data_3L70
#
_model_server_result.job_id            rj9gtIMCsnfbkrYorTznhw 
_model_server_result.datetime_utc      '2024-10-14 07:31:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l70 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"IA","auth_seq_id":3008}' 
#
_entry.id    3L70 
#
_exptl.entry_id    3L70 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3L70 
_cell.length_a            169.614 
_cell.length_b            181.993 
_cell.length_c            240.54 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L70 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 U N N 
? 11 AA N N 
? 11 HA N N 
? 11 IA N N 
? 11 PA N N 
? 11 WA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc16 N SD MET 160 Q MET 160 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 PEE sing 772 n n 
C5 C4 PEE sing 773 n n 
C4 O4P PEE sing 774 n n 
O4P P PEE sing 775 n n 
O1P P PEE doub 776 n n 
C1 O3P PEE sing 777 n n 
C1 C2 PEE sing 778 n n 
O3P P PEE sing 779 n n 
P O2P PEE sing 780 n n 
C2 C3 PEE sing 781 n n 
C2 O2 PEE sing 782 n n 
C3 O3 PEE sing 783 n n 
O2 C10 PEE sing 784 n n 
C31 C30 PEE sing 785 n n 
C31 C32 PEE sing 786 n n 
C33 C32 PEE sing 787 n n 
C33 C34 PEE sing 788 n n 
C30 O3 PEE sing 789 n n 
C30 O5 PEE doub 790 n n 
C10 O4 PEE doub 791 n n 
C10 C11 PEE sing 792 n n 
C34 C35 PEE sing 793 n n 
C11 C12 PEE sing 794 n n 
C35 C36 PEE sing 795 n n 
C36 C37 PEE sing 796 n n 
C37 C38 PEE sing 797 n n 
C38 C39 PEE doub 798 z n 
C12 C13 PEE sing 799 n n 
C39 C40 PEE sing 800 n n 
C13 C14 PEE sing 801 n n 
C14 C15 PEE sing 802 n n 
C40 C41 PEE sing 803 n n 
C15 C16 PEE sing 804 n n 
C41 C42 PEE sing 805 n n 
C16 C17 PEE sing 806 n n 
C42 C43 PEE sing 807 n n 
C17 C18 PEE sing 808 n n 
C43 C44 PEE sing 809 n n 
C18 C19 PEE doub 810 z n 
C46 C47 PEE sing 811 n n 
C46 C45 PEE sing 812 n n 
C44 C45 PEE sing 813 n n 
C19 C20 PEE sing 814 n n 
C20 C21 PEE sing 815 n n 
C21 C22 PEE sing 816 n n 
C22 C23 PEE sing 817 n n 
C23 C24 PEE sing 818 n n 
C24 C25 PEE sing 819 n n 
C26 C25 PEE sing 820 n n 
C26 C27 PEE sing 821 n n 
C27 H7 PEE sing 822 n n 
C27 H8 PEE sing 823 n n 
C27 H82 PEE sing 824 n n 
C26 H5 PEE sing 825 n n 
C26 H6 PEE sing 826 n n 
C25 H12 PEE sing 827 n n 
C25 H4 PEE sing 828 n n 
C24 H10 PEE sing 829 n n 
C24 H11 PEE sing 830 n n 
C23 H83 PEE sing 831 n n 
C23 H9 PEE sing 832 n n 
C22 H2 PEE sing 833 n n 
C22 H3 PEE sing 834 n n 
C21 H14 PEE sing 835 n n 
C21 H1 PEE sing 836 n n 
C20 H16 PEE sing 837 n n 
C20 H13 PEE sing 838 n n 
C19 H18 PEE sing 839 n n 
C18 H20 PEE sing 840 n n 
C17 H22 PEE sing 841 n n 
C17 H19 PEE sing 842 n n 
C16 H21 PEE sing 843 n n 
C16 H28 PEE sing 844 n n 
C15 H23 PEE sing 845 n n 
C15 H24 PEE sing 846 n n 
C14 H25 PEE sing 847 n n 
C14 H26 PEE sing 848 n n 
C13 H17 PEE sing 849 n n 
C13 H27 PEE sing 850 n n 
C12 H15 PEE sing 851 n n 
C12 H29 PEE sing 852 n n 
C11 H30 PEE sing 853 n n 
C11 H31 PEE sing 854 n n 
C2 H32 PEE sing 855 n n 
C1 H33 PEE sing 856 n n 
C1 H34 PEE sing 857 n n 
O2P H35 PEE sing 858 n n 
C4 H36 PEE sing 859 n n 
C4 H37 PEE sing 860 n n 
C5 H38 PEE sing 861 n n 
C5 H39 PEE sing 862 n n 
N H40 PEE sing 863 n n 
N H41 PEE sing 864 n n 
C3 H43 PEE sing 865 n n 
C3 H44 PEE sing 866 n n 
C31 H45 PEE sing 867 n n 
C31 H46 PEE sing 868 n n 
C32 H47 PEE sing 869 n n 
C32 H48 PEE sing 870 n n 
C33 H49 PEE sing 871 n n 
C33 H50 PEE sing 872 n n 
C34 H51 PEE sing 873 n n 
C34 H52 PEE sing 874 n n 
C35 H53 PEE sing 875 n n 
C35 H54 PEE sing 876 n n 
C36 H55 PEE sing 877 n n 
C36 H56 PEE sing 878 n n 
C37 H57 PEE sing 879 n n 
C37 H58 PEE sing 880 n n 
C38 H59 PEE sing 881 n n 
C39 H60 PEE sing 882 n n 
C40 H81 PEE sing 883 n n 
C40 H61 PEE sing 884 n n 
C41 H80 PEE sing 885 n n 
C41 H62 PEE sing 886 n n 
C42 H63 PEE sing 887 n n 
C42 H64 PEE sing 888 n n 
C43 H65 PEE sing 889 n n 
C43 H66 PEE sing 890 n n 
C44 H67 PEE sing 891 n n 
C44 H68 PEE sing 892 n n 
C45 H69 PEE sing 893 n n 
C45 H70 PEE sing 894 n n 
C46 H71 PEE sing 895 n n 
C46 H72 PEE sing 896 n n 
C47 H73 PEE sing 897 n n 
C47 H74 PEE sing 898 n n 
C47 H75 PEE sing 899 n n 
#
_atom_sites.entry_id                     3L70 
_atom_sites.fract_transf_matrix[1][1]    0.005896 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004157 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 PEE A 1 2008 2008 PEE PEE . 
V 12 HEM C 1 501 501 HEM HEM . 
W 12 HEM C 1 502 502 HEM HEM . 
X 13 JZV C 1 2001 2001 JZV JZV . 
Y 14 UQ C 1 2002 2002 UQ UQ . 
Z 15 CDL C 1 2004 2004 CDL CDL . 
AA 11 PEE C 1 2007 2007 PEE PEE . 
BA 16 GOL C 1 2011 2011 GOL GOL . 
CA 17 HEC D 1 501 501 HEC HEC . 
DA 15 CDL D 1 2003 2003 CDL CDL . 
EA 18 BOG D 1 2009 2009 BOG BOG . 
FA 18 BOG D 1 2091 2091 BOG BOG . 
GA 19 FES E 1 501 501 FES FES . 
HA 11 PEE E 1 2005 2005 PEE PEE . 
IA 11 PEE N 1 3008 3008 PEE PEE . 
JA 12 HEM P 1 501 501 HEM HEM . 
KA 12 HEM P 1 502 502 HEM HEM . 
LA 18 BOG P 1 2010 2010 BOG BOG . 
MA 13 JZV P 1 3001 3001 JZV JZV . 
NA 14 UQ P 1 3002 3002 UQ UQ . 
OA 15 CDL P 1 3004 3004 CDL CDL . 
PA 11 PEE P 1 3007 3007 PEE PEE . 
QA 16 GOL P 1 3011 3011 GOL GOL . 
RA 17 HEC Q 1 501 501 HEC HEC . 
SA 15 CDL Q 1 3003 3003 CDL CDL . 
TA 18 BOG Q 1 3009 3009 BOG BOG . 
UA 18 BOG Q 1 3091 3091 BOG BOG . 
VA 19 FES R 1 501 501 FES FES . 
WA 11 PEE R 1 3005 3005 PEE PEE . 
XA 20 HOH C 1 381 2 HOH HOH . 
XA 20 HOH C 2 382 4 HOH HOH . 
XA 20 HOH C 3 383 108 HOH HOH . 
XA 20 HOH C 4 384 119 HOH HOH . 
XA 20 HOH C 5 385 168 HOH HOH . 
XA 20 HOH C 6 386 222 HOH HOH . 
XA 20 HOH C 7 1008 1008 HOH HOH . 
XA 20 HOH C 8 1238 1238 HOH HOH . 
YA 20 HOH E 1 1289 1289 HOH HOH . 
ZA 20 HOH P 1 381 1 HOH HOH . 
ZA 20 HOH P 2 382 5 HOH HOH . 
ZA 20 HOH P 3 383 6 HOH HOH . 
ZA 20 HOH P 4 384 28 HOH HOH . 
ZA 20 HOH P 5 385 35 HOH HOH . 
ZA 20 HOH P 6 386 109 HOH HOH . 
ZA 20 HOH P 7 387 214 HOH HOH . 
ZA 20 HOH P 8 959 959 HOH HOH . 
ZA 20 HOH P 9 1239 1239 HOH HOH . 
AB 20 HOH R 1 1230 1230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P PEE . . . IA 11 30.91 108.726 109.959 1 111.74 ? O3P PEE 3008 N 1 
HETATM 2 P P PEE . . . IA 11 31.43 107.369 110.712 1 112.13 ? P PEE 3008 N 1 
HETATM 3 O O2P PEE . . . IA 11 30.626 107.2 112.104 1 111.39 ? O2P PEE 3008 N 1 
HETATM 4 O O1P PEE . . . IA 11 33.013 107.53 111.011 1 112.54 ? O1P PEE 3008 N 1 
HETATM 5 O O4P PEE . . . IA 11 31.208 106.042 109.765 1 110.84 ? O4P PEE 3008 N 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#