data_3L73 # _model_server_result.job_id aEQfSIFRnjoHwQJgnX0wKQ _model_server_result.datetime_utc '2024-11-27 06:27:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":3001}' # _entry.id 3L73 # _exptl.entry_id 3L73 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.4 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[7-(3,3-dimethylbut-1-yn-1-yl)naphthalen-1-yl]-5-methoxy-2-methyl-2,4-dihydro-3H-1,2,4-triazol-3-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L73 _cell.length_a 171.499 _cell.length_b 182.934 _cell.length_c 241.028 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 X N N ? 13 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 BA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 BA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 FA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 FA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 FA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 FA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 IA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 JA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 IA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 JA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 QA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 QA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 UA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 UA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 UA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 UA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C20 H21 N3 O2' _chem_comp.formula_weight 335.4 _chem_comp.id JZZ _chem_comp.mon_nstd_flag . _chem_comp.name 4-[7-(3,3-dimethylbut-1-yn-1-yl)naphthalen-1-yl]-5-methoxy-2-methyl-2,4-dihydro-3H-1,2,4-triazol-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C3 JZZ sing 659 n n N2 C6 JZZ sing 660 n n N2 CAN JZZ sing 661 n n C3 O3 JZZ sing 662 n n C3 N4 JZZ doub 663 n n O3 C27 JZZ sing 664 n n N4 N5 JZZ sing 665 n n N5 C6 JZZ sing 666 n n N5 C7 JZZ sing 667 n n C6 O6 JZZ doub 668 n n CAA CAH JZZ sing 669 n n CAB CAC JZZ doub 670 n y CAB CAK JZZ sing 671 n y CAC CAD JZZ sing 672 n y CAD CAE JZZ doub 673 n y CAD CAM JZZ sing 674 n y CAE CAF JZZ sing 675 n y CAF CAO JZZ doub 676 n y CAG CAH JZZ sing 677 n n CAH CAI JZZ sing 678 n n CAH CAP JZZ sing 679 n n CAI CAJ JZZ trip 680 n n CAJ CAK JZZ sing 681 n n CAK CAL JZZ doub 682 n y CAL CAM JZZ sing 683 n y CAM CAN JZZ doub 684 n y CAN CAO JZZ sing 685 n y C7 H7 JZZ sing 686 n n C7 H7A JZZ sing 687 n n C7 H7B JZZ sing 688 n n C27 H27 JZZ sing 689 n n C27 H27A JZZ sing 690 n n C27 H27B JZZ sing 691 n n CAA HAA JZZ sing 692 n n CAA HAAA JZZ sing 693 n n CAA HAAB JZZ sing 694 n n CAB HAB JZZ sing 695 n n CAC HAC JZZ sing 696 n n CAE HAE JZZ sing 697 n n CAF HAF JZZ sing 698 n n CAG HAG JZZ sing 699 n n CAG HAGA JZZ sing 700 n n CAG HAGB JZZ sing 701 n n CAL HAL JZZ sing 702 n n CAO HAO JZZ sing 703 n n CAP HAP JZZ sing 704 n n CAP HAPA JZZ sing 705 n n CAP HAPB JZZ sing 706 n n # _atom_sites.entry_id 3L73 _atom_sites.fract_transf_matrix[1][1] 0.005831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2008 2008 PEE PEE . V 12 HEM C 1 501 501 HEM HEM . W 12 HEM C 1 502 502 HEM HEM . X 13 JZZ C 1 2001 2001 JZZ JZZ . Y 14 UQ C 1 2002 2002 UQ UQ . Z 11 PEE C 1 2007 2007 PEE PEE . AA 15 GOL C 1 2011 2011 GOL GOL . BA 16 HEC D 1 501 501 HEC HEC . CA 