data_3L71 # _model_server_result.job_id '_J9ugdEaayqj17wUTIYYDg' _model_server_result.datetime_utc '2024-11-06 03:13:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":2001}' # _entry.id 3L71 # _exptl.entry_id 3L71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.387 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL (2Z)-2-(2-{[6-(2-CYANOPHENOXY)PYRIMIDIN-4-YL]OXY}PHENYL)-3-METHOXYACRYLATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L71 _cell.length_a 170.149 _cell.length_b 181.312 _cell.length_c 240.501 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 Y N N ? 13 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C22 H17 N3 O5' _chem_comp.formula_weight 403.387 _chem_comp.id AZO _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL (2Z)-2-(2-{[6-(2-CYANOPHENOXY)PYRIMIDIN-4-YL]OXY}PHENYL)-3-METHOXYACRYLATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms AZOXYSTROBIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 AZO trip 70 n n C1 C2 AZO sing 71 n n C2 C3 AZO doub 72 n y C2 C7 AZO sing 73 n y C3 C4 AZO sing 74 n y C3 H3 AZO sing 75 n n C4 C5 AZO doub 76 n y C4 H4 AZO sing 77 n n C5 C6 AZO sing 78 n y C5 H5 AZO sing 79 n n C6 C7 AZO doub 80 n y C6 H6 AZO sing 81 n n C7 O1 AZO sing 82 n n O1 C8 AZO sing 83 n n C8 C9 AZO doub 84 n y C8 N2 AZO sing 85 n y C9 C10 AZO sing 86 n y C9 H9 AZO sing 87 n n C10 N3 AZO doub 88 n y C10 O2 AZO sing 89 n n N3 C11 AZO sing 90 n y C11 N2 AZO doub 91 n y C11 H11 AZO sing 92 n n O2 C12 AZO sing 93 n n C12 C13 AZO doub 94 n y C12 C17 AZO sing 95 n y C13 C14 AZO sing 96 n y C13 H13 AZO sing 97 n n C14 C15 AZO doub 98 n y C14 H14 AZO sing 99 n n C15 C16 AZO sing 100 n y C15 H15 AZO sing 101 n n C16 C17 AZO doub 102 n y C16 H16 AZO sing 103 n n C17 C18 AZO sing 104 n n C18 C19 AZO sing 105 n n C18 C21 AZO doub 106 e n C19 O3 AZO doub 107 n n C19 O4 AZO sing 108 n n O4 C20 AZO sing 109 n n C20 H201 AZO sing 110 n n C20 H202 AZO sing 111 n n C20 H203 AZO sing 112 n n C21 O5 AZO sing 113 n n C21 H21 AZO sing 114 n n O5 C22 AZO sing 115 n n C22 H221 AZO sing 116 n n C22 H222 AZO sing 117 n n C22 H223 AZO sing 118 n n # _atom_sites.entry_id 3L71 _atom_sites.fract_transf_matrix[1][1] 0.005877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2005 2005 PEE PEE . V 11 PEE A 1 2008 2008 PEE PEE . W 12 HEM C 1 501 501 HEM HEM . X 12 HEM C 1 502 502 HEM HEM . Y 13 AZO C 1 2001 2001 AZO AZO . Z 14 UQ C 1 2002 2002 UQ UQ . AA 11 PEE C 1 2007 2007 PEE PEE . BA 15 GOL C 1 2011 2011 GOL GOL . CA 16 HEC D 1 501 501 HEC HEC . DA 17 CDL D 1 2003 2003 CDL CDL . EA 18 BOG D 1 2009 2009 BOG BOG . FA 18 BOG D 1 2091 2091 BOG BOG . GA 19 FES E 1 501 501 FES FES . HA 17 CDL G 1 2004 2004 CDL CDL . IA 11 PEE N 1 3008 3008 PEE PEE . JA 12 HEM P 1 501 501 HEM HEM . KA 12 HEM P 1 502 502 HEM HEM . LA 18 BOG P 1 2010 2010 BOG BOG . MA 13 AZO P 1 3001 3001 AZO AZO . NA 14 UQ P 1 3002 3002 UQ UQ . OA 11 PEE P 1 3005 3005 PEE PEE . PA 11 PEE P 1 3007 3007 PEE PEE . QA 15 GOL P 1 3011 3011 GOL GOL . RA 16 HEC Q 1 501 501 HEC HEC . SA 17 CDL Q 1 3003 3003 CDL CDL . TA 18 BOG Q 1 3009 3009 BOG BOG . UA 18 BOG Q 1 3091 3091 BOG BOG . VA 19 FES R 1 501 501 FES FES . WA 17 CDL T 1 3004 3004 CDL CDL . XA 20 HOH C 1 381 2 HOH HOH . XA 20 HOH C 2 382 4 HOH HOH . XA 20 HOH C 3 383 108 HOH HOH . XA 20 HOH C 4 384 119 HOH HOH . XA 20 HOH C 5 385 168 HOH HOH . XA 20 HOH C 6 386 222 HOH HOH . XA 20 HOH C 7 1008 1008 HOH HOH . XA 20 HOH C 8 1238 1238 HOH HOH . YA 20 HOH E 1 1289 1289 HOH HOH . ZA 20 HOH P 1 381 1 HOH HOH . ZA 20 HOH P 2 382 5 HOH HOH . ZA 20 HOH P 3 383 6 HOH HOH . ZA 20 HOH P 4 384 28 HOH HOH . ZA 20 HOH P 5 385 35 HOH HOH . ZA 20 HOH P 6 386 109 HOH HOH . ZA 20 HOH P 7 387 214 HOH HOH . ZA 20 HOH P 8 959 959 HOH HOH . ZA 20 HOH P 9 1239 1239 HOH HOH . AB 20 HOH R 1 1230 1230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AZO . . . Y 13 7.565 127.963 86.716 0.96 39.84 ? N1 AZO 2001 C 1 HETATM 2 C C1 AZO . . . Y 13 7.702 127.224 85.853 0.96 39.35 ? C1 AZO 2001 C 1 HETATM 3 C C2 AZO . . . Y 13 7.838 126.331 84.742 0.96 38.18 ? C2 AZO 2001 C 1 HETATM 4 C C3 AZO . . . Y 13 7.544 124.95 84.896 0.96 38.31 ? C3 AZO 2001 C 1 HETATM 5 C C4 AZO . . . Y 13 7.688 124.074 83.759 0.96 41.35 ? C4 AZO 2001 C 1 HETATM 6 C C5 AZO . . . Y 13 8.122 124.553 82.473 0.96 39.28 ? C5 AZO 2001 C 1 HETATM 7 C C6 AZO . . . Y 13 8.429 125.93 82.28 0.96 39.17 ? C6 AZO 2001 C 1 HETATM 8 C C7 AZO . . . Y 13 8.298 126.849 83.391 0.96 37.18 ? C7 AZO 2001 C 1 HETATM 9 O O1 AZO . . . Y 13 8.59 128.191 83.265 0.96 37.99 ? O1 AZO 2001 C 1 HETATM 10 C C8 AZO . . . Y 13 7.968 129.05 82.411 0.96 37.65 ? C8 AZO 2001 C 1 HETATM 11 C C9 AZO . . . Y 13 8.399 130.379 82.412 0.96 36.57 ? C9 AZO 2001 C 1 HETATM 12 C C10 AZO . . . Y 13 7.752 131.259 81.538 0.96 38.84 ? C10 AZO 2001 C 1 HETATM 13 N N3 AZO . . . Y 13 6.741 130.797 80.727 0.96 40.17 ? N3 AZO 2001 C 1 HETATM 14 C C11 AZO . . . Y 13 6.339 129.498 80.74 0.96 40.56 ? C11 AZO 2001 C 1 HETATM 15 N N2 AZO . . . Y 13 6.955 128.643 81.579 0.96 38.87 ? N2 AZO 2001 C 1 HETATM 16 O O2 AZO . . . Y 13 8.159 132.575 81.537 0.96 40.47 ? O2 AZO 2001 C 1 HETATM 17 C C12 AZO . . . Y 13 7.613 133.573 80.762 0.96 40.17 ? C12 AZO 2001 C 1 HETATM 18 C C13 AZO . . . Y 13 6.19 133.848 80.776 0.96 39.22 ? C13 AZO 2001 C 1 HETATM 19 C C14 AZO . . . Y 13 5.654 134.883 79.981 0.96 38.63 ? C14 AZO 2001 C 1 HETATM 20 C C15 AZO . . . Y 13 6.508 135.673 79.157 0.96 39.91 ? C15 AZO 2001 C 1 HETATM 21 C C16 AZO . . . Y 13 7.921 135.441 79.107 0.96 40.94 ? C16 AZO 2001 C 1 HETATM 22 C C17 AZO . . . Y 13 8.508 134.404 79.89 0.96 40.36 ? C17 AZO 2001 C 1 HETATM 23 C C18 AZO . . . Y 13 9.997 134.154 79.837 0.96 41.28 ? C18 AZO 2001 C 1 HETATM 24 C C19 AZO . . . Y 13 10.529 133.39 78.893 0.96 41.1 ? C19 AZO 2001 C 1 HETATM 25 O O3 AZO . . . Y 13 9.816 132.865 78.026 0.96 41.22 ? O3 AZO 2001 C 1 HETATM 26 O O4 AZO . . . Y 13 11.972 133.166 78.874 0.96 39.13 ? O4 AZO 2001 C 1 HETATM 27 C C20 AZO . . . Y 13 12.559 132.346 77.863 0.96 38.32 ? C20 AZO 2001 C 1 HETATM 28 C C21 AZO . . . Y 13 10.916 134.772 80.851 0.96 41.18 ? C21 AZO 2001 C 1 HETATM 29 O O5 AZO . . . Y 13 10.263 135.556 81.784 0.96 41.67 ? O5 AZO 2001 C 1 HETATM 30 C C22 AZO . . . Y 13 11.22 136.099 82.648 0.96 41.3 ? C22 AZO 2001 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #