data_3L72
#
_model_server_result.job_id            3KFIPrIqvB1mI6gvzqdQHg 
_model_server_result.datetime_utc      '2024-10-14 05:26:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l72 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":2001}' 
#
_entry.id    3L72 
#
_exptl.entry_id    3L72 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              453.271 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl (2E)-{2-[(4-iodo-2,5-dimethylphenoxy)methyl]phenyl}(methoxyimino)ethanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3L72 
_cell.length_a            172.614 
_cell.length_b            181.548 
_cell.length_c            241.033 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L72 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 W N N 
? 12 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 IA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 JA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 IA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 JA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc16 N SD MET 160 Q MET 160 1_555 RA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 VA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 VA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
#
_chem_comp.formula           'C19 H20 I N O4' 
_chem_comp.formula_weight    453.271 
_chem_comp.id                IKR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl (2E)-{2-[(4-iodo-2,5-dimethylphenoxy)methyl]phenyl}(methoxyimino)ethanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IKR doub 638 n y 
C1 C6 IKR sing 639 n y 
C1 I1 IKR sing 640 n n 
C2 C3 IKR sing 641 n y 
C2 C40 IKR sing 642 n n 
C3 C4 IKR doub 643 n y 
C4 C5 IKR sing 644 n y 
C4 O15 IKR sing 645 n n 
C5 C6 IKR doub 646 n y 
C5 C11 IKR sing 647 n n 
O15 C16 IKR sing 648 n n 
C16 C17 IKR sing 649 n n 
C17 C20 IKR doub 650 n y 
C17 C24 IKR sing 651 n y 
C20 C21 IKR sing 652 n y 
C20 C29 IKR sing 653 n n 
C21 C22 IKR doub 654 n y 
C22 C23 IKR sing 655 n y 
C23 C24 IKR doub 656 n y 
C29 C30 IKR sing 657 n n 
C29 N37 IKR doub 658 n n 
C30 O31 IKR sing 659 n n 
C30 O36 IKR doub 660 n n 
O31 C32 IKR sing 661 n n 
N37 O38 IKR sing 662 n n 
O38 C39 IKR sing 663 n n 
C3 H3 IKR sing 664 n n 
C6 H6 IKR sing 665 n n 
C11 H11 IKR sing 666 n n 
C11 H11A IKR sing 667 n n 
C11 H11B IKR sing 668 n n 
C16 H16 IKR sing 669 e n 
C16 H16A IKR sing 670 n n 
C21 H21 IKR sing 671 n n 
C22 H22 IKR sing 672 n n 
C23 H23 IKR sing 673 n n 
C24 H24 IKR sing 674 n n 
C32 H32 IKR sing 675 n n 
C32 H32A IKR sing 676 n n 
C32 H32B IKR sing 677 n n 
C39 H39 IKR sing 678 n n 
C39 H39A IKR sing 679 n n 
C39 H39B IKR sing 680 n n 
C40 H40 IKR sing 681 n n 
C40 H40A IKR sing 682 n n 
C40 H40B IKR sing 683 n n 
#
_atom_sites.entry_id                     3L72 
_atom_sites.fract_transf_matrix[1][1]    0.005793 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005508 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 HEM C 1 501 501 HEM HEM . 
V 11 HEM C 1 502 502 HEM HEM . 
W 12 IKR C 1 2001 2001 IKR IKR . 
X 13 UQ C 1 2002 2002 UQ UQ . 
Y 14 CDL C 1 2004 2004 CDL CDL . 
Z 15 PEE C 1 2007 2007 PEE PEE . 
AA 15 PEE C 1 2008 2008 PEE PEE . 
BA 16 GOL C 1 2011 2011 GOL GOL . 
CA 17 HEC D 1 501 501 HEC HEC . 
DA 14 CDL D 1 2003 2003 CDL CDL . 
EA 18 BOG D 1 2009 2009 BOG BOG . 
FA 18 BOG D 1 2091 2091 BOG BOG . 
GA 19 FES E 1 501 501 FES FES . 
HA 15 PEE E 1 2005 2005 PEE PEE . 
IA 11 HEM P 1 501 501 HEM HEM . 
JA 11 HEM P 1 502 502 HEM HEM . 
KA 18 BOG P 1 2010 2010 BOG BOG . 
LA 12 IKR P 1 3001 3001 IKR IKR . 
MA 13 UQ P 1 3002 3002 UQ UQ . 
NA 14 CDL P 1 3004 3004 CDL CDL . 
OA 15 PEE P 1 3007 3007 PEE PEE . 
PA 15 PEE P 1 3008 3008 PEE PEE . 
QA 16 GOL P 1 3011 3011 GOL GOL . 
RA 17 HEC Q 1 501 501 HEC HEC . 
SA 14 CDL Q 1 3003 3003 CDL CDL . 
TA 18 BOG Q 1 3009 3009 BOG BOG . 
UA 18 BOG Q 1 3091 3091 BOG BOG . 
VA 19 FES R 1 501 501 FES FES . 
WA 15 PEE R 1 3005 3005 PEE PEE . 
XA 20 HOH C 1 381 2 HOH HOH . 
XA 20 HOH C 2 382 4 HOH HOH . 
XA 20 HOH C 3 383 108 HOH HOH . 
XA 20 HOH C 4 384 119 HOH HOH . 
XA 20 HOH C 5 385 168 HOH HOH . 
XA 20 HOH C 6 386 222 HOH HOH . 
XA 20 HOH C 7 1008 1008 HOH HOH . 
XA 20 HOH C 8 1238 1238 HOH HOH . 
YA 20 HOH E 1 1289 1289 HOH HOH . 
ZA 20 HOH P 1 381 1 HOH HOH . 
ZA 20 HOH P 2 382 6 HOH HOH . 
ZA 20 HOH P 3 383 28 HOH HOH . 
ZA 20 HOH P 4 384 35 HOH HOH . 
ZA 20 HOH P 5 385 109 HOH HOH . 
ZA 20 HOH P 6 386 214 HOH HOH . 
ZA 20 HOH P 7 959 959 HOH HOH . 
ZA 20 HOH P 8 1239 1239 HOH HOH . 
AB 20 HOH R 1 1230 1230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IKR . . . W 12 8.992 127.697 82.511 1 44.63 ? C1 IKR 2001 C 1 
HETATM 2 C C2 IKR . . . W 12 9.84 128.81 82.751 1 43.37 ? C2 IKR 2001 C 1 
HETATM 3 C C3 IKR . . . W 12 9.386 130.1 82.428 1 40.8 ? C3 IKR 2001 C 1 
HETATM 4 C C4 IKR . . . W 12 8.082 130.266 81.852 1 40.37 ? C4 IKR 2001 C 1 
HETATM 5 C C5 IKR . . . W 12 7.238 129.135 81.606 1 39.45 ? C5 IKR 2001 C 1 
HETATM 6 C C6 IKR . . . W 12 7.711 127.862 81.942 1 42.38 ? C6 IKR 2001 C 1 
HETATM 7 C C11 IKR . . . W 12 5.878 129.254 81.009 1 38.31 ? C11 IKR 2001 C 1 
HETATM 8 O O15 IKR . . . W 12 7.634 131.53 81.544 1 41.07 ? O15 IKR 2001 C 1 
HETATM 9 C C16 IKR . . . W 12 8.626 132.544 81.435 1 38.65 ? C16 IKR 2001 C 1 
HETATM 10 C C17 IKR . . . W 12 8.05 133.69 80.661 1 39.59 ? C17 IKR 2001 C 1 
HETATM 11 C C20 IKR . . . W 12 8.876 134.56 79.883 1 40.11 ? C20 IKR 2001 C 1 
HETATM 12 C C21 IKR . . . W 12 8.309 135.662 79.146 1 40.62 ? C21 IKR 2001 C 1 
HETATM 13 C C22 IKR . . . W 12 6.906 135.897 79.184 1 40.36 ? C22 IKR 2001 C 1 
HETATM 14 C C23 IKR . . . W 12 6.089 135.03 79.954 1 41.03 ? C23 IKR 2001 C 1 
HETATM 15 C C24 IKR . . . W 12 6.63 133.944 80.686 1 39.75 ? C24 IKR 2001 C 1 
HETATM 16 C C29 IKR . . . W 12 10.348 134.383 79.794 1 39.95 ? C29 IKR 2001 C 1 
HETATM 17 C C30 IKR . . . W 12 10.874 133.557 78.635 1 41.92 ? C30 IKR 2001 C 1 
HETATM 18 O O31 IKR . . . W 12 12.2 133.342 78.807 1 42.27 ? O31 IKR 2001 C 1 
HETATM 19 C C32 IKR . . . W 12 12.832 132.568 77.767 1 40.54 ? C32 IKR 2001 C 1 
HETATM 20 O O36 IKR . . . W 12 10.154 133.177 77.715 1 45.87 ? O36 IKR 2001 C 1 
HETATM 21 N N37 IKR . . . W 12 11.222 134.875 80.611 1 40.12 ? N37 IKR 2001 C 1 
HETATM 22 O O38 IKR . . . W 12 10.622 135.622 81.642 1 41.8 ? O38 IKR 2001 C 1 
HETATM 23 C C39 IKR . . . W 12 11.632 136.145 82.484 1 42.17 ? C39 IKR 2001 C 1 
HETATM 24 C C40 IKR . . . W 12 11.288 128.776 83.369 1 41.17 ? C40 IKR 2001 C 1 
HETATM 25 I I1 IKR . . . W 12 9.653 125.829 82.999 1 54.61 ? I1 IKR 2001 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           25 
#