data_3L73
#
_model_server_result.job_id            oabjF-K2lsQA6z8Twx79qg 
_model_server_result.datetime_utc      '2024-11-06 01:26:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l73 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"LA","auth_seq_id":3001}' 
#
_entry.id    3L73 
#
_exptl.entry_id    3L73 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              335.4 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[7-(3,3-dimethylbut-1-yn-1-yl)naphthalen-1-yl]-5-methoxy-2-methyl-2,4-dihydro-3H-1,2,4-triazol-3-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3L73 
_cell.length_a            171.499 
_cell.length_b            182.934 
_cell.length_c            241.028 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L73 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 X N N 
? 13 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 BA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 BA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 FA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 FA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 FA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 FA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 IA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 JA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 IA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 JA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 QA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc16 N SD MET 160 Q MET 160 1_555 QA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 UA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 UA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 UA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 UA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
#
_chem_comp.formula           'C20 H21 N3 O2' 
_chem_comp.formula_weight    335.4 
_chem_comp.id                JZZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[7-(3,3-dimethylbut-1-yn-1-yl)naphthalen-1-yl]-5-methoxy-2-methyl-2,4-dihydro-3H-1,2,4-triazol-3-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C3 JZZ sing 659 n n 
N2 C6 JZZ sing 660 n n 
N2 CAN JZZ sing 661 n n 
C3 O3 JZZ sing 662 n n 
C3 N4 JZZ doub 663 n n 
O3 C27 JZZ sing 664 n n 
N4 N5 JZZ sing 665 n n 
N5 C6 JZZ sing 666 n n 
N5 C7 JZZ sing 667 n n 
C6 O6 JZZ doub 668 n n 
CAA CAH JZZ sing 669 n n 
CAB CAC JZZ doub 670 n y 
CAB CAK JZZ sing 671 n y 
CAC CAD JZZ sing 672 n y 
CAD CAE JZZ doub 673 n y 
CAD CAM JZZ sing 674 n y 
CAE CAF JZZ sing 675 n y 
CAF CAO JZZ doub 676 n y 
CAG CAH JZZ sing 677 n n 
CAH CAI JZZ sing 678 n n 
CAH CAP JZZ sing 679 n n 
CAI CAJ JZZ trip 680 n n 
CAJ CAK JZZ sing 681 n n 
CAK CAL JZZ doub 682 n y 
CAL CAM JZZ sing 683 n y 
CAM CAN JZZ doub 684 n y 
CAN CAO JZZ sing 685 n y 
C7 H7 JZZ sing 686 n n 
C7 H7A JZZ sing 687 n n 
C7 H7B JZZ sing 688 n n 
C27 H27 JZZ sing 689 n n 
C27 H27A JZZ sing 690 n n 
C27 H27B JZZ sing 691 n n 
CAA HAA JZZ sing 692 n n 
CAA HAAA JZZ sing 693 n n 
CAA HAAB JZZ sing 694 n n 
CAB HAB JZZ sing 695 n n 
CAC HAC JZZ sing 696 n n 
CAE HAE JZZ sing 697 n n 
CAF HAF JZZ sing 698 n n 
CAG HAG JZZ sing 699 n n 
CAG HAGA JZZ sing 700 n n 
CAG HAGB JZZ sing 701 n n 
CAL HAL JZZ sing 702 n n 
CAO HAO JZZ sing 703 n n 
CAP HAP JZZ sing 704 n n 
CAP HAPA JZZ sing 705 n n 
CAP HAPB JZZ sing 706 n n 
#
_atom_sites.entry_id                     3L73 
_atom_sites.fract_transf_matrix[1][1]    0.005831 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005466 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 PEE A 1 2008 2008 PEE PEE . 
V 12 HEM C 1 501 501 HEM HEM . 
W 12 HEM C 1 502 502 HEM HEM . 
X 13 JZZ C 1 2001 2001 JZZ JZZ . 
Y 14 UQ C 1 2002 2002 UQ UQ . 
Z 11 PEE C 1 2007 2007 PEE PEE . 
AA 15 GOL C 1 2011 2011 GOL GOL . 
BA 16 HEC D 1 501 501 HEC HEC . 
CA 17 CDL D 1 2003 2003 CDL CDL . 
DA 18 BOG D 1 2009 2009 BOG BOG . 
EA 18 BOG D 1 2091 2091 BOG BOG . 
FA 19 FES E 1 501 501 FES FES . 
GA 11 PEE E 1 2005 2005 PEE PEE . 
HA 17 CDL G 1 2004 2004 CDL CDL . 
IA 12 HEM P 1 501 501 HEM HEM . 
JA 12 HEM P 1 502 502 HEM HEM . 
KA 18 BOG P 1 2010 2010 BOG BOG . 
LA 13 JZZ P 1 3001 3001 JZZ JZZ . 
MA 14 UQ P 1 3002 3002 UQ UQ . 
NA 11 PEE P 1 3007 3007 PEE PEE . 
OA 11 PEE P 1 3008 3008 PEE PEE . 
PA 15 GOL P 1 3011 3011 GOL GOL . 
QA 16 HEC Q 1 501 501 HEC HEC . 
RA 17 CDL Q 1 3003 3003 CDL CDL . 
SA 18 BOG Q 1 3009 3009 BOG BOG . 
TA 18 BOG Q 1 3091 3091 BOG BOG . 
UA 19 FES R 1 501 501 FES FES . 
VA 11 PEE R 1 3005 3005 PEE PEE . 
WA 17 CDL T 1 3004 3004 CDL CDL . 
XA 20 HOH C 1 381 2 HOH HOH . 
XA 20 HOH C 2 382 4 HOH HOH . 
XA 20 HOH C 3 383 108 HOH HOH . 
XA 20 HOH C 4 384 119 HOH HOH . 
XA 20 HOH C 5 385 168 HOH HOH . 
XA 20 HOH C 6 386 222 HOH HOH . 
XA 20 HOH C 7 1008 1008 HOH HOH . 
XA 20 HOH C 8 1238 1238 HOH HOH . 
YA 20 HOH E 1 1289 1289 HOH HOH . 
ZA 20 HOH P 1 381 1 HOH HOH . 
ZA 20 HOH P 2 382 5 HOH HOH . 
ZA 20 HOH P 3 383 6 HOH HOH . 
ZA 20 HOH P 4 384 28 HOH HOH . 
ZA 20 HOH P 5 385 35 HOH HOH . 
ZA 20 HOH P 6 386 109 HOH HOH . 
ZA 20 HOH P 7 387 214 HOH HOH . 
ZA 20 HOH P 8 959 959 HOH HOH . 
ZA 20 HOH P 9 1239 1239 HOH HOH . 
AB 20 HOH R 1 1230 1230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 JZZ . . . LA 13 46.808 146.691 93.186 1 77.92 ? N2 JZZ 3001 P 1 
HETATM 2 C C3 JZZ . . . LA 13 45.868 146.389 92.297 1 77.66 ? C3 JZZ 3001 P 1 
HETATM 3 O O3 JZZ . . . LA 13 45.62 147.061 91.142 1 78.18 ? O3 JZZ 3001 P 1 
HETATM 4 N N4 JZZ . . . LA 13 45.206 145.314 92.722 1 77.44 ? N4 JZZ 3001 P 1 
HETATM 5 N N5 JZZ . . . LA 13 45.698 144.969 93.8 1 77.79 ? N5 JZZ 3001 P 1 
HETATM 6 C C6 JZZ . . . LA 13 46.694 145.782 94.146 1 78.13 ? C6 JZZ 3001 P 1 
HETATM 7 O O6 JZZ . . . LA 13 47.366 145.717 95.169 1 80.05 ? O6 JZZ 3001 P 1 
HETATM 8 C C7 JZZ . . . LA 13 45.262 143.8 94.594 1 76.57 ? C7 JZZ 3001 P 1 
HETATM 9 C C27 JZZ . . . LA 13 44.223 146.977 90.848 1 79.24 ? C27 JZZ 3001 P 1 
HETATM 10 C CAA JZZ . . . LA 13 49.896 141.545 89.595 1 76.59 ? CAA JZZ 3001 P 1 
HETATM 11 C CAB JZZ . . . LA 13 51.464 146.899 91.528 1 77.59 ? CAB JZZ 3001 P 1 
HETATM 12 C CAC JZZ . . . LA 13 51.167 148.167 92.019 1 75.87 ? CAC JZZ 3001 P 1 
HETATM 13 C CAD JZZ . . . LA 13 49.913 148.43 92.544 1 74.98 ? CAD JZZ 3001 P 1 
HETATM 14 C CAE JZZ . . . LA 13 49.618 149.688 93.066 1 74.84 ? CAE JZZ 3001 P 1 
HETATM 15 C CAF JZZ . . . LA 13 48.366 149.936 93.616 1 75.62 ? CAF JZZ 3001 P 1 
HETATM 16 C CAG JZZ . . . LA 13 51.709 141.212 91.282 1 75.91 ? CAG JZZ 3001 P 1 
HETATM 17 C CAH JZZ . . . LA 13 51.219 142.096 90.133 1 76.45 ? CAH JZZ 3001 P 1 
HETATM 18 C CAI JZZ . . . LA 13 50.99 143.454 90.636 1 78.15 ? CAI JZZ 3001 P 1 
HETATM 19 C CAJ JZZ . . . LA 13 50.78 144.585 91.061 1 79.79 ? CAJ JZZ 3001 P 1 
HETATM 20 C CAK JZZ . . . LA 13 50.5 145.895 91.563 1 79.06 ? CAK JZZ 3001 P 1 
HETATM 21 C CAL JZZ . . . LA 13 49.242 146.162 92.088 1 77.96 ? CAL JZZ 3001 P 1 
HETATM 22 C CAM JZZ . . . LA 13 48.949 147.43 92.581 1 76.05 ? CAM JZZ 3001 P 1 
HETATM 23 C CAN JZZ . . . LA 13 47.698 147.675 93.128 1 76.89 ? CAN JZZ 3001 P 1 
HETATM 24 C CAO JZZ . . . LA 13 47.404 148.933 93.649 1 76.72 ? CAO JZZ 3001 P 1 
HETATM 25 C CAP JZZ . . . LA 13 52.264 142.154 89.018 1 75.77 ? CAP JZZ 3001 P 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#