data_3L76
#
_model_server_result.job_id            t47yHZ_DsAL0MOPfeILEag 
_model_server_result.datetime_utc      '2024-11-05 00:34:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l76 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":603}' 
#
_entry.id    3L76 
#
_exptl.entry_id    3L76 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.195 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            LYSINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3L76 
_cell.length_a            86.21 
_cell.length_b            237.71 
_cell.length_c            150.08 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L76 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C6 H15 N2 O2 1' 
_chem_comp.formula_weight    147.195 
_chem_comp.id                LYS 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              LYSINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA LYS sing 194 n n 
N H LYS sing 195 n n 
N H2 LYS sing 196 n n 
CA C LYS sing 197 n n 
CA CB LYS sing 198 n n 
CA HA LYS sing 199 n n 
C O LYS doub 200 n n 
C OXT LYS sing 201 n n 
CB CG LYS sing 202 n n 
CB HB2 LYS sing 203 n n 
CB HB3 LYS sing 204 n n 
CG CD LYS sing 205 n n 
CG HG2 LYS sing 206 n n 
CG HG3 LYS sing 207 n n 
CD CE LYS sing 208 n n 
CD HD2 LYS sing 209 n n 
CD HD3 LYS sing 210 n n 
CE NZ LYS sing 211 n n 
CE HE2 LYS sing 212 n n 
CE HE3 LYS sing 213 n n 
NZ HZ1 LYS sing 214 n n 
NZ HZ2 LYS sing 215 n n 
NZ HZ3 LYS sing 216 n n 
OXT HXT LYS sing 217 n n 
#
_atom_sites.entry_id                     3L76 
_atom_sites.fract_transf_matrix[1][1]    0.0116 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004207 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006663 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 THR A 1 601 1 THR THR . 
D 2 THR A 1 602 1 THR THR . 
E 3 LYS A 1 603 1 LYS LYS . 
F 3 LYS A 1 604 1 LYS LYS . 
G 4 SO4 A 1 605 1 SO4 SO4 . 
H 2 THR B 1 601 1 THR THR . 
I 2 THR B 1 602 1 THR THR . 
J 3 LYS B 1 603 1 LYS LYS . 
K 3 LYS B 1 604 1 LYS LYS . 
L 5 HOH A 1 606 1 HOH HOH . 
L 5 HOH A 2 607 2 HOH HOH . 
L 5 HOH A 3 608 6 HOH HOH . 
L 5 HOH A 4 609 7 HOH HOH . 
L 5 HOH A 5 610 10 HOH HOH . 
L 5 HOH A 6 611 11 HOH HOH . 
L 5 HOH A 7 612 12 HOH HOH . 
L 5 HOH A 8 613 13 HOH HOH . 
L 5 HOH A 9 614 14 HOH HOH . 
L 5 HOH A 10 615 15 HOH HOH . 
L 5 HOH A 11 616 18 HOH HOH . 
L 5 HOH A 12 617 19 HOH HOH . 
L 5 HOH A 13 618 20 HOH HOH . 
L 5 HOH A 14 619 22 HOH HOH . 
L 5 HOH A 15 620 23 HOH HOH . 
L 5 HOH A 16 621 24 HOH HOH . 
L 5 HOH A 17 622 26 HOH HOH . 
L 5 HOH A 18 623 28 HOH HOH . 
L 5 HOH A 19 624 29 HOH HOH . 
L 5 HOH A 20 625 31 HOH HOH . 
L 5 HOH A 21 626 35 HOH HOH . 
L 5 HOH A 22 627 39 HOH HOH . 
L 5 HOH A 23 628 40 HOH HOH . 
L 5 HOH A 24 629 41 HOH HOH . 
L 5 HOH A 25 630 47 HOH HOH . 
L 5 HOH A 26 631 48 HOH HOH . 
L 5 HOH A 27 632 50 HOH HOH . 
L 5 HOH A 28 633 52 HOH HOH . 
L 5 HOH A 29 634 54 HOH HOH . 
L 5 HOH A 30 635 55 HOH HOH . 
L 5 HOH A 31 636 57 HOH HOH . 
L 5 HOH A 32 637 60 HOH HOH . 
L 5 HOH A 33 638 61 HOH HOH . 
L 5 HOH A 34 639 62 HOH HOH . 
L 5 HOH A 35 640 64 HOH HOH . 
L 5 HOH A 36 641 65 HOH HOH . 
L 5 HOH A 37 642 66 HOH HOH . 
L 5 HOH A 38 643 70 HOH HOH . 
L 5 HOH A 39 644 71 HOH HOH . 
L 5 HOH A 40 645 72 HOH HOH . 
L 5 HOH A 41 646 73 HOH HOH . 
L 5 HOH A 42 647 75 HOH HOH . 
L 5 HOH A 43 648 76 HOH HOH . 
L 5 HOH A 44 649 82 HOH HOH . 
L 5 HOH A 45 650 84 HOH HOH . 
L 5 HOH A 46 651 85 HOH HOH . 
L 5 HOH A 47 652 86 HOH HOH . 
L 5 HOH A 48 653 92 HOH HOH . 
L 5 HOH A 49 654 94 HOH HOH . 
L 5 HOH A 50 655 97 HOH HOH . 
L 5 HOH A 51 656 98 HOH HOH . 
L 5 HOH A 52 657 103 HOH HOH . 
L 5 HOH A 53 658 107 HOH HOH . 
L 5 HOH A 54 659 111 HOH HOH . 
L 5 HOH A 55 660 113 HOH HOH . 
L 5 HOH A 56 661 115 HOH HOH . 
L 5 HOH A 57 662 129 HOH HOH . 
L 5 HOH A 58 663 130 HOH HOH . 
L 5 HOH A 59 664 133 HOH HOH . 
L 5 HOH A 60 665 138 HOH HOH . 
L 5 HOH A 61 666 139 HOH HOH . 
L 5 HOH A 62 667 141 HOH HOH . 
L 5 HOH A 63 668 143 HOH HOH . 
L 5 HOH A 64 669 147 HOH HOH . 
L 5 HOH A 65 670 151 HOH HOH . 
L 5 HOH A 66 671 159 HOH HOH . 
L 5 HOH A 67 672 161 HOH HOH . 
L 5 HOH A 68 673 167 HOH HOH . 
L 5 HOH A 69 674 168 HOH HOH . 
L 5 HOH A 70 675 170 HOH HOH . 
L 5 HOH A 71 676 173 HOH HOH . 
L 5 HOH A 72 677 181 HOH HOH . 
L 5 HOH A 73 678 182 HOH HOH . 
L 5 HOH A 74 679 185 HOH HOH . 
L 5 HOH A 75 680 187 HOH HOH . 
L 5 HOH A 76 681 190 HOH HOH . 
L 5 HOH A 77 682 195 HOH HOH . 
L 5 HOH A 78 683 198 HOH HOH . 
L 5 HOH A 79 684 202 HOH HOH . 
L 5 HOH A 80 685 203 HOH HOH . 
L 5 HOH A 81 686 204 HOH HOH . 
L 5 HOH A 82 687 207 HOH HOH . 
L 5 HOH A 83 688 208 HOH HOH . 
L 5 HOH A 84 689 212 HOH HOH . 
L 5 HOH A 85 690 216 HOH HOH . 
L 5 HOH A 86 691 218 HOH HOH . 
L 5 HOH A 87 692 219 HOH HOH . 
L 5 HOH A 88 693 221 HOH HOH . 
L 5 HOH A 89 694 224 HOH HOH . 
L 5 HOH A 90 695 226 HOH HOH . 
L 5 HOH A 91 696 230 HOH HOH . 
L 5 HOH A 92 697 232 HOH HOH . 
L 5 HOH A 93 698 235 HOH HOH . 
L 5 HOH A 94 699 236 HOH HOH . 
L 5 HOH A 95 700 237 HOH HOH . 
L 5 HOH A 96 701 238 HOH HOH . 
L 5 HOH A 97 702 242 HOH HOH . 
L 5 HOH A 98 703 244 HOH HOH . 
L 5 HOH A 99 704 245 HOH HOH . 
L 5 HOH A 100 705 247 HOH HOH . 
L 5 HOH A 101 706 253 HOH HOH . 
M 5 HOH B 1 605 3 HOH HOH . 
M 5 HOH B 2 606 4 HOH HOH . 
M 5 HOH B 3 607 5 HOH HOH . 
M 5 HOH B 4 608 8 HOH HOH . 
M 5 HOH B 5 609 9 HOH HOH . 
M 5 HOH B 6 610 16 HOH HOH . 
M 5 HOH B 7 611 17 HOH HOH . 
M 5 HOH B 8 612 21 HOH HOH . 
M 5 HOH B 9 613 25 HOH HOH . 
M 5 HOH B 10 614 30 HOH HOH . 
M 5 HOH B 11 615 32 HOH HOH . 
M 5 HOH B 12 616 33 HOH HOH . 
M 5 HOH B 13 617 34 HOH HOH . 
M 5 HOH B 14 618 37 HOH HOH . 
M 5 HOH B 15 619 42 HOH HOH . 
M 5 HOH B 16 620 46 HOH HOH . 
M 5 HOH B 17 621 49 HOH HOH . 
M 5 HOH B 18 622 51 HOH HOH . 
M 5 HOH B 19 623 53 HOH HOH . 
M 5 HOH B 20 624 63 HOH HOH . 
M 5 HOH B 21 625 67 HOH HOH . 
M 5 HOH B 22 626 68 HOH HOH . 
M 5 HOH B 23 627 79 HOH HOH . 
M 5 HOH B 24 628 80 HOH HOH . 
M 5 HOH B 25 629 83 HOH HOH . 
M 5 HOH B 26 630 95 HOH HOH . 
M 5 HOH B 27 631 96 HOH HOH . 
M 5 HOH B 28 632 99 HOH HOH . 
M 5 HOH B 29 633 100 HOH HOH . 
M 5 HOH B 30 634 101 HOH HOH . 
M 5 HOH B 31 635 104 HOH HOH . 
M 5 HOH B 32 636 105 HOH HOH . 
M 5 HOH B 33 637 106 HOH HOH . 
M 5 HOH B 34 638 108 HOH HOH . 
M 5 HOH B 35 639 109 HOH HOH . 
M 5 HOH B 36 640 110 HOH HOH . 
M 5 HOH B 37 641 121 HOH HOH . 
M 5 HOH B 38 642 122 HOH HOH . 
M 5 HOH B 39 643 125 HOH HOH . 
M 5 HOH B 40 644 127 HOH HOH . 
M 5 HOH B 41 645 128 HOH HOH . 
M 5 HOH B 42 646 131 HOH HOH . 
M 5 HOH B 43 647 132 HOH HOH . 
M 5 HOH B 44 648 134 HOH HOH . 
M 5 HOH B 45 649 137 HOH HOH . 
M 5 HOH B 46 650 140 HOH HOH . 
M 5 HOH B 47 651 142 HOH HOH . 
M 5 HOH B 48 652 145 HOH HOH . 
M 5 HOH B 49 653 148 HOH HOH . 
M 5 HOH B 50 654 149 HOH HOH . 
M 5 HOH B 51 655 153 HOH HOH . 
M 5 HOH B 52 656 160 HOH HOH . 
M 5 HOH B 53 657 163 HOH HOH . 
M 5 HOH B 54 658 171 HOH HOH . 
M 5 HOH B 55 659 180 HOH HOH . 
M 5 HOH B 56 660 183 HOH HOH . 
M 5 HOH B 57 661 196 HOH HOH . 
M 5 HOH B 58 662 199 HOH HOH . 
M 5 HOH B 59 663 200 HOH HOH . 
M 5 HOH B 60 664 205 HOH HOH . 
M 5 HOH B 61 665 210 HOH HOH . 
M 5 HOH B 62 666 211 HOH HOH . 
M 5 HOH B 63 667 215 HOH HOH . 
M 5 HOH B 64 668 220 HOH HOH . 
M 5 HOH B 65 669 222 HOH HOH . 
M 5 HOH B 66 670 225 HOH HOH . 
M 5 HOH B 67 671 229 HOH HOH . 
M 5 HOH B 68 672 231 HOH HOH . 
M 5 HOH B 69 673 234 HOH HOH . 
M 5 HOH B 70 674 243 HOH HOH . 
M 5 HOH B 71 675 246 HOH HOH . 
M 5 HOH B 72 676 248 HOH HOH . 
M 5 HOH B 73 677 249 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N LYS . . . J 3 40.154 6.378 59.556 1 40.13 ? N LYS 603 B 1 
HETATM 2 C CA LYS . . . J 3 39.306 6.475 60.732 1 36.74 ? CA LYS 603 B 1 
HETATM 3 C C LYS . . . J 3 38.939 5.076 61.213 1 62.19 ? C LYS 603 B 1 
HETATM 4 O O LYS . . . J 3 39.522 4.105 60.729 1 38.46 ? O LYS 603 B 1 
HETATM 5 C CB LYS . . . J 3 38.034 7.244 60.405 1 23.12 ? CB LYS 603 B 1 
HETATM 6 C CG LYS . . . J 3 37.191 6.584 59.32 1 26.62 ? CG LYS 603 B 1 
HETATM 7 C CD LYS . . . J 3 35.855 7.318 59.157 1 21.59 ? CD LYS 603 B 1 
HETATM 8 C CE LYS . . . J 3 36.076 8.723 58.622 1 36.75 ? CE LYS 603 B 1 
HETATM 9 N NZ LYS . . . J 3 36.754 8.772 57.282 1 30.79 ? NZ LYS 603 B 1 
HETATM 10 O OXT LYS . . . J 3 38.056 4.905 62.067 1 49.06 ? OXT LYS 603 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#