data_3L71 # _model_server_result.job_id yVbNdw_2liuDWyGLU_itlQ _model_server_result.datetime_utc '2024-11-06 03:11:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":2008}' # _entry.id 3L71 # _exptl.entry_id 3L71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 744.034 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L71 _cell.length_a 170.149 _cell.length_b 181.312 _cell.length_c 240.501 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 AA N N ? 11 IA N N ? 11 OA N N ? 11 PA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 772 n n C5 C4 PEE sing 773 n n C4 O4P PEE sing 774 n n O4P P PEE sing 775 n n O1P P PEE doub 776 n n C1 O3P PEE sing 777 n n C1 C2 PEE sing 778 n n O3P P PEE sing 779 n n P O2P PEE sing 780 n n C2 C3 PEE sing 781 n n C2 O2 PEE sing 782 n n C3 O3 PEE sing 783 n n O2 C10 PEE sing 784 n n C31 C30 PEE sing 785 n n C31 C32 PEE sing 786 n n C33 C32 PEE sing 787 n n C33 C34 PEE sing 788 n n C30 O3 PEE sing 789 n n C30 O5 PEE doub 790 n n C10 O4 PEE doub 791 n n C10 C11 PEE sing 792 n n C34 C35 PEE sing 793 n n C11 C12 PEE sing 794 n n C35 C36 PEE sing 795 n n C36 C37 PEE sing 796 n n C37 C38 PEE sing 797 n n C38 C39 PEE doub 798 z n C12 C13 PEE sing 799 n n C39 C40 PEE sing 800 n n C13 C14 PEE sing 801 n n C14 C15 PEE sing 802 n n C40 C41 PEE sing 803 n n C15 C16 PEE sing 804 n n C41 C42 PEE sing 805 n n C16 C17 PEE sing 806 n n C42 C43 PEE sing 807 n n C17 C18 PEE sing 808 n n C43 C44 PEE sing 809 n n C18 C19 PEE doub 810 z n C46 C47 PEE sing 811 n n C46 C45 PEE sing 812 n n C44 C45 PEE sing 813 n n C19 C20 PEE sing 814 n n C20 C21 PEE sing 815 n n C21 C22 PEE sing 816 n n C22 C23 PEE sing 817 n n C23 C24 PEE sing 818 n n C24 C25 PEE sing 819 n n C26 C25 PEE sing 820 n n C26 C27 PEE sing 821 n n C27 H7 PEE sing 822 n n C27 H8 PEE sing 823 n n C27 H82 PEE sing 824 n n C26 H5 PEE sing 825 n n C26 H6 PEE sing 826 n n C25 H12 PEE sing 827 n n C25 H4 PEE sing 828 n n C24 H10 PEE sing 829 n n C24 H11 PEE sing 830 n n C23 H83 PEE sing 831 n n C23 H9 PEE sing 832 n n C22 H2 PEE sing 833 n n C22 H3 PEE sing 834 n n C21 H14 PEE sing 835 n n C21 H1 PEE sing 836 n n C20 H16 PEE sing 837 n n C20 H13 PEE sing 838 n n C19 H18 PEE sing 839 n n C18 H20 PEE sing 840 n n C17 H22 PEE sing 841 n n C17 H19 PEE sing 842 n n C16 H21 PEE sing 843 n n C16 H28 PEE sing 844 n n C15 H23 PEE sing 845 n n C15 H24 PEE sing 846 n n C14 H25 PEE sing 847 n n C14 H26 PEE sing 848 n n C13 H17 PEE sing 849 n n C13 H27 PEE sing 850 n n C12 H15 PEE sing 851 n n C12 H29 PEE sing 852 n n C11 H30 PEE sing 853 n n C11 H31 PEE sing 854 n n C2 H32 PEE sing 855 n n C1 H33 PEE sing 856 n n C1 H34 PEE sing 857 n n O2P H35 PEE sing 858 n n C4 H36 PEE sing 859 n n C4 H37 PEE sing 860 n n C5 H38 PEE sing 861 n n C5 H39 PEE sing 862 n n N H40 PEE sing 863 n n N H41 PEE sing 864 n n C3 H43 PEE sing 865 n n C3 H44 PEE sing 866 n n C31 H45 PEE sing 867 n n C31 H46 PEE sing 868 n n C32 H47 PEE sing 869 n n C32 H48 PEE sing 870 n n C33 H49 PEE sing 871 n n C33 H50 PEE sing 872 n n C34 H51 PEE sing 873 n n C34 H52 PEE sing 874 n n C35 H53 PEE sing 875 n n C35 H54 PEE sing 876 n n C36 H55 PEE sing 877 n n C36 H56 PEE sing 878 n n C37 H57 PEE sing 879 n n C37 H58 PEE sing 880 n n C38 H59 PEE sing 881 n n C39 H60 PEE sing 882 n n C40 H81 PEE sing 883 n n C40 H61 PEE sing 884 n n C41 H80 PEE sing 885 n n C41 H62 PEE sing 886 n n C42 H63 PEE sing 887 n n C42 H64 PEE sing 888 n n C43 H65 PEE sing 889 n n C43 H66 PEE sing 890 n n C44 H67 PEE sing 891 n n C44 H68 PEE sing 892 n n C45 H69 PEE sing 893 n n C45 H70 PEE sing 894 n n C46 H71 PEE sing 895 n n C46 H72 PEE sing 896 n n C47 H73 PEE sing 897 n n C47 H74 PEE sing 898 n n C47 H75 PEE sing 899 n n # _atom_sites.entry_id 3L71 _atom_sites.fract_transf_matrix[1][1] 0.005877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2005 2005 PEE PEE . V 11 PEE A 1 2008 2008 PEE PEE . W 12 HEM C 1 501 501 HEM HEM . X 12 HEM C 1 502 502 HEM HEM . Y 13 AZO C 1 2001 2001 AZO AZO . Z 14 UQ C 1 2002 2002 UQ UQ . AA 11 PEE C 1 2007 2007 PEE PEE . BA 15 GOL C 1 2011 2011 GOL GOL . CA 16 HEC D 1 501 501 HEC HEC . DA 17 CDL D 1 2003 2003 CDL CDL . EA 18 BOG D 1 2009 2009 BOG BOG . FA 18 BOG D 1 2091 2091 BOG BOG . GA 19 FES E 1 501 501 FES FES . HA 17 CDL G 1 2004 2004 CDL CDL . IA 11 PEE N 1 3008 3008 PEE PEE . JA 12 HEM P 1 501 501 HEM HEM . KA 12 HEM P 1 502 502 HEM HEM . LA 18 BOG P 1 2010 2010 BOG BOG . MA 13 AZO P 1 3001 3001 AZO AZO . NA 14 UQ P 1 3002 3002 UQ UQ . OA 11 PEE P 1 3005 3005 PEE PEE . PA 11 PEE P 1 3007 3007 PEE PEE . QA 15 GOL P 1 3011 3011 GOL GOL . RA 16 HEC Q 1 501 501 HEC HEC . SA 17 CDL Q 1 3003 3003 CDL CDL . TA 18 BOG Q 1 3009 3009 BOG BOG . UA 18 BOG Q 1 3091 3091 BOG BOG . VA 19 FES R 1 501 501 FES FES . WA 17 CDL T 1 3004 3004 CDL CDL . XA 20 HOH C 1 381 2 HOH HOH . XA 20 HOH C 2 382 4 HOH HOH . XA 20 HOH C 3 383 108 HOH HOH . XA 20 HOH C 4 384 119 HOH HOH . XA 20 HOH C 5 385 168 HOH HOH . XA 20 HOH C 6 386 222 HOH HOH . XA 20 HOH C 7 1008 1008 HOH HOH . XA 20 HOH C 8 1238 1238 HOH HOH . YA 20 HOH E 1 1289 1289 HOH HOH . ZA 20 HOH P 1 381 1 HOH HOH . ZA 20 HOH P 2 382 5 HOH HOH . ZA 20 HOH P 3 383 6 HOH HOH . ZA 20 HOH P 4 384 28 HOH HOH . ZA 20 HOH P 5 385 35 HOH HOH . ZA 20 HOH P 6 386 109 HOH HOH . ZA 20 HOH P 7 387 214 HOH HOH . ZA 20 HOH P 8 959 959 HOH HOH . ZA 20 HOH P 9 1239 1239 HOH HOH . AB 20 HOH R 1 1230 1230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 PEE . . . V 11 37.552 115.486 62.997 1 134.24 ? C13 PEE 2008 A 1 HETATM 2 C C12 PEE . . . V 11 38.673 115.886 63.981 1 135.57 ? C12 PEE 2008 A 1 HETATM 3 C C11 PEE . . . V 11 40.013 116.208 63.257 1 136.7 ? C11 PEE 2008 A 1 HETATM 4 C C10 PEE . . . V 11 41.017 115.012 63.141 1 137.12 ? C10 PEE 2008 A 1 HETATM 5 O O4 PEE . . . V 11 40.628 113.824 63.155 1 136.95 ? O4 PEE 2008 A 1 HETATM 6 O O2 PEE . . . V 11 42.38 115.416 63.007 1 136.77 ? O2 PEE 2008 A 1 HETATM 7 C C2 PEE . . . V 11 43.415 114.555 63.657 1 137.34 ? C2 PEE 2008 A 1 HETATM 8 C C1 PEE . . . V 11 43.964 113.455 62.672 1 136 ? C1 PEE 2008 A 1 HETATM 9 O O3P PEE . . . V 11 43.462 112.09 62.95 1 134.8 ? O3P PEE 2008 A 1 HETATM 10 P P PEE . . . V 11 43.717 110.819 61.937 1 133.57 ? P PEE 2008 A 1 HETATM 11 O O2P PEE . . . V 11 42.923 111.072 60.557 1 133.48 ? O2P PEE 2008 A 1 HETATM 12 O O1P PEE . . . V 11 43.146 109.477 62.63 1 132.45 ? O1P PEE 2008 A 1 HETATM 13 O O4P PEE . . . V 11 45.332 110.628 61.641 1 134.23 ? O4P PEE 2008 A 1 HETATM 14 C C4 PEE . . . V 11 46.251 109.81 62.456 1 133.81 ? C4 PEE 2008 A 1 HETATM 15 C C5 PEE . . . V 11 47.729 110.279 62.419 1 133.23 ? C5 PEE 2008 A 1 HETATM 16 C C3 PEE . . . V 11 44.532 115.397 64.384 1 138.69 ? C3 PEE 2008 A 1 HETATM 17 O O3 PEE . . . V 11 45.044 114.748 65.622 1 140.62 ? O3 PEE 2008 A 1 HETATM 18 C C30 PEE . . . V 11 45.04 115.541 66.805 1 139.89 ? C30 PEE 2008 A 1 HETATM 19 O O5 PEE . . . V 11 46.004 116.232 67.179 1 140.43 ? O5 PEE 2008 A 1 HETATM 20 C C31 PEE . . . V 11 43.715 115.455 67.626 1 139.11 ? C31 PEE 2008 A 1 HETATM 21 C C32 PEE . . . V 11 43.878 114.872 69.05 1 138.11 ? C32 PEE 2008 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #