data_3L73 # _model_server_result.job_id -w3i6BH5-MCSs4oi_gwVZA _model_server_result.datetime_utc '2024-11-06 01:44:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QA","auth_seq_id":501}' # _entry.id 3L73 # _exptl.entry_id 3L73 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L73 _cell.length_a 171.499 _cell.length_b 182.934 _cell.length_c 241.028 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 BA N N ? 16 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 BA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 BA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 FA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 FA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 FA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 FA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 IA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 JA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 IA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 JA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 QA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 QA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 UA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 UA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 UA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 UA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 449 n n FE NB HEC sing 450 n n FE NC HEC sing 451 n n FE ND HEC sing 452 n n CHA C1A HEC doub 453 n n CHA C4D HEC sing 454 n n CHA HHA HEC sing 455 n n CHB C4A HEC doub 456 n n CHB C1B HEC sing 457 n n CHB HHB HEC sing 458 n n CHC C4B HEC doub 459 n n CHC C1C HEC sing 460 n n CHC HHC HEC sing 461 n n CHD C4C HEC doub 462 n n CHD C1D HEC sing 463 n n CHD HHD HEC sing 464 n n NA C1A HEC sing 465 n y NA C4A HEC sing 466 n y C1A C2A HEC sing 467 n y C2A C3A HEC doub 468 n y C2A CAA HEC sing 469 n n C3A C4A HEC sing 470 n y C3A CMA HEC sing 471 n n CMA HMA1 HEC sing 472 n n CMA HMA2 HEC sing 473 n n CMA HMA3 HEC sing 474 n n CAA CBA HEC sing 475 n n CAA HAA1 HEC sing 476 n n CAA HAA2 HEC sing 477 n n CBA CGA HEC sing 478 n n CBA HBA1 HEC sing 479 n n CBA HBA2 HEC sing 480 n n CGA O1A HEC doub 481 n n CGA O2A HEC sing 482 n n O2A H2A HEC sing 483 n n NB C1B HEC sing 484 n y NB C4B HEC sing 485 n y C1B C2B HEC doub 486 n y C2B C3B HEC sing 487 n y C2B CMB HEC sing 488 n n C3B C4B HEC sing 489 n y C3B CAB HEC doub 490 e n CMB HMB1 HEC sing 491 n n CMB HMB2 HEC sing 492 n n CMB HMB3 HEC sing 493 n n CAB CBB HEC sing 494 n n CAB HAB HEC sing 495 n n CBB HBB1 HEC sing 496 n n CBB HBB2 HEC sing 497 n n CBB HBB3 HEC sing 498 n n NC C1C HEC sing 499 n y NC C4C HEC sing 500 n y C1C C2C HEC doub 501 n y C2C C3C HEC sing 502 n y C2C CMC HEC sing 503 n n C3C C4C HEC sing 504 n y C3C CAC HEC doub 505 e n CMC HMC1 HEC sing 506 n n CMC HMC2 HEC sing 507 n n CMC HMC3 HEC sing 508 n n CAC CBC HEC sing 509 n n CAC HAC HEC sing 510 n n CBC HBC1 HEC sing 511 n n CBC HBC2 HEC sing 512 n n CBC HBC3 HEC sing 513 n n ND C1D HEC sing 514 n y ND C4D HEC sing 515 n y C1D C2D HEC doub 516 n y C2D C3D HEC sing 517 n y C2D CMD HEC sing 518 n n C3D C4D HEC doub 519 n y C3D CAD HEC sing 520 n n CMD HMD1 HEC sing 521 n n CMD HMD2 HEC sing 522 n n CMD HMD3 HEC sing 523 n n CAD CBD HEC sing 524 n n CAD HAD1 HEC sing 525 n n CAD HAD2 HEC sing 526 n n CBD CGD HEC sing 527 n n CBD HBD1 HEC sing 528 n n CBD HBD2 HEC sing 529 n n CGD O1D HEC doub 530 n n CGD O2D HEC sing 531 n n O2D H2D HEC sing 532 n n # _atom_sites.entry_id 3L73 _atom_sites.fract_transf_matrix[1][1] 0.005831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2008 2008 PEE PEE . V 12 HEM C 1 501 501 HEM HEM . W 12 HEM C 1 502 502 HEM HEM . X 13 JZZ C 1 2001 2001 JZZ JZZ . Y 14 UQ C 1 2002 2002 UQ UQ . Z 11 PEE C 1 2007 2007 PEE PEE . AA 15 GOL C 1 2011 2011 GOL GOL . BA 16 HEC D 1 501 501 HEC HEC . CA 17 CDL D 1 2003 2003 CDL CDL . DA 18 BOG D 1 2009 2009 BOG BOG . EA 18 BOG D 1 2091 2091 BOG BOG . FA 19 FES E 1 501 501 FES FES . GA 11 PEE E 1 2005 2005 PEE PEE . HA 17 CDL G 1 2004 2004 CDL CDL . IA 12 HEM P 1 501 501 HEM HEM . JA 12 HEM P 1 502 502 HEM HEM . KA 18 BOG P 1 2010 2010 BOG BOG . LA 13 JZZ P 1 3001 3001 JZZ JZZ . MA 14 UQ P 1 3002 3002 UQ UQ . NA 11 PEE P 1 3007 3007 PEE PEE . OA 11 PEE P 1 3008 3008 PEE PEE . PA 15 GOL P 1 3011 3011 GOL GOL . QA 16 HEC Q 1 501 501 HEC HEC . RA 17 CDL Q 1 3003 3003 CDL CDL . SA 18 BOG Q 1 3009 3009 BOG BOG . TA 18 BOG Q 1 3091 3091 BOG BOG . UA 19 FES R 1 501 501 FES FES . VA 11 PEE R 1 3005 3005 PEE PEE . WA 17 CDL T 1 3004 3004 CDL CDL . XA 20 HOH C 1 381 2 HOH HOH . XA 20 HOH C 2 382 4 HOH HOH . XA 20 HOH C 3 383 108 HOH HOH . XA 20 HOH C 4 384 119 HOH HOH . XA 20 HOH C 5 385 168 HOH HOH . XA 20 HOH C 6 386 222 HOH HOH . XA 20 HOH C 7 1008 1008 HOH HOH . XA 20 HOH C 8 1238 1238 HOH HOH . YA 20 HOH E 1 1289 1289 HOH HOH . ZA 20 HOH P 1 381 1 HOH HOH . ZA 20 HOH P 2 382 5 HOH HOH . ZA 20 HOH P 3 383 6 HOH HOH . ZA 20 HOH P 4 384 28 HOH HOH . ZA 20 HOH P 5 385 35 HOH HOH . ZA 20 HOH P 6 386 109 HOH HOH . ZA 20 HOH P 7 387 214 HOH HOH . ZA 20 HOH P 8 959 959 HOH HOH . ZA 20 HOH P 9 1239 1239 HOH HOH . AB 20 HOH R 1 1230 1230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . QA 16 36.844 171.694 106.651 1 77.42 ? FE HEC 501 Q 1 HETATM 2 C CHA HEC . . . QA 16 39.198 170.46 104.606 1 73.26 ? CHA HEC 501 Q 1 HETATM 3 C CHB HEC . . . QA 16 37.197 169.057 108.646 1 72.06 ? CHB HEC 501 Q 1 HETATM 4 C CHC HEC . . . QA 16 34.565 172.97 108.804 1 75.17 ? CHC HEC 501 Q 1 HETATM 5 C CHD HEC . . . QA 16 36.385 174.239 104.617 1 74.61 ? CHD HEC 501 Q 1 HETATM 6 N NA HEC . . . QA 16 37.929 170.068 106.591 1 74.52 ? NA HEC 501 Q 1 HETATM 7 C C1A HEC . . . QA 16 38.9 169.711 105.685 1 73.11 ? C1A HEC 501 Q 1 HETATM 8 C C2A HEC . . . QA 16 39.647 168.535 106.156 1 72.44 ? C2A HEC 501 Q 1 HETATM 9 C C3A HEC . . . QA 16 38.943 168.06 107.182 1 72.66 ? C3A HEC 501 Q 1 HETATM 10 C C4A HEC . . . QA 16 37.946 169.065 107.518 1 72.75 ? C4A HEC 501 Q 1 HETATM 11 C CMA HEC . . . QA 16 39.267 166.756 107.886 1 72.18 ? CMA HEC 501 Q 1 HETATM 12 C CAA HEC . . . QA 16 40.989 167.943 105.827 1 71.07 ? CAA HEC 501 Q 1 HETATM 13 C CBA HEC . . . QA 16 41.357 167.901 104.367 1 74.17 ? CBA HEC 501 Q 1 HETATM 14 C CGA HEC . . . QA 16 42.61 167.088 104.13 1 77.24 ? CGA HEC 501 Q 1 HETATM 15 O O1A HEC . . . QA 16 43.06 166.979 102.957 1 76.62 ? O1A HEC 501 Q 1 HETATM 16 O O2A HEC . . . QA 16 43.144 166.55 105.132 1 79.14 ? O2A HEC 501 Q 1 HETATM 17 N NB HEC . . . QA 16 36.034 171.141 108.36 1 74.92 ? NB HEC 501 Q 1 HETATM 18 C C1B HEC . . . QA 16 36.293 169.999 109.035 1 73.13 ? C1B HEC 501 Q 1 HETATM 19 C C2B HEC . . . QA 16 35.413 169.845 110.161 1 73.6 ? C2B HEC 501 Q 1 HETATM 20 C C3B HEC . . . QA 16 34.658 170.922 110.214 1 75.1 ? C3B HEC 501 Q 1 HETATM 21 C C4B HEC . . . QA 16 35.067 171.755 109.11 1 74.82 ? C4B HEC 501 Q 1 HETATM 22 C CMB HEC . . . QA 16 35.312 168.711 111.175 1 72.01 ? CMB HEC 501 Q 1 HETATM 23 C CAB HEC . . . QA 16 33.611 171.347 111.255 1 79.08 ? CAB HEC 501 Q 1 HETATM 24 C CBB HEC . . . QA 16 34.248 171.296 112.653 1 79.17 ? CBB HEC 501 Q 1 HETATM 25 N NC HEC . . . QA 16 35.801 173.324 106.746 1 76.18 ? NC HEC 501 Q 1 HETATM 26 C C1C HEC . . . QA 16 34.907 173.703 107.705 1 75.83 ? C1C HEC 501 Q 1 HETATM 27 C C2C HEC . . . QA 16 34.106 174.787 107.24 1 77.18 ? C2C HEC 501 Q 1 HETATM 28 C C3C HEC . . . QA 16 34.61 175.141 106.065 1 78.55 ? C3C HEC 501 Q 1 HETATM 29 C C4C HEC . . . QA 16 35.675 174.247 105.772 1 75.8 ? C4C HEC 501 Q 1 HETATM 30 C CMC HEC . . . QA 16 32.777 175.3 107.8 1 76.93 ? CMC HEC 501 Q 1 HETATM 31 C CAC HEC . . . QA 16 34.114 176.124 105 1 81.97 ? CAC HEC 501 Q 1 HETATM 32 C CBC HEC . . . QA 16 34.42 177.578 105.43 1 83.23 ? CBC HEC 501 Q 1 HETATM 33 N ND HEC . . . QA 16 37.646 172.239 104.992 1 75.11 ? ND HEC 501 Q 1 HETATM 34 C C1D HEC . . . QA 16 37.331 173.34 104.271 1 74.59 ? C1D HEC 501 Q 1 HETATM 35 C C2D HEC . . . QA 16 38.23 173.519 103.17 1 74.92 ? C2D HEC 501 Q 1 HETATM 36 C C3D HEC . . . QA 16 39.035 172.433 103.175 1 75.25 ? C3D HEC 501 Q 1 HETATM 37 C C4D HEC . . . QA 16 38.644 171.646 104.299 1 74.22 ? C4D HEC 501 Q 1 HETATM 38 C CMD HEC . . . QA 16 38.255 174.683 102.174 1 73.81 ? CMD HEC 501 Q 1 HETATM 39 C CAD HEC . . . QA 16 40.055 172.081 102.108 1 76.63 ? CAD HEC 501 Q 1 HETATM 40 C CBD HEC . . . QA 16 41.476 172.36 102.531 1 80.65 ? CBD HEC 501 Q 1 HETATM 41 C CGD HEC . . . QA 16 42.481 172.013 101.443 1 83.16 ? CGD HEC 501 Q 1 HETATM 42 O O1D HEC . . . QA 16 42.411 170.879 100.916 1 84.82 ? O1D HEC 501 Q 1 HETATM 43 O O2D HEC . . . QA 16 43.342 172.864 101.117 1 83.71 ? O2D HEC 501 Q 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #