH HOH . 
L 5 HOH C 13 137 137 HOH HOH . 
L 5 HOH C 14 138 35 HOH HOH . 
L 5 HOH C 15 139 39 HOH HOH . 
L 5 HOH C 16 140 48 HOH HOH . 
L 5 HOH C 17 141 141 HOH HOH . 
L 5 HOH C 18 142 52 HOH HOH . 
L 5 HOH C 19 143 53 HOH HOH . 
L 5 HOH C 20 144 55 HOH HOH . 
L 5 HOH C 21 145 56 HOH HOH . 
L 5 HOH C 22 146 61 HOH HOH . 
L 5 HOH C 23 147 63 HOH HOH . 
L 5 HOH C 24 148 67 HOH HOH . 
L 5 HOH C 25 149 69 HOH HOH . 
L 5 HOH C 26 150 72 HOH HOH . 
L 5 HOH C 27 151 75 HOH HOH . 
L 5 HOH C 28 152 82 HOH HOH . 
L 5 HOH C 29 153 84 HOH HOH . 
L 5 HOH C 30 154 86 HOH HOH . 
L 5 HOH C 31 155 89 HOH HOH . 
L 5 HOH C 32 156 90 HOH HOH . 
L 5 HOH C 33 157 92 HOH HOH . 
L 5 HOH C 34 158 98 HOH HOH . 
L 5 HOH C 35 159 99 HOH HOH . 
L 5 HOH C 36 160 100 HOH HOH . 
L 5 HOH C 37 161 161 HOH HOH . 
L 5 HOH C 38 162 103 HOH HOH . 
L 5 HOH C 39 163 104 HOH HOH . 
L 5 HOH C 40 164 164 HOH HOH . 
L 5 HOH C 41 165 109 HOH HOH . 
L 5 HOH C 42 166 110 HOH HOH . 
L 5 HOH C 43 167 167 HOH HOH . 
L 5 HOH C 44 168 168 HOH HOH . 
L 5 HOH C 45 169 169 HOH HOH . 
L 5 HOH C 46 170 111 HOH HOH . 
L 5 HOH C 47 171 113 HOH HOH . 
L 5 HOH C 48 172 172 HOH HOH . 
L 5 HOH C 49 173 114 HOH HOH . 
L 5 HOH C 50 174 174 HOH HOH . 
L 5 HOH C 51 175 175 HOH HOH . 
L 5 HOH C 52 176 115 HOH HOH . 
L 5 HOH C 53 177 177 HOH HOH . 
L 5 HOH C 54 178 121 HOH HOH . 
L 5 HOH C 55 185 185 HOH HOH . 
L 5 HOH C 56 188 188 HOH HOH . 
L 5 HOH C 57 190 190 HOH HOH . 
L 5 HOH C 58 201 201 HOH HOH . 
L 5 HOH C 59 203 203 HOH HOH . 
L 5 HOH C 60 207 207 HOH HOH . 
L 5 HOH C 61 208 208 HOH HOH . 
L 5 HOH C 62 209 209 HOH HOH . 
L 5 HOH C 63 210 210 HOH HOH . 
L 5 HOH C 64 213 213 HOH HOH . 
L 5 HOH C 65 216 216 HOH HOH . 
L 5 HOH C 66 218 218 HOH HOH . 
L 5 HOH C 67 221 221 HOH HOH . 
L 5 HOH C 68 222 222 HOH HOH . 
L 5 HOH C 69 223 223 HOH HOH . 
L 5 HOH C 70 224 224 HOH HOH . 
L 5 HOH C 71 227 227 HOH HOH . 
L 5 HOH C 72 228 228 HOH HOH . 
L 5 HOH C 73 236 236 HOH HOH . 
L 5 HOH C 74 237 237 HOH HOH . 
L 5 HOH C 75 241 241 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 19.263 -24.29 -4.213 1 31.84 ? C1 GOL 123 C 1 
HETATM 2 O O1 GOL . . . H 3 18.649 -24.191 -5.501 1 28.51 ? O1 GOL 123 C 1 
HETATM 3 C C2 GOL . . . H 3 20.72 -23.834 -4.305 1 32.57 ? C2 GOL 123 C 1 
HETATM 4 O O2 GOL . . . H 3 21.401 -24.593 -5.307 1 33.82 ? O2 GOL 123 C 1 
HETATM 5 C C3 GOL . . . H 3 21.403 -24.029 -2.95 1 32.99 ? C3 GOL 123 C 1 
HETATM 6 O O3 GOL . . . H 3 22.787 -23.685 -3.055 1 30.75 ? O3 GOL 123 C 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#