data_3L8K # _model_server_result.job_id KRByo4VXb-xy5seBznFXtQ _model_server_result.datetime_utc '2024-11-23 23:00:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":466}' # _entry.id 3L8K # _exptl.entry_id 3L8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L8K _cell.length_a 114.186 _cell.length_b 126.737 _cell.length_c 165.993 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_655 -x+1,-y+1/2,z -1 0 0 0 -1 0 0 0 1 114.186 63.3685 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 304 n n P O2 PO4 sing 305 n n P O3 PO4 sing 306 n n P O4 PO4 sing 307 n n # _atom_sites.entry_id 3L8K _atom_sites.fract_transf_matrix[1][1] 0.008758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 465 1 ADP ADP . D 3 PO4 A 1 466 2 PO4 PO4 . E 2 ADP B 1 465 1 ADP ADP . F 3 PO4 B 1 466 1 PO4 PO4 . G 4 HOH A 1 467 1 HOH HOH . G 4 HOH A 2 468 4 HOH HOH . G 4 HOH A 3 469 13 HOH HOH . G 4 HOH A 4 470 14 HOH HOH . G 4 HOH A 5 471 30 HOH HOH . G 4 HOH A 6 472 35 HOH HOH . G 4 HOH A 7 473 48 HOH HOH . G 4 HOH A 8 474 60 HOH HOH . G 4 HOH A 9 475 62 HOH HOH . G 4 HOH A 10 476 67 HOH HOH . G 4 HOH A 11 477 86 HOH HOH . G 4 HOH A 12 478 110 HOH HOH . G 4 HOH A 13 479 113 HOH HOH . G 4 HOH A 14 480 114 HOH HOH . G 4 HOH A 15 481 122 HOH HOH . G 4 HOH A 16 482 128 HOH HOH . G 4 HOH A 17 483 429 HOH HOH . G 4 HOH A 18 484 431 HOH HOH . G 4 HOH A 19 485 433 HOH HOH . G 4 HOH A 20 486 434 HOH HOH . G 4 HOH A 21 487 436 HOH HOH . G 4 HOH A 22 488 438 HOH HOH . G 4 HOH A 23 489 439 HOH HOH . H 4 HOH B 1 467 2 HOH HOH . H 4 HOH B 2 468 3 HOH HOH . H 4 HOH B 3 469 5 HOH HOH . H 4 HOH B 4 470 6 HOH HOH . H 4 HOH B 5 471 7 HOH HOH . H 4 HOH B 6 472 8 HOH HOH . H 4 HOH B 7 473 10 HOH HOH . H 4 HOH B 8 474 11 HOH HOH . H 4 HOH B 9 475 16 HOH HOH . H 4 HOH B 10 476 19 HOH HOH . H 4 HOH B 11 477 33 HOH HOH . H 4 HOH B 12 478 40 HOH HOH . H 4 HOH B 13 479 43 HOH HOH . H 4 HOH B 14 480 46 HOH HOH . H 4 HOH B 15 481 47 HOH HOH . H 4 HOH B 16 482 52 HOH HOH . H 4 HOH B 17 483 65 HOH HOH . H 4 HOH B 18 484 75 HOH HOH . H 4 HOH B 19 485 78 HOH HOH . H 4 HOH B 20 486 88 HOH HOH . H 4 HOH B 21 487 123 HOH HOH . H 4 HOH B 22 488 144 HOH HOH . H 4 HOH B 23 489 159 HOH HOH . H 4 HOH B 24 490 194 HOH HOH . H 4 HOH B 25 491 264 HOH HOH . H 4 HOH B 26 492 427 HOH HOH . H 4 HOH B 27 493 428 HOH HOH . H 4 HOH B 28 494 430 HOH HOH . H 4 HOH B 29 495 432 HOH HOH . H 4 HOH B 30 496 435 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 20.284 45.928 17.601 1 66.21 ? P PO4 466 A 1 HETATM 2 O O1 PO4 . . . D 3 21.687 46.443 17.472 1 69.46 ? O1 PO4 466 A 1 HETATM 3 O O2 PO4 . . . D 3 20.293 44.424 17.59 1 70.97 ? O2 PO4 466 A 1 HETATM 4 O O3 PO4 . . . D 3 19.454 46.47 16.466 1 69.29 ? O3 PO4 466 A 1 HETATM 5 O O4 PO4 . . . D 3 19.654 46.336 18.912 1 70.81 ? O4 PO4 466 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #