data_3L71 # _model_server_result.job_id JuYn0OqH6dYAjAAVI4S4sA _model_server_result.datetime_utc '2024-11-06 02:52:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":501}' # _entry.id 3L71 # _exptl.entry_id 3L71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L71 _cell.length_a 170.149 _cell.length_b 181.312 _cell.length_c 240.501 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 CA N N ? 16 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 498 n n FE NB HEC sing 499 n n FE NC HEC sing 500 n n FE ND HEC sing 501 n n CHA C1A HEC doub 502 n n CHA C4D HEC sing 503 n n CHA HHA HEC sing 504 n n CHB C4A HEC doub 505 n n CHB C1B HEC sing 506 n n CHB HHB HEC sing 507 n n CHC C4B HEC doub 508 n n CHC C1C HEC sing 509 n n CHC HHC HEC sing 510 n n CHD C4C HEC doub 511 n n CHD C1D HEC sing 512 n n CHD HHD HEC sing 513 n n NA C1A HEC sing 514 n y NA C4A HEC sing 515 n y C1A C2A HEC sing 516 n y C2A C3A HEC doub 517 n y C2A CAA HEC sing 518 n n C3A C4A HEC sing 519 n y C3A CMA HEC sing 520 n n CMA HMA1 HEC sing 521 n n CMA HMA2 HEC sing 522 n n CMA HMA3 HEC sing 523 n n CAA CBA HEC sing 524 n n CAA HAA1 HEC sing 525 n n CAA HAA2 HEC sing 526 n n CBA CGA HEC sing 527 n n CBA HBA1 HEC sing 528 n n CBA HBA2 HEC sing 529 n n CGA O1A HEC doub 530 n n CGA O2A HEC sing 531 n n O2A H2A HEC sing 532 n n NB C1B HEC sing 533 n y NB C4B HEC sing 534 n y C1B C2B HEC doub 535 n y C2B C3B HEC sing 536 n y C2B CMB HEC sing 537 n n C3B C4B HEC sing 538 n y C3B CAB HEC doub 539 e n CMB HMB1 HEC sing 540 n n CMB HMB2 HEC sing 541 n n CMB HMB3 HEC sing 542 n n CAB CBB HEC sing 543 n n CAB HAB HEC sing 544 n n CBB HBB1 HEC sing 545 n n CBB HBB2 HEC sing 546 n n CBB HBB3 HEC sing 547 n n NC C1C HEC sing 548 n y NC C4C HEC sing 549 n y C1C C2C HEC doub 550 n y C2C C3C HEC sing 551 n y C2C CMC HEC sing 552 n n C3C C4C HEC sing 553 n y C3C CAC HEC doub 554 e n CMC HMC1 HEC sing 555 n n CMC HMC2 HEC sing 556 n n CMC HMC3 HEC sing 557 n n CAC CBC HEC sing 558 n n CAC HAC HEC sing 559 n n CBC HBC1 HEC sing 560 n n CBC HBC2 HEC sing 561 n n CBC HBC3 HEC sing 562 n n ND C1D HEC sing 563 n y ND C4D HEC sing 564 n y C1D C2D HEC doub 565 n y C2D C3D HEC sing 566 n y C2D CMD HEC sing 567 n n C3D C4D HEC doub 568 n y C3D CAD HEC sing 569 n n CMD HMD1 HEC sing 570 n n CMD HMD2 HEC sing 571 n n CMD HMD3 HEC sing 572 n n CAD CBD HEC sing 573 n n CAD HAD1 HEC sing 574 n n CAD HAD2 HEC sing 575 n n CBD CGD HEC sing 576 n n CBD HBD1 HEC sing 577 n n CBD HBD2 HEC sing 578 n n CGD O1D HEC doub 579 n n CGD O2D HEC sing 580 n n O2D H2D HEC sing 581 n n # _atom_sites.entry_id 3L71 _atom_sites.fract_transf_matrix[1][1] 0.005877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2005 2005 PEE PEE . V 11 PEE A 1 2008 2008 PEE PEE . W 12 HEM C 1 501 501 HEM HEM . X 12 HEM C 1 502 502 HEM HEM . Y 13 AZO C 1 2001 2001 AZO AZO . Z 14 UQ C 1 2002 2002 UQ UQ . AA 11 PEE C 1 2007 2007 PEE PEE . BA 15 GOL C 1 2011 2011 GOL GOL . CA 16 HEC D 1 501 501 HEC HEC . DA 17 CDL D 1 2003 2003 CDL CDL . EA 18 BOG D 1 2009 2009 BOG BOG . FA 18 BOG D 1 2091 2091 BOG BOG . GA 19 FES E 1 501 501 FES FES . HA 17 CDL G 1 2004 2004 CDL CDL . IA 11 PEE N 1 3008 3008 PEE PEE . JA 12 HEM P 1 501 501 HEM HEM . KA 12 HEM P 1 502 502 HEM HEM . LA 18 BOG P 1 2010 2010 BOG BOG . MA 13 AZO P 1 3001 3001 AZO AZO . NA 14 UQ P 1 3002 3002 UQ UQ . OA 11 PEE P 1 3005 3005 PEE PEE . PA 11 PEE P 1 3007 3007 PEE PEE . QA 15 GOL P 1 3011 3011 GOL GOL . RA 16 HEC Q 1 501 501 HEC HEC . SA 17 CDL Q 1 3003 3003 CDL CDL . TA 18 BOG Q 1 3009 3009 BOG BOG . UA 18 BOG Q 1 3091 3091 BOG BOG . VA 19 FES R 1 501 501 FES FES . WA 17 CDL T 1 3004 3004 CDL CDL . XA 20 HOH C 1 381 2 HOH HOH . XA 20 HOH C 2 382 4 HOH HOH . XA 20 HOH C 3 383 108 HOH HOH . XA 20 HOH C 4 384 119 HOH HOH . XA 20 HOH C 5 385 168 HOH HOH . XA 20 HOH C 6 386 222 HOH HOH . XA 20 HOH C 7 1008 1008 HOH HOH . XA 20 HOH C 8 1238 1238 HOH HOH . YA 20 HOH E 1 1289 1289 HOH HOH . ZA 20 HOH P 1 381 1 HOH HOH . ZA 20 HOH P 2 382 5 HOH HOH . ZA 20 HOH P 3 383 6 HOH HOH . ZA 20 HOH P 4 384 28 HOH HOH . ZA 20 HOH P 5 385 35 HOH HOH . ZA 20 HOH P 6 386 109 HOH HOH . ZA 20 HOH P 7 387 214 HOH HOH . ZA 20 HOH P 8 959 959 HOH HOH . ZA 20 HOH P 9 1239 1239 HOH HOH . AB 20 HOH R 1 1230 1230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . RA 16 36.558 170.086 106.827 1 67.87 ? FE HEC 501 Q 1 HETATM 2 C CHA HEC . . . RA 16 38.899 168.869 104.726 1 63.87 ? CHA HEC 501 Q 1 HETATM 3 C CHB HEC . . . RA 16 36.898 167.457 108.776 1 64.29 ? CHB HEC 501 Q 1 HETATM 4 C CHC HEC . . . RA 16 34.291 171.38 108.941 1 65.58 ? CHC HEC 501 Q 1 HETATM 5 C CHD HEC . . . RA 16 36.147 172.669 104.791 1 63.11 ? CHD HEC 501 Q 1 HETATM 6 N NA HEC . . . RA 16 37.636 168.486 106.727 1 65.14 ? NA HEC 501 Q 1 HETATM 7 C C1A HEC . . . RA 16 38.598 168.117 105.81 1 64.21 ? C1A HEC 501 Q 1 HETATM 8 C C2A HEC . . . RA 16 39.346 166.929 106.275 1 63.84 ? C2A HEC 501 Q 1 HETATM 9 C C3A HEC . . . RA 16 38.644 166.474 107.307 1 64.06 ? C3A HEC 501 Q 1 HETATM 10 C C4A HEC . . . RA 16 37.671 167.488 107.654 1 64.19 ? C4A HEC 501 Q 1 HETATM 11 C CMA HEC . . . RA 16 38.845 165.131 107.968 1 63.58 ? CMA HEC 501 Q 1 HETATM 12 C CAA HEC . . . RA 16 40.697 166.345 105.961 1 62.38 ? CAA HEC 501 Q 1 HETATM 13 C CBA HEC . . . RA 16 41.064 166.249 104.504 1 63.74 ? CBA HEC 501 Q 1 HETATM 14 C CGA HEC . . . RA 16 42.343 165.451 104.28 1 65.69 ? CGA HEC 501 Q 1 HETATM 15 O O1A HEC . . . RA 16 42.753 165.307 103.101 1 65.34 ? O1A HEC 501 Q 1 HETATM 16 O O2A HEC . . . RA 16 42.937 164.967 105.279 1 64.63 ? O2A HEC 501 Q 1 HETATM 17 N NB HEC . . . RA 16 35.738 169.548 108.494 1 65.54 ? NB HEC 501 Q 1 HETATM 18 C C1B HEC . . . RA 16 35.977 168.395 109.165 1 64.78 ? C1B HEC 501 Q 1 HETATM 19 C C2B HEC . . . RA 16 35.106 168.248 110.308 1 64.56 ? C2B HEC 501 Q 1 HETATM 20 C C3B HEC . . . RA 16 34.419 169.363 110.383 1 65.78 ? C3B HEC 501 Q 1 HETATM 21 C C4B HEC . . . RA 16 34.794 170.17 109.25 1 65.52 ? C4B HEC 501 Q 1 HETATM 22 C CMB HEC . . . RA 16 34.977 167.101 111.293 1 63.46 ? CMB HEC 501 Q 1 HETATM 23 C CAB HEC . . . RA 16 33.407 169.837 111.404 1 69.95 ? CAB HEC 501 Q 1 HETATM 24 C CBB HEC . . . RA 16 34.053 169.764 112.786 1 70.03 ? CBB HEC 501 Q 1 HETATM 25 N NC HEC . . . RA 16 35.51 171.71 106.876 1 66.32 ? NC HEC 501 Q 1 HETATM 26 C C1C HEC . . . RA 16 34.631 172.109 107.838 1 66.36 ? C1C HEC 501 Q 1 HETATM 27 C C2C HEC . . . RA 16 33.918 173.293 107.438 1 67.23 ? C2C HEC 501 Q 1 HETATM 28 C C3C HEC . . . RA 16 34.349 173.561 106.207 1 68.34 ? C3C HEC 501 Q 1 HETATM 29 C C4C HEC . . . RA 16 35.406 172.647 105.915 1 65.13 ? C4C HEC 501 Q 1 HETATM 30 C CMC HEC . . . RA 16 32.741 173.954 108.144 1 66.51 ? CMC HEC 501 Q 1 HETATM 31 C CAC HEC . . . RA 16 33.834 174.481 105.111 1 71.2 ? CAC HEC 501 Q 1 HETATM 32 C CBC HEC . . . RA 16 34.012 175.968 105.436 1 71.63 ? CBC HEC 501 Q 1 HETATM 33 N ND HEC . . . RA 16 37.365 170.669 105.153 1 64.35 ? ND HEC 501 Q 1 HETATM 34 C C1D HEC . . . RA 16 37.075 171.784 104.437 1 62.55 ? C1D HEC 501 Q 1 HETATM 35 C C2D HEC . . . RA 16 37.935 171.95 103.28 1 62.36 ? C2D HEC 501 Q 1 HETATM 36 C C3D HEC . . . RA 16 38.746 170.879 103.275 1 63.88 ? C3D HEC 501 Q 1 HETATM 37 C C4D HEC . . . RA 16 38.349 170.068 104.424 1 63.98 ? C4D HEC 501 Q 1 HETATM 38 C CMD HEC . . . RA 16 37.96 173.083 102.26 1 60.01 ? CMD HEC 501 Q 1 HETATM 39 C CAD HEC . . . RA 16 39.816 170.614 102.236 1 65.23 ? CAD HEC 501 Q 1 HETATM 40 C CBD HEC . . . RA 16 41.225 170.751 102.763 1 68.58 ? CBD HEC 501 Q 1 HETATM 41 C CGD HEC . . . RA 16 42.272 170.51 101.681 1 71.8 ? CGD HEC 501 Q 1 HETATM 42 O O1D HEC . . . RA 16 42.166 169.483 100.972 1 72.79 ? O1D HEC 501 Q 1 HETATM 43 O O2D HEC . . . RA 16 43.202 171.336 101.541 1 72.2 ? O2D HEC 501 Q 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #