data_3L8F
#
_model_server_result.job_id            BlUeNhBN0LxzzyVdT4lScg 
_model_server_result.datetime_utc      '2024-10-12 19:22:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    3L8F 
#
_exptl.entry_id    3L8F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3L8F 
_cell.length_a            64.476 
_cell.length_b            50.002 
_cell.length_c            51.884 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 38 A ALA 38 1_555 A N MSE 39 A MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 A C MSE 39 A MSE 39 1_555 A N ARG 40 A ARG 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 A C LYS 44 A LYS 44 1_555 A N MSE 45 A MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale4 A C MSE 45 A MSE 45 1_555 A N GLY 46 A GLY 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale5 A C TRP 74 A TRP 74 1_555 A N MSE 75 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 A C MSE 75 A MSE 75 1_555 A N ASP 76 A ASP 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale7 A C GLY 115 A GLY 115 1_555 A N MSE 116 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale8 A C MSE 116 A MSE 116 1_555 A N LEU 117 A LEU 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale9 A C ASP 127 A ASP 127 1_555 A N MSE 128 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 A C MSE 128 A MSE 128 1_555 A N ALA 129 A ALA 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale11 A C TYR 132 A TYR 132 1_555 A N MSE 133 A MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale12 A C MSE 133 A MSE 133 1_555 A N VAL 134 A VAL 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale13 A C ASP 140 A ASP 140 1_555 A N MSE 141 A MSE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
covale ? covale14 A C MSE 141 A MSE 141 1_555 A N GLN 142 A GLN 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
metalc ? metalc1 B MG MG . A MG 401 1_555 D O2 PO4 . A PO4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc2 A OD2 ASP 11 A ASP 11 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc3 A ND1 HIS 94 A HIS 94 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc4 A SG CYS 109 A CYS 109 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc5 A SG CYS 92 A CYS 92 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc6 A O ASP 13 A ASP 13 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc7 A OD1 ASP 136 A ASP 136 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc8 A SG CYS 107 A CYS 107 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc9 B MG MG . A MG 401 1_555 E O HOH . A HOH 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3L8F 
_atom_sites.fract_transf_matrix[1][1]    0.01551 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019999 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019274 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 401 MG MG . 
C 3 ZN A 1 501 501 ZN ZN . 
D 4 PO4 A 1 601 601 PO4 PO4 . 
E 5 HOH A 1 188 2 HOH HOH . 
E 5 HOH A 2 189 3 HOH HOH . 
E 5 HOH A 3 190 4 HOH HOH . 
E 5 HOH A 4 191 5 HOH HOH . 
E 5 HOH A 5 192 6 HOH HOH . 
E 5 HOH A 6 193 7 HOH HOH . 
E 5 HOH A 7 194 8 HOH HOH . 
E 5 HOH A 8 195 9 HOH HOH . 
E 5 HOH A 9 196 10 HOH HOH . 
E 5 HOH A 10 197 11 HOH HOH . 
E 5 HOH A 11 198 12 HOH HOH . 
E 5 HOH A 12 199 13 HOH HOH . 
E 5 HOH A 13 200 14 HOH HOH . 
E 5 HOH A 14 201 15 HOH HOH . 
E 5 HOH A 15 202 16 HOH HOH . 
E 5 HOH A 16 203 17 HOH HOH . 
E 5 HOH A 17 204 18 HOH HOH . 
E 5 HOH A 18 205 19 HOH HOH . 
E 5 HOH A 19 206 20 HOH HOH . 
E 5 HOH A 20 207 21 HOH HOH . 
E 5 HOH A 21 208 22 HOH HOH . 
E 5 HOH A 22 209 23 HOH HOH . 
E 5 HOH A 23 210 24 HOH HOH . 
E 5 HOH A 24 211 25 HOH HOH . 
E 5 HOH A 25 212 26 HOH HOH . 
E 5 HOH A 26 213 27 HOH HOH . 
E 5 HOH A 27 214 28 HOH HOH . 
E 5 HOH A 28 215 29 HOH HOH . 
E 5 HOH A 29 216 30 HOH HOH . 
E 5 HOH A 30 217 31 HOH HOH . 
E 5 HOH A 31 218 32 HOH HOH . 
E 5 HOH A 32 219 33 HOH HOH . 
E 5 HOH A 33 220 34 HOH HOH . 
E 5 HOH A 34 221 35 HOH HOH . 
E 5 HOH A 35 222 36 HOH HOH . 
E 5 HOH A 36 223 37 HOH HOH . 
E 5 HOH A 37 224 38 HOH HOH . 
E 5 HOH A 38 225 39 HOH HOH . 
E 5 HOH A 39 226 40 HOH HOH . 
E 5 HOH A 40 227 41 HOH HOH . 
E 5 HOH A 41 228 42 HOH HOH . 
E 5 HOH A 42 229 43 HOH HOH . 
E 5 HOH A 43 230 44 HOH HOH . 
E 5 HOH A 44 231 45 HOH HOH . 
E 5 HOH A 45 232 46 HOH HOH . 
E 5 HOH A 46 233 47 HOH HOH . 
E 5 HOH A 47 234 48 HOH HOH . 
E 5 HOH A 48 235 49 HOH HOH . 
E 5 HOH A 49 236 50 HOH HOH . 
E 5 HOH A 50 237 51 HOH HOH . 
E 5 HOH A 51 238 52 HOH HOH . 
E 5 HOH A 52 239 53 HOH HOH . 
E 5 HOH A 53 240 54 HOH HOH . 
E 5 HOH A 54 241 55 HOH HOH . 
E 5 HOH A 55 242 56 HOH HOH . 
E 5 HOH A 56 243 57 HOH HOH . 
E 5 HOH A 57 244 58 HOH HOH . 
E 5 HOH A 58 245 59 HOH HOH . 
E 5 HOH A 59 246 60 HOH HOH . 
E 5 HOH A 60 247 61 HOH HOH . 
E 5 HOH A 61 248 62 HOH HOH . 
E 5 HOH A 62 249 63 HOH HOH . 
E 5 HOH A 63 250 64 HOH HOH . 
E 5 HOH A 64 251 65 HOH HOH . 
E 5 HOH A 65 252 67 HOH HOH . 
E 5 HOH A 66 253 68 HOH HOH . 
E 5 HOH A 67 254 69 HOH HOH . 
E 5 HOH A 68 255 70 HOH HOH . 
E 5 HOH A 69 256 71 HOH HOH . 
E 5 HOH A 70 257 72 HOH HOH . 
E 5 HOH A 71 258 73 HOH HOH . 
E 5 HOH A 72 259 74 HOH HOH . 
E 5 HOH A 73 260 75 HOH HOH . 
E 5 HOH A 74 261 77 HOH HOH . 
E 5 HOH A 75 262 79 HOH HOH . 
E 5 HOH A 76 263 80 HOH HOH . 
E 5 HOH A 77 264 81 HOH HOH . 
E 5 HOH A 78 265 82 HOH HOH . 
E 5 HOH A 79 266 84 HOH HOH . 
E 5 HOH A 80 267 85 HOH HOH . 
E 5 HOH A 81 268 86 HOH HOH . 
E 5 HOH A 82 269 87 HOH HOH . 
E 5 HOH A 83 270 88 HOH HOH . 
E 5 HOH A 84 271 89 HOH HOH . 
E 5 HOH A 85 272 90 HOH HOH . 
E 5 HOH A 86 273 91 HOH HOH . 
E 5 HOH A 87 274 92 HOH HOH . 
E 5 HOH A 88 275 93 HOH HOH . 
E 5 HOH A 89 276 94 HOH HOH . 
E 5 HOH A 90 277 95 HOH HOH . 
E 5 HOH A 91 278 96 HOH HOH . 
E 5 HOH A 92 279 97 HOH HOH . 
E 5 HOH A 93 280 98 HOH HOH . 
E 5 HOH A 94 281 99 HOH HOH . 
E 5 HOH A 95 282 100 HOH HOH . 
E 5 HOH A 96 283 101 HOH HOH . 
E 5 HOH A 97 284 102 HOH HOH . 
E 5 HOH A 98 285 103 HOH HOH . 
E 5 HOH A 99 286 104 HOH HOH . 
E 5 HOH A 100 287 105 HOH HOH . 
E 5 HOH A 101 288 106 HOH HOH . 
E 5 HOH A 102 289 107 HOH HOH . 
E 5 HOH A 103 290 108 HOH HOH . 
E 5 HOH A 104 291 109 HOH HOH . 
E 5 HOH A 105 292 110 HOH HOH . 
E 5 HOH A 106 293 111 HOH HOH . 
E 5 HOH A 107 294 112 HOH HOH . 
E 5 HOH A 108 295 113 HOH HOH . 
E 5 HOH A 109 296 114 HOH HOH . 
E 5 HOH A 110 297 1 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -3.646 
_atom_site.Cartn_y               15.329 
_atom_site.Cartn_z               -0.792 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.59 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#