data_3L8G # _model_server_result.job_id zezQ2i_RFUMu6KvvN1X4WQ _model_server_result.datetime_utc '2024-10-12 19:23:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":190}' # _entry.id 3L8G # _exptl.entry_id 3L8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L8G _cell.length_a 63.669 _cell.length_b 51.572 _cell.length_c 52.185 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 38 A ALA 38 1_555 A N MSE 39 A MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A C MSE 39 A MSE 39 1_555 A N ARG 40 A ARG 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C LYS 44 A LYS 44 1_555 A N MSE 45 A MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 45 A MSE 45 1_555 A N GLY 46 A GLY 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C TRP 74 A TRP 74 1_555 A N MSE 75 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 75 A MSE 75 1_555 A N ASP 76 A ASP 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 A C GLY 115 A GLY 115 1_555 A N MSE 116 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 116 A MSE 116 1_555 A N LEU 117 A LEU 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 A C ASP 127 A ASP 127 1_555 A N MSE 128 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C MSE 128 A MSE 128 1_555 A N ALA 129 A ALA 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 A C TYR 132 A TYR 132 1_555 A N MSE 133 A MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C MSE 133 A MSE 133 1_555 A N VAL 134 A VAL 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 A C ASP 140 A ASP 140 1_555 A N MSE 141 A MSE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 A C MSE 141 A MSE 141 1_555 A N GLN 142 A GLN 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD2 ASP 11 A ASP 11 1_555 B MG MG . A MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 A OD1 ASP 11 A ASP 11 1_555 B MG MG . A MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc3 A O ASP 13 A ASP 13 1_555 B MG MG . A MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 A OH TYR 22 A TYR 22 1_555 D NA NA . A NA 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc5 A SG CYS 92 A CYS 92 1_555 C ZN ZN . A ZN 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc6 A ND1 HIS 94 A HIS 94 1_555 C ZN ZN . A ZN 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc7 A SG CYS 107 A CYS 107 1_555 C ZN ZN . A ZN 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc8 A SG CYS 109 A CYS 109 1_555 C ZN ZN . A ZN 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc9 A OD1 ASP 136 A ASP 136 1_555 B MG MG . A MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc10 B MG MG . A MG 188 1_555 F O HOH . A HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc11 B MG MG . A MG 188 1_555 F O HOH . A HOH 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc12 B MG MG . A MG 188 1_555 E OP4 GMB . A GMB 3523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3L8G _atom_sites.fract_transf_matrix[1][1] 0.015706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 188 187 MG MG . C 3 ZN A 1 189 188 ZN ZN . D 4 NA A 1 190 189 NA NA . E 5 GMB A 1 3523 3523 GMB GMB . F 6 HOH A 1 191 1 HOH HOH . F 6 HOH A 2 192 2 HOH HOH . F 6 HOH A 3 193 3 HOH HOH . F 6 HOH A 4 194 4 HOH HOH . F 6 HOH A 5 195 5 HOH HOH . F 6 HOH A 6 196 6 HOH HOH . F 6 HOH A 7 197 7 HOH HOH . F 6 HOH A 8 198 8 HOH HOH . F 6 HOH A 9 199 9 HOH HOH . F 6 HOH A 10 200 10 HOH HOH . F 6 HOH A 11 201 11 HOH HOH . F 6 HOH A 12 202 12 HOH HOH . F 6 HOH A 13 203 13 HOH HOH . F 6 HOH A 14 204 14 HOH HOH . F 6 HOH A 15 205 15 HOH HOH . F 6 HOH A 16 206 16 HOH HOH . F 6 HOH A 17 207 17 HOH HOH . F 6 HOH A 18 208 18 HOH HOH . F 6 HOH A 19 209 19 HOH HOH . F 6 HOH A 20 210 20 HOH HOH . F 6 HOH A 21 211 21 HOH HOH . F 6 HOH A 22 212 22 HOH HOH . F 6 HOH A 23 213 23 HOH HOH . F 6 HOH A 24 214 24 HOH HOH . F 6 HOH A 25 215 25 HOH HOH . F 6 HOH A 26 216 26 HOH HOH . F 6 HOH A 27 217 27 HOH HOH . F 6 HOH A 28 218 28 HOH HOH . F 6 HOH A 29 219 29 HOH HOH . F 6 HOH A 30 220 30 HOH HOH . F 6 HOH A 31 221 31 HOH HOH . F 6 HOH A 32 222 32 HOH HOH . F 6 HOH A 33 223 33 HOH HOH . F 6 HOH A 34 224 34 HOH HOH . F 6 HOH A 35 225 35 HOH HOH . F 6 HOH A 36 226 36 HOH HOH . F 6 HOH A 37 227 37 HOH HOH . F 6 HOH A 38 228 38 HOH HOH . F 6 HOH A 39 229 39 HOH HOH . F 6 HOH A 40 230 40 HOH HOH . F 6 HOH A 41 231 41 HOH HOH . F 6 HOH A 42 232 42 HOH HOH . F 6 HOH A 43 233 43 HOH HOH . F 6 HOH A 44 234 44 HOH HOH . F 6 HOH A 45 235 45 HOH HOH . F 6 HOH A 46 236 46 HOH HOH . F 6 HOH A 47 237 47 HOH HOH . F 6 HOH A 48 238 48 HOH HOH . F 6 HOH A 49 239 49 HOH HOH . F 6 HOH A 50 240 50 HOH HOH . F 6 HOH A 51 241 51 HOH HOH . F 6 HOH A 52 242 52 HOH HOH . F 6 HOH A 53 243 53 HOH HOH . F 6 HOH A 54 244 54 HOH HOH . F 6 HOH A 55 245 55 HOH HOH . F 6 HOH A 56 246 56 HOH HOH . F 6 HOH A 57 247 57 HOH HOH . F 6 HOH A 58 248 58 HOH HOH . F 6 HOH A 59 249 59 HOH HOH . F 6 HOH A 60 250 60 HOH HOH . F 6 HOH A 61 251 61 HOH HOH . F 6 HOH A 62 252 62 HOH HOH . F 6 HOH A 63 253 63 HOH HOH . F 6 HOH A 64 254 64 HOH HOH . F 6 HOH A 65 255 65 HOH HOH . F 6 HOH A 66 256 66 HOH HOH . F 6 HOH A 67 257 67 HOH HOH . F 6 HOH A 68 258 68 HOH HOH . F 6 HOH A 69 259 69 HOH HOH . F 6 HOH A 70 260 70 HOH HOH . F 6 HOH A 71 261 71 HOH HOH . F 6 HOH A 72 262 72 HOH HOH . F 6 HOH A 73 263 73 HOH HOH . F 6 HOH A 74 264 74 HOH HOH . F 6 HOH A 75 265 75 HOH HOH . F 6 HOH A 76 266 76 HOH HOH . F 6 HOH A 77 267 77 HOH HOH . F 6 HOH A 78 268 78 HOH HOH . F 6 HOH A 79 269 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -11.244 _atom_site.Cartn_y 0.321 _atom_site.Cartn_z -27.636 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 190 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #