data_3L71
#
_model_server_result.job_id            TP58swFbLnSdrGiwVUSnLA 
_model_server_result.datetime_utc      '2024-11-23 17:43:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l71 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"TA","auth_seq_id":3009}' 
#
_entry.id    3L71 
#
_exptl.entry_id    3L71 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          18 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3L71 
_cell.length_a            170.149 
_cell.length_b            181.312 
_cell.length_c            240.501 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L71 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 18 EA N N 
? 18 FA N N 
? 18 LA N N 
? 18 TA N N 
? 18 UA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc16 N SD MET 160 Q MET 160 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 119 n n 
C1 C2 BOG sing 120 n n 
C1 O5 BOG sing 121 n n 
C1 H1 BOG sing 122 n n 
O1 C1' BOG sing 123 n n 
C2 O2 BOG sing 124 n n 
C2 C3 BOG sing 125 n n 
C2 H2 BOG sing 126 n n 
O2 HO2 BOG sing 127 n n 
C3 O3 BOG sing 128 n n 
C3 C4 BOG sing 129 n n 
C3 H3 BOG sing 130 n n 
O3 HO3 BOG sing 131 n n 
C4 O4 BOG sing 132 n n 
C4 C5 BOG sing 133 n n 
C4 H4 BOG sing 134 n n 
O4 HO4 BOG sing 135 n n 
C5 O5 BOG sing 136 n n 
C5 C6 BOG sing 137 n n 
C5 H5 BOG sing 138 n n 
C6 O6 BOG sing 139 n n 
C6 H61 BOG sing 140 n n 
C6 H62 BOG sing 141 n n 
O6 HO6 BOG sing 142 n n 
C1' C2' BOG sing 143 n n 
C1' "H1'1" BOG sing 144 n n 
C1' "H1'2" BOG sing 145 n n 
C2' C3' BOG sing 146 n n 
C2' "H2'1" BOG sing 147 n n 
C2' "H2'2" BOG sing 148 n n 
C3' C4' BOG sing 149 n n 
C3' "H3'1" BOG sing 150 n n 
C3' "H3'2" BOG sing 151 n n 
C4' C5' BOG sing 152 n n 
C4' "H4'1" BOG sing 153 n n 
C4' "H4'2" BOG sing 154 n n 
C5' C6' BOG sing 155 n n 
C5' "H5'1" BOG sing 156 n n 
C5' "H5'2" BOG sing 157 n n 
C6' C7' BOG sing 158 n n 
C6' "H6'1" BOG sing 159 n n 
C6' "H6'2" BOG sing 160 n n 
C7' C8' BOG sing 161 n n 
C7' "H7'1" BOG sing 162 n n 
C7' "H7'2" BOG sing 163 n n 
C8' "H8'1" BOG sing 164 n n 
C8' "H8'2" BOG sing 165 n n 
C8' "H8'3" BOG sing 166 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3L71 
_atom_sites.fract_transf_matrix[1][1]    0.005877 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004158 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 PEE A 1 2005 2005 PEE PEE . 
V 11 PEE A 1 2008 2008 PEE PEE . 
W 12 HEM C 1 501 501 HEM HEM . 
X 12 HEM C 1 502 502 HEM HEM . 
Y 13 AZO C 1 2001 2001 AZO AZO . 
Z 14 UQ C 1 2002 2002 UQ UQ . 
AA 11 PEE C 1 2007 2007 PEE PEE . 
BA 15 GOL C 1 2011 2011 GOL GOL . 
CA 16 HEC D 1 501 501 HEC HEC . 
DA 17 CDL D 1 2003 2003 CDL CDL . 
EA 18 BOG D 1 2009 2009 BOG BOG . 
FA 18 BOG D 1 2091 2091 BOG BOG . 
GA 19 FES E 1 501 501 FES FES . 
HA 17 CDL G 1 2004 2004 CDL CDL . 
IA 11 PEE N 1 3008 3008 PEE PEE . 
JA 12 HEM P 1 501 501 HEM HEM . 
KA 12 HEM P 1 502 502 HEM HEM . 
LA 18 BOG P 1 2010 2010 BOG BOG . 
MA 13 AZO P 1 3001 3001 AZO AZO . 
NA 14 UQ P 1 3002 3002 UQ UQ . 
OA 11 PEE P 1 3005 3005 PEE PEE . 
PA 11 PEE P 1 3007 3007 PEE PEE . 
QA 15 GOL P 1 3011 3011 GOL GOL . 
RA 16 HEC Q 1 501 501 HEC HEC . 
SA 17 CDL Q 1 3003 3003 CDL CDL . 
TA 18 BOG Q 1 3009 3009 BOG BOG . 
UA 18 BOG Q 1 3091 3091 BOG BOG . 
VA 19 FES R 1 501 501 FES FES . 
WA 17 CDL T 1 3004 3004 CDL CDL . 
XA 20 HOH C 1 381 2 HOH HOH . 
XA 20 HOH C 2 382 4 HOH HOH . 
XA 20 HOH C 3 383 108 HOH HOH . 
XA 20 HOH C 4 384 119 HOH HOH . 
XA 20 HOH C 5 385 168 HOH HOH . 
XA 20 HOH C 6 386 222 HOH HOH . 
XA 20 HOH C 7 1008 1008 HOH HOH . 
XA 20 HOH C 8 1238 1238 HOH HOH . 
YA 20 HOH E 1 1289 1289 HOH HOH . 
ZA 20 HOH P 1 381 1 HOH HOH . 
ZA 20 HOH P 2 382 5 HOH HOH . 
ZA 20 HOH P 3 383 6 HOH HOH . 
ZA 20 HOH P 4 384 28 HOH HOH . 
ZA 20 HOH P 5 385 35 HOH HOH . 
ZA 20 HOH P 6 386 109 HOH HOH . 
ZA 20 HOH P 7 387 214 HOH HOH . 
ZA 20 HOH P 8 959 959 HOH HOH . 
ZA 20 HOH P 9 1239 1239 HOH HOH . 
AB 20 HOH R 1 1230 1230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . TA 18 25.779 135.919 115.4 1 90.26 ? C1 BOG 3009 Q 1 
HETATM 2 O O1 BOG . . . TA 18 26.495 134.8 115.871 1 88.43 ? O1 BOG 3009 Q 1 
HETATM 3 C C2 BOG . . . TA 18 24.282 135.548 115.089 1 90.96 ? C2 BOG 3009 Q 1 
HETATM 4 O O2 BOG . . . TA 18 24.2 134.519 114.107 1 91.63 ? O2 BOG 3009 Q 1 
HETATM 5 C C3 BOG . . . TA 18 23.54 136.799 114.594 1 91.21 ? C3 BOG 3009 Q 1 
HETATM 6 O O3 BOG . . . TA 18 22.189 136.479 114.308 1 89.93 ? O3 BOG 3009 Q 1 
HETATM 7 C C4 BOG . . . TA 18 23.631 137.901 115.683 1 91.68 ? C4 BOG 3009 Q 1 
HETATM 8 O O4 BOG . . . TA 18 22.947 139.1 115.257 1 93.45 ? O4 BOG 3009 Q 1 
HETATM 9 C C5 BOG . . . TA 18 25.129 138.218 115.986 1 90.37 ? C5 BOG 3009 Q 1 
HETATM 10 O O5 BOG . . . TA 18 25.847 136.998 116.402 1 90.73 ? O5 BOG 3009 Q 1 
HETATM 11 C C6 BOG . . . TA 18 25.296 139.267 117.093 1 90.38 ? C6 BOG 3009 Q 1 
HETATM 12 O O6 BOG . . . TA 18 24.734 138.829 118.33 1 90.23 ? O6 BOG 3009 Q 1 
HETATM 13 C C1' BOG . . . TA 18 27.509 134.211 115.011 1 85.17 ? C1' BOG 3009 Q 1 
HETATM 14 C C2' BOG . . . TA 18 28.528 133.448 115.857 1 83.13 ? C2' BOG 3009 Q 1 
HETATM 15 C C3' BOG . . . TA 18 28.91 132.116 115.237 1 80.65 ? C3' BOG 3009 Q 1 
HETATM 16 C C4' BOG . . . TA 18 30.427 131.991 115.21 1 78.35 ? C4' BOG 3009 Q 1 
HETATM 17 C C5' BOG . . . TA 18 30.895 130.726 114.493 1 77.69 ? C5' BOG 3009 Q 1 
HETATM 18 C C6' BOG . . . TA 18 32.428 130.611 114.442 1 77.01 ? C6' BOG 3009 Q 1 
HETATM 19 C C7' BOG . . . TA 18 32.834 129.18 114.105 1 76.55 ? C7' BOG 3009 Q 1 
HETATM 20 C C8' BOG . . . TA 18 34.323 129.134 114.071 1 74.35 ? C8' BOG 3009 Q 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    111 
_model_server_stats.query_time_ms           1031 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           20 
#