data_3L6I # _model_server_result.job_id bbIyqsboBsxmXs9THj22sg _model_server_result.datetime_utc '2025-03-31 22:10:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3L6I # _exptl.entry_id 3L6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L6I _cell.length_a 109.05 _cell.length_b 174.55 _cell.length_c 43.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 A,C,E 3 1 B,D,F 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_545 x+1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 54.525 -87.275 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 5 A HIS 10 1_555 A N MSE 6 A MSE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C MSE 6 A MSE 11 1_555 A N ASN 7 A ASN 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ASP 69 A ASP 74 1_555 A N MSE 70 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 70 A MSE 75 1_555 A N ASN 71 A ASN 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C THR 80 A THR 85 1_555 A N MSE 81 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C MSE 81 A MSE 86 1_555 A N LYS 82 A LYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C GLU 102 A GLU 107 1_555 A N MSE 103 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 103 A MSE 108 1_555 A N GLU 104 A GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C LYS 114 A LYS 119 1_555 A N MSE 115 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 115 A MSE 120 1_555 A N GLN 116 A GLN 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C VAL 118 A VAL 123 1_555 A N MSE 119 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 119 A MSE 124 1_555 A N GLN 120 A GLN 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 A C ALA 151 A ALA 156 1_555 A N MSE 152 A MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 A C MSE 152 A MSE 157 1_555 A N ALA 153 A ALA 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 B C HIS 5 B HIS 10 1_555 B N MSE 6 B MSE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 B C MSE 6 B MSE 11 1_555 B N ASN 7 B ASN 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 B C ASP 69 B ASP 74 1_555 B N MSE 70 B MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 B C MSE 70 B MSE 75 1_555 B N ASN 71 B ASN 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 B C THR 80 B THR 85 1_555 B N MSE 81 B MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale20 B C MSE 81 B MSE 86 1_555 B N LYS 82 B LYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 B C GLU 102 B GLU 107 1_555 B N MSE 103 B MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 B C MSE 103 B MSE 108 1_555 B N GLU 104 B GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale23 B C LYS 114 B LYS 119 1_555 B N MSE 115 B MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 B C MSE 115 B MSE 120 1_555 B N GLN 116 B GLN 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale25 B C VAL 118 B VAL 123 1_555 B N MSE 119 B MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale26 B C MSE 119 B MSE 124 1_555 B N GLN 120 B GLN 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 B C ALA 151 B ALA 156 1_555 B N MSE 152 B MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale28 B C MSE 152 B MSE 157 1_555 B N ALA 153 B ALA 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3L6I _atom_sites.fract_transf_matrix[1][1] 0.00917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 1 1 NA NA . D 2 NA B 1 2 2 NA NA . E 3 HOH A 1 2 2 HOH HOH . E 3 HOH A 2 3 3 HOH HOH . E 3 HOH A 3 4 4 HOH HOH . E 3 HOH A 4 5 5 HOH HOH . E 3 HOH A 5 187 187 HOH HOH . E 3 HOH A 6 188 188 HOH HOH . E 3 HOH A 7 189 189 HOH HOH . E 3 HOH A 8 190 190 HOH HOH . E 3 HOH A 9 191 191 HOH HOH . E 3 HOH A 10 192 192 HOH HOH . E 3 HOH A 11 193 193 HOH HOH . E 3 HOH A 12 194 194 HOH HOH . E 3 HOH A 13 195 195 HOH HOH . E 3 HOH A 14 196 196 HOH HOH . E 3 HOH A 15 197 197 HOH HOH . E 3 HOH A 16 198 198 HOH HOH . E 3 HOH A 17 199 199 HOH HOH . E 3 HOH A 18 200 200 HOH HOH . E 3 HOH A 19 201 201 HOH HOH . E 3 HOH A 20 202 202 HOH HOH . E 3 HOH A 21 203 203 HOH HOH . E 3 HOH A 22 204 204 HOH HOH . E 3 HOH A 23 205 205 HOH HOH . E 3 HOH A 24 206 206 HOH HOH . E 3 HOH A 25 207 207 HOH HOH . E 3 HOH A 26 208 208 HOH HOH . E 3 HOH A 27 209 209 HOH HOH . E 3 HOH A 28 210 210 HOH HOH . E 3 HOH A 29 211 211 HOH HOH . E 3 HOH A 30 212 212 HOH HOH . E 3 HOH A 31 213 213 HOH HOH . E 3 HOH A 32 214 214 HOH HOH . E 3 HOH A 33 215 215 HOH HOH . E 3 HOH A 34 216 216 HOH HOH . E 3 HOH A 35 217 217 HOH HOH . E 3 HOH A 36 218 218 HOH HOH . E 3 HOH A 37 219 219 HOH HOH . E 3 HOH A 38 220 220 HOH HOH . E 3 HOH A 39 221 221 HOH HOH . E 3 HOH A 40 222 222 HOH HOH . E 3 HOH A 41 223 223 HOH HOH . E 3 HOH A 42 224 224 HOH HOH . E 3 HOH A 43 225 225 HOH HOH . E 3 HOH A 44 226 226 HOH HOH . E 3 HOH A 45 227 227 HOH HOH . E 3 HOH A 46 228 228 HOH HOH . E 3 HOH A 47 229 229 HOH HOH . E 3 HOH A 48 230 230 HOH HOH . E 3 HOH A 49 231 231 HOH HOH . E 3 HOH A 50 232 232 HOH HOH . E 3 HOH A 51 233 233 HOH HOH . E 3 HOH A 52 234 234 HOH HOH . E 3 HOH A 53 235 235 HOH HOH . E 3 HOH A 54 236 236 HOH HOH . E 3 HOH A 55 237 237 HOH HOH . E 3 HOH A 56 238 238 HOH HOH . E 3 HOH A 57 239 239 HOH HOH . E 3 HOH A 58 240 240 HOH HOH . E 3 HOH A 59 241 241 HOH HOH . E 3 HOH A 60 242 242 HOH HOH . E 3 HOH A 61 244 244 HOH HOH . E 3 HOH A 62 245 245 HOH HOH . E 3 HOH A 63 246 246 HOH HOH . E 3 HOH A 64 247 247 HOH HOH . E 3 HOH A 65 248 248 HOH HOH . E 3 HOH A 66 249 249 HOH HOH . E 3 HOH A 67 250 250 HOH HOH . E 3 HOH A 68 251 251 HOH HOH . E 3 HOH A 69 252 252 HOH HOH . E 3 HOH A 70 253 253 HOH HOH . E 3 HOH A 71 254 254 HOH HOH . F 3 HOH B 1 4 4 HOH HOH . F 3 HOH B 2 187 187 HOH HOH . F 3 HOH B 3 188 188 HOH HOH . F 3 HOH B 4 189 189 HOH HOH . F 3 HOH B 5 190 190 HOH HOH . F 3 HOH B 6 191 191 HOH HOH . F 3 HOH B 7 192 192 HOH HOH . F 3 HOH B 8 193 193 HOH HOH . F 3 HOH B 9 195 195 HOH HOH . F 3 HOH B 10 196 196 HOH HOH . F 3 HOH B 11 197 197 HOH HOH . F 3 HOH B 12 198 198 HOH HOH . F 3 HOH B 13 199 199 HOH HOH . F 3 HOH B 14 200 200 HOH HOH . F 3 HOH B 15 201 201 HOH HOH . F 3 HOH B 16 202 202 HOH HOH . F 3 HOH B 17 203 203 HOH HOH . F 3 HOH B 18 204 204 HOH HOH . F 3 HOH B 19 205 205 HOH HOH . F 3 HOH B 20 206 206 HOH HOH . F 3 HOH B 21 207 207 HOH HOH . F 3 HOH B 22 208 208 HOH HOH . F 3 HOH B 23 209 209 HOH HOH . F 3 HOH B 24 210 210 HOH HOH . F 3 HOH B 25 211 211 HOH HOH . F 3 HOH B 26 213 213 HOH HOH . F 3 HOH B 27 214 214 HOH HOH . F 3 HOH B 28 215 215 HOH HOH . F 3 HOH B 29 216 216 HOH HOH . F 3 HOH B 30 217 217 HOH HOH . F 3 HOH B 31 218 218 HOH HOH . F 3 HOH B 32 219 219 HOH HOH . F 3 HOH B 33 220 220 HOH HOH . F 3 HOH B 34 221 221 HOH HOH . F 3 HOH B 35 222 222 HOH HOH . F 3 HOH B 36 223 223 HOH HOH . F 3 HOH B 37 224 224 HOH HOH . F 3 HOH B 38 225 225 HOH HOH . F 3 HOH B 39 226 226 HOH HOH . F 3 HOH B 40 227 227 HOH HOH . F 3 HOH B 41 228 228 HOH HOH . F 3 HOH B 42 229 229 HOH HOH . F 3 HOH B 43 230 230 HOH HOH . F 3 HOH B 44 231 231 HOH HOH . F 3 HOH B 45 232 232 HOH HOH . F 3 HOH B 46 233 233 HOH HOH . F 3 HOH B 47 234 234 HOH HOH . F 3 HOH B 48 235 235 HOH HOH . F 3 HOH B 49 236 236 HOH HOH . F 3 HOH B 50 237 237 HOH HOH . F 3 HOH B 51 239 239 HOH HOH . F 3 HOH B 52 240 240 HOH HOH . F 3 HOH B 53 241 241 HOH HOH . F 3 HOH B 54 242 242 HOH HOH . F 3 HOH B 55 243 243 HOH HOH . F 3 HOH B 56 244 244 HOH HOH . F 3 HOH B 57 245 245 HOH HOH . F 3 HOH B 58 246 246 HOH HOH . F 3 HOH B 59 247 247 HOH HOH . F 3 HOH B 60 248 248 HOH HOH . F 3 HOH B 61 249 249 HOH HOH . F 3 HOH B 62 250 250 HOH HOH . F 3 HOH B 63 251 251 HOH HOH . F 3 HOH B 64 252 252 HOH HOH . F 3 HOH B 65 253 253 HOH HOH . F 3 HOH B 66 254 254 HOH HOH . F 3 HOH B 67 255 255 HOH HOH . F 3 HOH B 68 256 256 HOH HOH . F 3 HOH B 69 257 257 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 0 _atom_site.Cartn_y 113.754 _atom_site.Cartn_z 21.9 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 20.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 2 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 603 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #