data_3L77
#
_model_server_result.job_id            JnAi1ScmSIIS2qcQIpNdiQ 
_model_server_result.datetime_utc      '2024-11-17 05:48:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l77 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":247}' 
#
_entry.id    3L77 
#
_exptl.entry_id    3L77 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3L77 
_cell.length_a            55.62 
_cell.length_b            83.23 
_cell.length_c            120.75 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L77 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -55.62 0 0 
3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -55.62 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 E N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 211 A CYS 210 1_555 A SG CYS 211 A CYS 210 2_455 ? B ? ? B ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf2 A SG CYS 211 A CYS 210 1_555 A SG CYS 211 A CYS 210 2_455 ? A ? ? A ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     3L77 
_atom_sites.fract_transf_matrix[1][1]    0.017979 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008282 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NJP A 1 501 501 NJP NJP . 
C 3 GOL A 1 242 242 GOL GOL . 
D 4 PG4 A 1 241 241 PG4 PG4 . 
E 3 GOL A 1 243 243 GOL GOL . 
F 4 PG4 A 1 245 245 PG4 PG4 . 
G 5 EDO A 1 244 244 EDO EDO . 
H 3 GOL A 1 246 246 GOL GOL . 
I 3 GOL A 1 247 247 GOL GOL . 
J 3 GOL A 1 248 248 GOL GOL . 
K 5 EDO A 1 249 249 EDO EDO . 
L 5 EDO A 1 250 250 EDO EDO . 
M 4 PG4 A 1 251 251 PG4 PG4 . 
N 6 HOH A 1 252 252 HOH HOH . 
N 6 HOH A 2 253 253 HOH HOH . 
N 6 HOH A 3 254 254 HOH HOH . 
N 6 HOH A 4 255 255 HOH HOH . 
N 6 HOH A 5 256 256 HOH HOH . 
N 6 HOH A 6 257 257 HOH HOH . 
N 6 HOH A 7 258 258 HOH HOH . 
N 6 HOH A 8 259 259 HOH HOH . 
N 6 HOH A 9 260 260 HOH HOH . 
N 6 HOH A 10 261 261 HOH HOH . 
N 6 HOH A 11 262 262 HOH HOH . 
N 6 HOH A 12 263 263 HOH HOH . 
N 6 HOH A 13 264 264 HOH HOH . 
N 6 HOH A 14 265 265 HOH HOH . 
N 6 HOH A 15 266 266 HOH HOH . 
N 6 HOH A 16 267 267 HOH HOH . 
N 6 HOH A 17 268 268 HOH HOH . 
N 6 HOH A 18 269 269 HOH HOH . 
N 6 HOH A 19 270 270 HOH HOH . 
N 6 HOH A 20 271 271 HOH HOH . 
N 6 HOH A 21 272 272 HOH HOH . 
N 6 HOH A 22 273 273 HOH HOH . 
N 6 HOH A 23 274 274 HOH HOH . 
N 6 HOH A 24 275 275 HOH HOH . 
N 6 HOH A 25 276 276 HOH HOH . 
N 6 HOH A 26 277 277 HOH HOH . 
N 6 HOH A 27 278 278 HOH HOH . 
N 6 HOH A 28 279 279 HOH HOH . 
N 6 HOH A 29 280 280 HOH HOH . 
N 6 HOH A 30 281 281 HOH HOH . 
N 6 HOH A 31 282 282 HOH HOH . 
N 6 HOH A 32 283 283 HOH HOH . 
N 6 HOH A 33 284 284 HOH HOH . 
N 6 HOH A 34 285 285 HOH HOH . 
N 6 HOH A 35 286 286 HOH HOH . 
N 6 HOH A 36 287 287 HOH HOH . 
N 6 HOH A 37 288 288 HOH HOH . 
N 6 HOH A 38 289 289 HOH HOH . 
N 6 HOH A 39 290 290 HOH HOH . 
N 6 HOH A 40 291 291 HOH HOH . 
N 6 HOH A 41 292 292 HOH HOH . 
N 6 HOH A 42 293 293 HOH HOH . 
N 6 HOH A 43 294 294 HOH HOH . 
N 6 HOH A 44 295 295 HOH HOH . 
N 6 HOH A 45 296 296 HOH HOH . 
N 6 HOH A 46 297 297 HOH HOH . 
N 6 HOH A 47 298 298 HOH HOH . 
N 6 HOH A 48 299 299 HOH HOH . 
N 6 HOH A 49 300 300 HOH HOH . 
N 6 HOH A 50 301 301 HOH HOH . 
N 6 HOH A 51 302 302 HOH HOH . 
N 6 HOH A 52 303 303 HOH HOH . 
N 6 HOH A 53 304 304 HOH HOH . 
N 6 HOH A 54 305 305 HOH HOH . 
N 6 HOH A 55 306 306 HOH HOH . 
N 6 HOH A 56 307 307 HOH HOH . 
N 6 HOH A 57 308 308 HOH HOH . 
N 6 HOH A 58 309 309 HOH HOH . 
N 6 HOH A 59 310 310 HOH HOH . 
N 6 HOH A 60 311 311 HOH HOH . 
N 6 HOH A 61 312 312 HOH HOH . 
N 6 HOH A 62 313 313 HOH HOH . 
N 6 HOH A 63 314 314 HOH HOH . 
N 6 HOH A 64 315 315 HOH HOH . 
N 6 HOH A 65 316 316 HOH HOH . 
N 6 HOH A 66 317 317 HOH HOH . 
N 6 HOH A 67 318 318 HOH HOH . 
N 6 HOH A 68 319 319 HOH HOH . 
N 6 HOH A 69 320 320 HOH HOH . 
N 6 HOH A 70 321 321 HOH HOH . 
N 6 HOH A 71 322 322 HOH HOH . 
N 6 HOH A 72 323 323 HOH HOH . 
N 6 HOH A 73 324 324 HOH HOH . 
N 6 HOH A 74 325 325 HOH HOH . 
N 6 HOH A 75 326 326 HOH HOH . 
N 6 HOH A 76 327 327 HOH HOH . 
N 6 HOH A 77 328 328 HOH HOH . 
N 6 HOH A 78 329 329 HOH HOH . 
N 6 HOH A 79 330 330 HOH HOH . 
N 6 HOH A 80 331 331 HOH HOH . 
N 6 HOH A 81 332 332 HOH HOH . 
N 6 HOH A 82 333 333 HOH HOH . 
N 6 HOH A 83 334 334 HOH HOH . 
N 6 HOH A 84 335 335 HOH HOH . 
N 6 HOH A 85 336 336 HOH HOH . 
N 6 HOH A 86 337 337 HOH HOH . 
N 6 HOH A 87 338 338 HOH HOH . 
N 6 HOH A 88 339 339 HOH HOH . 
N 6 HOH A 89 340 340 HOH HOH . 
N 6 HOH A 90 341 341 HOH HOH . 
N 6 HOH A 91 342 342 HOH HOH . 
N 6 HOH A 92 343 343 HOH HOH . 
N 6 HOH A 93 344 344 HOH HOH . 
N 6 HOH A 94 345 345 HOH HOH . 
N 6 HOH A 95 346 346 HOH HOH . 
N 6 HOH A 96 347 347 HOH HOH . 
N 6 HOH A 97 348 348 HOH HOH . 
N 6 HOH A 98 349 349 HOH HOH . 
N 6 HOH A 99 350 350 HOH HOH . 
N 6 HOH A 100 351 351 HOH HOH . 
N 6 HOH A 101 352 352 HOH HOH . 
N 6 HOH A 102 353 353 HOH HOH . 
N 6 HOH A 103 354 354 HOH HOH . 
N 6 HOH A 104 355 355 HOH HOH . 
N 6 HOH A 105 356 356 HOH HOH . 
N 6 HOH A 106 357 357 HOH HOH . 
N 6 HOH A 107 358 358 HOH HOH . 
N 6 HOH A 108 359 359 HOH HOH . 
N 6 HOH A 109 360 360 HOH HOH . 
N 6 HOH A 110 361 361 HOH HOH . 
N 6 HOH A 111 362 362 HOH HOH . 
N 6 HOH A 112 363 363 HOH HOH . 
N 6 HOH A 113 364 364 HOH HOH . 
N 6 HOH A 114 365 365 HOH HOH . 
N 6 HOH A 115 366 366 HOH HOH . 
N 6 HOH A 116 367 367 HOH HOH . 
N 6 HOH A 117 368 368 HOH HOH . 
N 6 HOH A 118 369 369 HOH HOH . 
N 6 HOH A 119 370 370 HOH HOH . 
N 6 HOH A 120 371 371 HOH HOH . 
N 6 HOH A 121 372 372 HOH HOH . 
N 6 HOH A 122 373 373 HOH HOH . 
N 6 HOH A 123 374 374 HOH HOH . 
N 6 HOH A 124 375 375 HOH HOH . 
N 6 HOH A 125 376 376 HOH HOH . 
N 6 HOH A 126 377 377 HOH HOH . 
N 6 HOH A 127 378 378 HOH HOH . 
N 6 HOH A 128 379 379 HOH HOH . 
N 6 HOH A 129 380 380 HOH HOH . 
N 6 HOH A 130 381 381 HOH HOH . 
N 6 HOH A 131 382 382 HOH HOH . 
N 6 HOH A 132 383 383 HOH HOH . 
N 6 HOH A 133 384 384 HOH HOH . 
N 6 HOH A 134 385 385 HOH HOH . 
N 6 HOH A 135 386 386 HOH HOH . 
N 6 HOH A 136 387 387 HOH HOH . 
N 6 HOH A 137 388 388 HOH HOH . 
N 6 HOH A 138 389 389 HOH HOH . 
N 6 HOH A 139 390 390 HOH HOH . 
N 6 HOH A 140 391 391 HOH HOH . 
N 6 HOH A 141 392 392 HOH HOH . 
N 6 HOH A 142 393 393 HOH HOH . 
N 6 HOH A 143 394 394 HOH HOH . 
N 6 HOH A 144 395 395 HOH HOH . 
N 6 HOH A 145 396 396 HOH HOH . 
N 6 HOH A 146 397 397 HOH HOH . 
N 6 HOH A 147 398 398 HOH HOH . 
N 6 HOH A 148 399 399 HOH HOH . 
N 6 HOH A 149 400 400 HOH HOH . 
N 6 HOH A 150 401 401 HOH HOH . 
N 6 HOH A 151 402 402 HOH HOH . 
N 6 HOH A 152 403 403 HOH HOH . 
N 6 HOH A 153 404 404 HOH HOH . 
N 6 HOH A 154 405 405 HOH HOH . 
N 6 HOH A 155 406 406 HOH HOH . 
N 6 HOH A 156 407 407 HOH HOH . 
N 6 HOH A 157 408 408 HOH HOH . 
N 6 HOH A 158 409 409 HOH HOH . 
N 6 HOH A 159 410 410 HOH HOH . 
N 6 HOH A 160 411 411 HOH HOH . 
N 6 HOH A 161 412 412 HOH HOH . 
N 6 HOH A 162 413 413 HOH HOH . 
N 6 HOH A 163 414 414 HOH HOH . 
N 6 HOH A 164 415 415 HOH HOH . 
N 6 HOH A 165 416 416 HOH HOH . 
N 6 HOH A 166 417 417 HOH HOH . 
N 6 HOH A 167 418 418 HOH HOH . 
N 6 HOH A 168 419 419 HOH HOH . 
N 6 HOH A 169 420 420 HOH HOH . 
N 6 HOH A 170 421 421 HOH HOH . 
N 6 HOH A 171 422 422 HOH HOH . 
N 6 HOH A 172 423 423 HOH HOH . 
N 6 HOH A 173 424 424 HOH HOH . 
N 6 HOH A 174 425 425 HOH HOH . 
N 6 HOH A 175 426 426 HOH HOH . 
N 6 HOH A 176 427 427 HOH HOH . 
N 6 HOH A 177 428 428 HOH HOH . 
N 6 HOH A 178 429 429 HOH HOH . 
N 6 HOH A 179 430 430 HOH HOH . 
N 6 HOH A 180 431 431 HOH HOH . 
N 6 HOH A 181 432 432 HOH HOH . 
N 6 HOH A 182 433 433 HOH HOH . 
N 6 HOH A 183 434 434 HOH HOH . 
N 6 HOH A 184 435 435 HOH HOH . 
N 6 HOH A 185 436 436 HOH HOH . 
N 6 HOH A 186 437 437 HOH HOH . 
N 6 HOH A 187 438 438 HOH HOH . 
N 6 HOH A 188 439 439 HOH HOH . 
N 6 HOH A 189 440 440 HOH HOH . 
N 6 HOH A 190 441 441 HOH HOH . 
N 6 HOH A 191 442 442 HOH HOH . 
N 6 HOH A 192 443 443 HOH HOH . 
N 6 HOH A 193 444 444 HOH HOH . 
N 6 HOH A 194 445 445 HOH HOH . 
N 6 HOH A 195 446 446 HOH HOH . 
N 6 HOH A 196 447 447 HOH HOH . 
N 6 HOH A 197 448 448 HOH HOH . 
N 6 HOH A 198 449 449 HOH HOH . 
N 6 HOH A 199 450 450 HOH HOH . 
N 6 HOH A 200 451 451 HOH HOH . 
N 6 HOH A 201 452 452 HOH HOH . 
N 6 HOH A 202 453 453 HOH HOH . 
N 6 HOH A 203 454 454 HOH HOH . 
N 6 HOH A 204 455 455 HOH HOH . 
N 6 HOH A 205 456 456 HOH HOH . 
N 6 HOH A 206 457 457 HOH HOH . 
N 6 HOH A 207 458 458 HOH HOH . 
N 6 HOH A 208 459 459 HOH HOH . 
N 6 HOH A 209 460 460 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 -3.986 -22.978 -14.848 1 64.24 ? C1 GOL 247 A 1 
HETATM 2 O O1 GOL . . . I 3 -3.117 -23.94 -15.402 1 64.42 ? O1 GOL 247 A 1 
HETATM 3 C C2 GOL . . . I 3 -3.973 -21.72 -15.708 1 64.14 ? C2 GOL 247 A 1 
HETATM 4 O O2 GOL . . . I 3 -5.283 -21.435 -16.142 1 64.92 ? O2 GOL 247 A 1 
HETATM 5 C C3 GOL . . . I 3 -3.441 -20.541 -14.901 1 63.86 ? C3 GOL 247 A 1 
HETATM 6 O O3 GOL . . . I 3 -3.722 -19.339 -15.583 1 63.2 ? O3 GOL 247 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#