data_3L70
#
_model_server_result.job_id            o4mUtCGtjAgenBV3gPXg0A 
_model_server_result.datetime_utc      '2024-11-27 17:42:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l70 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":2091}' 
#
_entry.id    3L70 
#
_exptl.entry_id    3L70 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          18 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3L70 
_cell.length_a            169.614 
_cell.length_b            181.993 
_cell.length_c            240.54 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L70 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 18 EA N N 
? 18 FA N N 
? 18 LA N N 
? 18 TA N N 
? 18 UA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc16 N SD MET 160 Q MET 160 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3L70 
_atom_sites.fract_transf_matrix[1][1]    0.005896 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004157 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 PEE A 1 2008 2008 PEE PEE . 
V 12 HEM C 1 501 501 HEM HEM . 
W 12 HEM C 1 502 502 HEM HEM . 
X 13 JZV C 1 2001 2001 JZV JZV . 
Y 14 UQ C 1 2002 2002 UQ UQ . 
Z 15 CDL C 1 2004 2004 CDL CDL . 
AA 11 PEE C 1 2007 2007 PEE PEE . 
BA 16 GOL C 1 2011 2011 GOL GOL . 
CA 17 HEC D 1 501 501 HEC HEC . 
DA 15 CDL D 1 2003 2003 CDL CDL . 
EA 18 BOG D 1 2009 2009 BOG BOG . 
FA 18 BOG D 1 2091 2091 BOG BOG . 
GA 19 FES E 1 501 501 FES FES . 
HA 11 PEE E 1 2005 2005 PEE PEE . 
IA 11 PEE N 1 3008 3008 PEE PEE . 
JA 12 HEM P 1 501 501 HEM HEM . 
KA 12 HEM P 1 502 502 HEM HEM . 
LA 18 BOG P 1 2010 2010 BOG BOG . 
MA 13 JZV P 1 3001 3001 JZV JZV . 
NA 14 UQ P 1 3002 3002 UQ UQ . 
OA 15 CDL P 1 3004 3004 CDL CDL . 
PA 11 PEE P 1 3007 3007 PEE PEE . 
QA 16 GOL P 1 3011 3011 GOL GOL . 
RA 17 HEC Q 1 501 501 HEC HEC . 
SA 15 CDL Q 1 3003 3003 CDL CDL . 
TA 18 BOG Q 1 3009 3009 BOG BOG . 
UA 18 BOG Q 1 3091 3091 BOG BOG . 
VA 19 FES R 1 501 501 FES FES . 
WA 11 PEE R 1 3005 3005 PEE PEE . 
XA 20 HOH C 1 381 2 HOH HOH . 
XA 20 HOH C 2 382 4 HOH HOH . 
XA 20 HOH C 3 383 108 HOH HOH . 
XA 20 HOH C 4 384 119 HOH HOH . 
XA 20 HOH C 5 385 168 HOH HOH . 
XA 20 HOH C 6 386 222 HOH HOH . 
XA 20 HOH C 7 1008 1008 HOH HOH . 
XA 20 HOH C 8 1238 1238 HOH HOH . 
YA 20 HOH E 1 1289 1289 HOH HOH . 
ZA 20 HOH P 1 381 1 HOH HOH . 
ZA 20 HOH P 2 382 5 HOH HOH . 
ZA 20 HOH P 3 383 6 HOH HOH . 
ZA 20 HOH P 4 384 28 HOH HOH . 
ZA 20 HOH P 5 385 35 HOH HOH . 
ZA 20 HOH P 6 386 109 HOH HOH . 
ZA 20 HOH P 7 387 214 HOH HOH . 
ZA 20 HOH P 8 959 959 HOH HOH . 
ZA 20 HOH P 9 1239 1239 HOH HOH . 
AB 20 HOH R 1 1230 1230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . FA 18 29.669 148.167 56.865 1 201.56 ? C1 BOG 2091 D 1 
HETATM 2 O O1 BOG . . . FA 18 29.587 149.513 57.237 1 201.17 ? O1 BOG 2091 D 1 
HETATM 3 C C2 BOG . . . FA 18 28.99 147.925 55.464 1 201.49 ? C2 BOG 2091 D 1 
HETATM 4 O O2 BOG . . . FA 18 27.606 148.292 55.48 1 201.41 ? O2 BOG 2091 D 1 
HETATM 5 C C3 BOG . . . FA 18 29.129 146.444 55.077 1 201.27 ? C3 BOG 2091 D 1 
HETATM 6 O O3 BOG . . . FA 18 28.522 146.215 53.816 1 200.68 ? O3 BOG 2091 D 1 
HETATM 7 C C4 BOG . . . FA 18 30.642 146.07 55.052 1 201.27 ? C4 BOG 2091 D 1 
HETATM 8 O O4 BOG . . . FA 18 30.817 144.692 54.686 1 201.2 ? O4 BOG 2091 D 1 
HETATM 9 C C5 BOG . . . FA 18 31.28 146.349 56.466 1 201.22 ? C5 BOG 2091 D 1 
HETATM 10 O O5 BOG . . . FA 18 31.086 147.765 56.852 1 201.58 ? O5 BOG 2091 D 1 
HETATM 11 C C6 BOG . . . FA 18 32.792 146.043 56.515 1 200.74 ? C6 BOG 2091 D 1 
HETATM 12 O O6 BOG . . . FA 18 33.268 145.869 57.849 1 200 ? O6 BOG 2091 D 1 
HETATM 13 C C1' BOG . . . FA 18 29.229 149.829 58.6 1 200.76 ? C1' BOG 2091 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#