data_3L6B
#
_model_server_result.job_id            -AIuV5YaX_XvKSNcxvD5dw 
_model_server_result.datetime_utc      '2024-11-08 18:01:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l6b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":347}' 
#
_entry.id    3L6B 
#
_exptl.entry_id    3L6B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3L6B 
_cell.length_a            54.57 
_cell.length_b            84.29 
_cell.length_c            69.98 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L6B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 84.29 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 56 A LYS 56 1_555 B C4A PLP . A PLP 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.539 ? 
metalc ? metalc1 A OE2 GLU 210 A GLU 210 1_555 C MN MN . A MN 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc2 A O ALA 214 A ALA 214 1_555 C MN MN . A MN 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc3 A OD1 ASP 216 A ASP 216 1_555 C MN MN . A MN 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc4 C MN MN . A MN 347 1_555 E O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc5 C MN MN . A MN 347 1_555 E O HOH . A HOH 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc6 C MN MN . A MN 347 1_555 E O HOH . A HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3L6B 
_atom_sites.fract_transf_matrix[1][1]    0.018325 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011864 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01429 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLP A 1 350 350 PLP PLP . 
C 3 MN A 1 347 347 MN MN . 
D 4 MLI A 1 348 348 MLI MLI . 
E 5 HOH A 1 349 349 HOH HOH . 
E 5 HOH A 2 351 351 HOH HOH . 
E 5 HOH A 3 352 352 HOH HOH . 
E 5 HOH A 4 353 353 HOH HOH . 
E 5 HOH A 5 354 354 HOH HOH . 
E 5 HOH A 6 355 355 HOH HOH . 
E 5 HOH A 7 356 356 HOH HOH . 
E 5 HOH A 8 357 357 HOH HOH . 
E 5 HOH A 9 358 358 HOH HOH . 
E 5 HOH A 10 359 359 HOH HOH . 
E 5 HOH A 11 360 360 HOH HOH . 
E 5 HOH A 12 361 361 HOH HOH . 
E 5 HOH A 13 362 362 HOH HOH . 
E 5 HOH A 14 363 363 HOH HOH . 
E 5 HOH A 15 364 364 HOH HOH . 
E 5 HOH A 16 365 365 HOH HOH . 
E 5 HOH A 17 366 366 HOH HOH . 
E 5 HOH A 18 367 367 HOH HOH . 
E 5 HOH A 19 368 368 HOH HOH . 
E 5 HOH A 20 369 369 HOH HOH . 
E 5 HOH A 21 370 370 HOH HOH . 
E 5 HOH A 22 371 371 HOH HOH . 
E 5 HOH A 23 372 372 HOH HOH . 
E 5 HOH A 24 373 373 HOH HOH . 
E 5 HOH A 25 374 374 HOH HOH . 
E 5 HOH A 26 375 375 HOH HOH . 
E 5 HOH A 27 376 376 HOH HOH . 
E 5 HOH A 28 377 377 HOH HOH . 
E 5 HOH A 29 378 378 HOH HOH . 
E 5 HOH A 30 379 379 HOH HOH . 
E 5 HOH A 31 380 380 HOH HOH . 
E 5 HOH A 32 381 381 HOH HOH . 
E 5 HOH A 33 382 382 HOH HOH . 
E 5 HOH A 34 383 383 HOH HOH . 
E 5 HOH A 35 384 384 HOH HOH . 
E 5 HOH A 36 385 385 HOH HOH . 
E 5 HOH A 37 386 386 HOH HOH . 
E 5 HOH A 38 387 387 HOH HOH . 
E 5 HOH A 39 388 388 HOH HOH . 
E 5 HOH A 40 389 389 HOH HOH . 
E 5 HOH A 41 390 390 HOH HOH . 
E 5 HOH A 42 391 391 HOH HOH . 
E 5 HOH A 43 392 392 HOH HOH . 
E 5 HOH A 44 393 393 HOH HOH . 
E 5 HOH A 45 394 394 HOH HOH . 
E 5 HOH A 46 395 395 HOH HOH . 
E 5 HOH A 47 396 396 HOH HOH . 
E 5 HOH A 48 397 397 HOH HOH . 
E 5 HOH A 49 398 398 HOH HOH . 
E 5 HOH A 50 399 399 HOH HOH . 
E 5 HOH A 51 400 400 HOH HOH . 
E 5 HOH A 52 401 401 HOH HOH . 
E 5 HOH A 53 402 402 HOH HOH . 
E 5 HOH A 54 403 403 HOH HOH . 
E 5 HOH A 55 404 404 HOH HOH . 
E 5 HOH A 56 405 405 HOH HOH . 
E 5 HOH A 57 406 406 HOH HOH . 
E 5 HOH A 58 407 407 HOH HOH . 
E 5 HOH A 59 408 408 HOH HOH . 
E 5 HOH A 60 409 409 HOH HOH . 
E 5 HOH A 61 410 410 HOH HOH . 
E 5 HOH A 62 411 411 HOH HOH . 
E 5 HOH A 63 412 412 HOH HOH . 
E 5 HOH A 64 413 413 HOH HOH . 
E 5 HOH A 65 414 414 HOH HOH . 
E 5 HOH A 66 415 415 HOH HOH . 
E 5 HOH A 67 416 416 HOH HOH . 
E 5 HOH A 68 417 417 HOH HOH . 
E 5 HOH A 69 418 418 HOH HOH . 
E 5 HOH A 70 419 419 HOH HOH . 
E 5 HOH A 71 420 420 HOH HOH . 
E 5 HOH A 72 421 421 HOH HOH . 
E 5 HOH A 73 422 422 HOH HOH . 
E 5 HOH A 74 423 423 HOH HOH . 
E 5 HOH A 75 424 424 HOH HOH . 
E 5 HOH A 76 425 425 HOH HOH . 
E 5 HOH A 77 426 426 HOH HOH . 
E 5 HOH A 78 427 427 HOH HOH . 
E 5 HOH A 79 428 428 HOH HOH . 
E 5 HOH A 80 429 429 HOH HOH . 
E 5 HOH A 81 430 430 HOH HOH . 
E 5 HOH A 82 431 431 HOH HOH . 
E 5 HOH A 83 432 432 HOH HOH . 
E 5 HOH A 84 433 433 HOH HOH . 
E 5 HOH A 85 434 434 HOH HOH . 
E 5 HOH A 86 435 435 HOH HOH . 
E 5 HOH A 87 436 436 HOH HOH . 
E 5 HOH A 88 437 437 HOH HOH . 
E 5 HOH A 89 438 438 HOH HOH . 
E 5 HOH A 90 439 439 HOH HOH . 
E 5 HOH A 91 440 440 HOH HOH . 
E 5 HOH A 92 441 441 HOH HOH . 
E 5 HOH A 93 442 442 HOH HOH . 
E 5 HOH A 94 443 443 HOH HOH . 
E 5 HOH A 95 444 444 HOH HOH . 
E 5 HOH A 96 445 445 HOH HOH . 
E 5 HOH A 97 446 446 HOH HOH . 
E 5 HOH A 98 447 447 HOH HOH . 
E 5 HOH A 99 448 448 HOH HOH . 
E 5 HOH A 100 449 449 HOH HOH . 
E 5 HOH A 101 450 450 HOH HOH . 
E 5 HOH A 102 451 451 HOH HOH . 
E 5 HOH A 103 452 452 HOH HOH . 
E 5 HOH A 104 453 453 HOH HOH . 
E 5 HOH A 105 454 454 HOH HOH . 
E 5 HOH A 106 455 455 HOH HOH . 
E 5 HOH A 107 456 456 HOH HOH . 
E 5 HOH A 108 457 457 HOH HOH . 
E 5 HOH A 109 458 458 HOH HOH . 
E 5 HOH A 110 459 459 HOH HOH . 
E 5 HOH A 111 460 460 HOH HOH . 
E 5 HOH A 112 461 461 HOH HOH . 
E 5 HOH A 113 462 462 HOH HOH . 
E 5 HOH A 114 463 463 HOH HOH . 
E 5 HOH A 115 464 464 HOH HOH . 
E 5 HOH A 116 465 465 HOH HOH . 
E 5 HOH A 117 466 466 HOH HOH . 
E 5 HOH A 118 467 467 HOH HOH . 
E 5 HOH A 119 468 468 HOH HOH . 
E 5 HOH A 120 469 469 HOH HOH . 
E 5 HOH A 121 470 470 HOH HOH . 
E 5 HOH A 122 471 471 HOH HOH . 
E 5 HOH A 123 472 472 HOH HOH . 
E 5 HOH A 124 473 473 HOH HOH . 
E 5 HOH A 125 474 474 HOH HOH . 
E 5 HOH A 126 475 475 HOH HOH . 
E 5 HOH A 127 476 476 HOH HOH . 
E 5 HOH A 128 477 477 HOH HOH . 
E 5 HOH A 129 478 478 HOH HOH . 
E 5 HOH A 130 479 479 HOH HOH . 
E 5 HOH A 131 480 480 HOH HOH . 
E 5 HOH A 132 481 481 HOH HOH . 
E 5 HOH A 133 482 482 HOH HOH . 
E 5 HOH A 134 483 483 HOH HOH . 
E 5 HOH A 135 484 484 HOH HOH . 
E 5 HOH A 136 485 485 HOH HOH . 
E 5 HOH A 137 486 486 HOH HOH . 
E 5 HOH A 138 487 487 HOH HOH . 
E 5 HOH A 139 488 488 HOH HOH . 
E 5 HOH A 140 489 489 HOH HOH . 
E 5 HOH A 141 490 490 HOH HOH . 
E 5 HOH A 142 491 491 HOH HOH . 
E 5 HOH A 143 492 492 HOH HOH . 
E 5 HOH A 144 493 493 HOH HOH . 
E 5 HOH A 145 494 494 HOH HOH . 
E 5 HOH A 146 495 495 HOH HOH . 
E 5 HOH A 147 496 496 HOH HOH . 
E 5 HOH A 148 497 497 HOH HOH . 
E 5 HOH A 149 498 498 HOH HOH . 
E 5 HOH A 150 499 499 HOH HOH . 
E 5 HOH A 151 500 500 HOH HOH . 
E 5 HOH A 152 502 502 HOH HOH . 
E 5 HOH A 153 503 503 HOH HOH . 
E 5 HOH A 154 504 504 HOH HOH . 
E 5 HOH A 155 505 505 HOH HOH . 
E 5 HOH A 156 506 506 HOH HOH . 
E 5 HOH A 157 507 507 HOH HOH . 
E 5 HOH A 158 508 508 HOH HOH . 
E 5 HOH A 159 509 509 HOH HOH . 
E 5 HOH A 160 510 510 HOH HOH . 
E 5 HOH A 161 511 511 HOH HOH . 
E 5 HOH A 162 512 512 HOH HOH . 
E 5 HOH A 163 513 513 HOH HOH . 
E 5 HOH A 164 514 514 HOH HOH . 
E 5 HOH A 165 515 515 HOH HOH . 
E 5 HOH A 166 516 516 HOH HOH . 
E 5 HOH A 167 517 517 HOH HOH . 
E 5 HOH A 168 518 518 HOH HOH . 
E 5 HOH A 169 519 519 HOH HOH . 
E 5 HOH A 170 520 520 HOH HOH . 
E 5 HOH A 171 521 521 HOH HOH . 
E 5 HOH A 172 522 522 HOH HOH . 
E 5 HOH A 173 523 523 HOH HOH . 
E 5 HOH A 174 524 524 HOH HOH . 
E 5 HOH A 175 525 525 HOH HOH . 
E 5 HOH A 176 526 526 HOH HOH . 
E 5 HOH A 177 527 527 HOH HOH . 
E 5 HOH A 178 528 528 HOH HOH . 
E 5 HOH A 179 529 529 HOH HOH . 
E 5 HOH A 180 530 530 HOH HOH . 
E 5 HOH A 181 531 531 HOH HOH . 
E 5 HOH A 182 532 532 HOH HOH . 
E 5 HOH A 183 533 533 HOH HOH . 
E 5 HOH A 184 534 534 HOH HOH . 
E 5 HOH A 185 535 535 HOH HOH . 
E 5 HOH A 186 536 536 HOH HOH . 
E 5 HOH A 187 537 537 HOH HOH . 
E 5 HOH A 188 538 538 HOH HOH . 
E 5 HOH A 189 539 539 HOH HOH . 
E 5 HOH A 190 540 540 HOH HOH . 
E 5 HOH A 191 541 541 HOH HOH . 
E 5 HOH A 192 542 542 HOH HOH . 
E 5 HOH A 193 543 543 HOH HOH . 
E 5 HOH A 194 544 544 HOH HOH . 
E 5 HOH A 195 545 545 HOH HOH . 
E 5 HOH A 196 546 546 HOH HOH . 
E 5 HOH A 197 547 547 HOH HOH . 
E 5 HOH A 198 548 548 HOH HOH . 
E 5 HOH A 199 550 550 HOH HOH . 
E 5 HOH A 200 551 551 HOH HOH . 
E 5 HOH A 201 552 552 HOH HOH . 
E 5 HOH A 202 553 553 HOH HOH . 
E 5 HOH A 203 554 554 HOH HOH . 
E 5 HOH A 204 555 555 HOH HOH . 
E 5 HOH A 205 556 556 HOH HOH . 
E 5 HOH A 206 557 557 HOH HOH . 
E 5 HOH A 207 559 559 HOH HOH . 
E 5 HOH A 208 560 560 HOH HOH . 
E 5 HOH A 209 561 561 HOH HOH . 
E 5 HOH A 210 562 562 HOH HOH . 
E 5 HOH A 211 563 563 HOH HOH . 
E 5 HOH A 212 564 564 HOH HOH . 
E 5 HOH A 213 565 565 HOH HOH . 
E 5 HOH A 214 566 566 HOH HOH . 
E 5 HOH A 215 567 567 HOH HOH . 
E 5 HOH A 216 568 568 HOH HOH . 
E 5 HOH A 217 569 569 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -8.209 
_atom_site.Cartn_y               18.054 
_atom_site.Cartn_z               -25.512 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        11.18 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           347 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#