17 CDL D 1 2003 2003 CDL CDL . DA 18 BOG D 1 2009 2009 BOG BOG . EA 18 BOG D 1 2091 2091 BOG BOG . FA 19 FES E 1 501 501 FES FES . GA 11 PEE E 1 2005 2005 PEE PEE . HA 17 CDL G 1 2004 2004 CDL CDL . IA 12 HEM P 1 501 501 HEM HEM . JA 12 HEM P 1 502 502 HEM HEM . KA 18 BOG P 1 2010 2010 BOG BOG . LA 13 JZZ P 1 3001 3001 JZZ JZZ . MA 14 UQ P 1 3002 3002 UQ UQ . NA 11 PEE P 1 3007 3007 PEE PEE . OA 11 PEE P 1 3008 3008 PEE PEE . PA 15 GOL P 1 3011 3011 GOL GOL . QA 16 HEC Q 1 501 501 HEC HEC . RA 17 CDL Q 1 3003 3003 CDL CDL . SA 18 BOG Q 1 3009 3009 BOG BOG . TA 18 BOG Q 1 3091 3091 BOG BOG . UA 19 FES R 1 501 501 FES FES . VA 11 PEE R 1 3005 3005 PEE PEE . WA 17 CDL T 1 3004 3004 CDL CDL . XA 20 HOH C 1 381 2 HOH HOH . XA 20 HOH C 2 382 4 HOH HOH . XA 20 HOH C 3 383 108 HOH HOH . XA 20 HOH C 4 384 119 HOH HOH . XA 20 HOH C 5 385 168 HOH HOH . XA 20 HOH C 6 386 222 HOH HOH . XA 20 HOH C 7 1008 1008 HOH HOH . XA 20 HOH C 8 1238 1238 HOH HOH . YA 20 HOH E 1 1289 1289 HOH HOH . ZA 20 HOH P 1 381 1 HOH HOH . ZA 20 HOH P 2 382 5 HOH HOH . ZA 20 HOH P 3 383 6 HOH HOH . ZA 20 HOH P 4 384 28 HOH HOH . ZA 20 HOH P 5 385 35 HOH HOH . ZA 20 HOH P 6 386 109 HOH HOH . ZA 20 HOH P 7 387 214 HOH HOH . ZA 20 HOH P 8 959 959 HOH HOH . ZA 20 HOH P 9 1239 1239 HOH HOH . AB 20 HOH R 1 1230 1230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 JZZ . . . LA 13 46.808 146.691 93.186 1 77.92 ? N2 JZZ 3001 P 1 HETATM 2 C C3 JZZ . . . LA 13 45.868 146.389 92.297 1 77.66 ? C3 JZZ 3001 P 1 HETATM 3 O O3 JZZ . . . LA 13 45.62 147.061 91.142 1 78.18 ? O3 JZZ 3001 P 1 HETATM 4 N N4 JZZ . . . LA 13 45.206 145.314 92.722 1 77.44 ? N4 JZZ 3001 P 1 HETATM 5 N N5 JZZ . . . LA 13 45.698 144.969 93.8 1 77.79 ? N5 JZZ 3001 P 1 HETATM 6 C C6 JZZ . . . LA 13 46.694 145.782 94.146 1 78.13 ? C6 JZZ 3001 P 1 HETATM 7 O O6 JZZ . . . LA 13 47.366 145.717 95.169 1 80.05 ? O6 JZZ 3001 P 1 HETATM 8 C C7 JZZ . . . LA 13 45.262 143.8 94.594 1 76.57 ? C7 JZZ 3001 P 1 HETATM 9 C C27 JZZ . . . LA 13 44.223 146.977 90.848 1 79.24 ? C27 JZZ 3001 P 1 HETATM 10 C CAA JZZ . . . LA 13 49.896 141.545 89.595 1 76.59 ? CAA JZZ 3001 P 1 HETATM 11 C CAB JZZ . . . LA 13 51.464 146.899 91.528 1 77.59 ? CAB JZZ 3001 P 1 HETATM 12 C CAC JZZ . . . LA 13 51.167 148.167 92.019 1 75.87 ? CAC JZZ 3001 P 1 HETATM 13 C CAD JZZ . . . LA 13 49.913 148.43 92.544 1 74.98 ? CAD JZZ 3001 P 1 HETATM 14 C CAE JZZ . . . LA 13 49.618 149.688 93.066 1 74.84 ? CAE JZZ 3001 P 1 HETATM 15 C CAF JZZ . . . LA 13 48.366 149.936 93.616 1 75.62 ? CAF JZZ 3001 P 1 HETATM 16 C CAG JZZ . . . LA 13 51.709 141.212 91.282 1 75.91 ? CAG JZZ 3001 P 1 HETATM 17 C CAH JZZ . . . LA 13 51.219 142.096 90.133 1 76.45 ? CAH JZZ 3001 P 1 HETATM 18 C CAI JZZ . . . LA 13 50.99 143.454 90.636 1 78.15 ? CAI JZZ 3001 P 1 HETATM 19 C CAJ JZZ . . . LA 13 50.78 144.585 91.061 1 79.79 ? CAJ JZZ 3001 P 1 HETATM 20 C CAK JZZ . . . LA 13 50.5 145.895 91.563 1 79.06 ? CAK JZZ 3001 P 1 HETATM 21 C CAL JZZ . . . LA 13 49.242 146.162 92.088 1 77.96 ? CAL JZZ 3001 P 1 HETATM 22 C CAM JZZ . . . LA 13 48.949 147.43 92.581 1 76.05 ? CAM JZZ 3001 P 1 HETATM 23 C CAN JZZ . . . LA 13 47.698 147.675 93.128 1 76.89 ? CAN JZZ 3001 P 1 HETATM 24 C CAO JZZ . . . LA 13 47.404 148.933 93.649 1 76.72 ? CAO JZZ 3001 P 1 HETATM 25 C CAP JZZ . . . LA 13 52.264 142.154 89.018 1 75.77 ? CAP JZZ 3001 P 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #