data_3L8V # _model_server_result.job_id swtzy_hmVLn5_exWxhgsBQ _model_server_result.datetime_utc '2024-11-04 22:54:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3L8V # _exptl.entry_id 3L8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.401 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({4-[(2-aminopyridin-4-yl)oxy]-3-fluorophenyl}amino)-N-(2,4-difluorophenyl)pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L8V _cell.length_a 42.8 _cell.length_b 47.25 _cell.length_c 154.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H16 F3 N5 O2' _chem_comp.formula_weight 451.401 _chem_comp.id L8V _chem_comp.mon_nstd_flag . _chem_comp.name 2-({4-[(2-aminopyridin-4-yl)oxy]-3-fluorophenyl}amino)-N-(2,4-difluorophenyl)pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 L8V doub 173 n y N1 C30 L8V sing 174 n y C2 C3 L8V sing 175 n y C2 N33 L8V sing 176 n n C3 C4 L8V doub 177 n y C4 O5 L8V sing 178 n n C4 C31 L8V sing 179 n y O5 C6 L8V sing 180 n n C6 C7 L8V doub 181 n y C6 C11 L8V sing 182 n y C7 C8 L8V sing 183 n y C8 C9 L8V doub 184 n y C9 C10 L8V sing 185 n y C9 N13 L8V sing 186 n n C10 C11 L8V doub 187 n y C11 F12 L8V sing 188 n n N13 C14 L8V sing 189 n n C14 C15 L8V doub 190 n y C14 N19 L8V sing 191 n y C15 C16 L8V sing 192 n y C15 C20 L8V sing 193 n n C16 C17 L8V doub 194 n y C17 C18 L8V sing 195 n y C18 N19 L8V doub 196 n y C20 O21 L8V doub 197 n n C20 N22 L8V sing 198 n n N22 C23 L8V sing 199 n n C23 C24 L8V doub 200 n y C23 C28 L8V sing 201 n y C24 C25 L8V sing 202 n y C25 C26 L8V doub 203 n y C26 C27 L8V sing 204 n y C26 F29 L8V sing 205 n n C27 C28 L8V doub 206 n y C28 F32 L8V sing 207 n n C30 C31 L8V doub 208 n y C3 H3 L8V sing 209 n n C7 H7 L8V sing 210 n n C8 H8 L8V sing 211 n n C10 H10 L8V sing 212 n n N13 HN13 L8V sing 213 n n C16 H16 L8V sing 214 n n C17 H17 L8V sing 215 n n C18 H18 L8V sing 216 n n N22 HN22 L8V sing 217 n n C24 H24 L8V sing 218 n n C25 H25 L8V sing 219 n n C27 H27 L8V sing 220 n n C30 H30 L8V sing 221 n n C31 H31 L8V sing 222 n n N33 HN33 L8V sing 223 n n N33 HN3A L8V sing 224 n n # _atom_sites.entry_id 3L8V _atom_sites.fract_transf_matrix[1][1] 0.023364 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L8V A 1 1 1 L8V LG1 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 43 43 HOH HOH . C 3 HOH A 43 44 44 HOH HOH . C 3 HOH A 44 45 45 HOH HOH . C 3 HOH A 45 46 46 HOH HOH . C 3 HOH A 46 47 47 HOH HOH . C 3 HOH A 47 48 48 HOH HOH . C 3 HOH A 48 49 49 HOH HOH . C 3 HOH A 49 50 50 HOH HOH . C 3 HOH A 50 51 51 HOH HOH . C 3 HOH A 51 52 52 HOH HOH . C 3 HOH A 52 53 53 HOH HOH . C 3 HOH A 53 54 54 HOH HOH . C 3 HOH A 54 55 55 HOH HOH . C 3 HOH A 55 56 56 HOH HOH . C 3 HOH A 56 57 57 HOH HOH . C 3 HOH A 57 58 58 HOH HOH . C 3 HOH A 58 59 59 HOH HOH . C 3 HOH A 59 60 60 HOH HOH . C 3 HOH A 60 61 61 HOH HOH . C 3 HOH A 61 62 62 HOH HOH . C 3 HOH A 62 63 63 HOH HOH . C 3 HOH A 63 64 64 HOH HOH . C 3 HOH A 64 65 65 HOH HOH . C 3 HOH A 65 66 66 HOH HOH . C 3 HOH A 66 67 67 HOH HOH . C 3 HOH A 67 68 68 HOH HOH . C 3 HOH A 68 69 69 HOH HOH . C 3 HOH A 69 70 70 HOH HOH . C 3 HOH A 70 71 71 HOH HOH . C 3 HOH A 71 72 72 HOH HOH . C 3 HOH A 72 73 73 HOH HOH . C 3 HOH A 73 74 74 HOH HOH . C 3 HOH A 74 75 75 HOH HOH . C 3 HOH A 75 76 76 HOH HOH . C 3 HOH A 76 77 77 HOH HOH . C 3 HOH A 77 78 78 HOH HOH . C 3 HOH A 78 79 79 HOH HOH . C 3 HOH A 79 80 80 HOH HOH . C 3 HOH A 80 81 81 HOH HOH . C 3 HOH A 81 82 82 HOH HOH . C 3 HOH A 82 83 83 HOH HOH . C 3 HOH A 83 84 84 HOH HOH . C 3 HOH A 84 85 85 HOH HOH . C 3 HOH A 85 86 86 HOH HOH . C 3 HOH A 86 87 87 HOH HOH . C 3 HOH A 87 88 88 HOH HOH . C 3 HOH A 88 89 89 HOH HOH . C 3 HOH A 89 90 90 HOH HOH . C 3 HOH A 90 91 91 HOH HOH . C 3 HOH A 91 92 92 HOH HOH . C 3 HOH A 92 93 93 HOH HOH . C 3 HOH A 93 94 94 HOH HOH . C 3 HOH A 94 95 95 HOH HOH . C 3 HOH A 95 96 96 HOH HOH . C 3 HOH A 96 97 97 HOH HOH . C 3 HOH A 97 98 98 HOH HOH . C 3 HOH A 98 99 99 HOH HOH . C 3 HOH A 99 100 100 HOH HOH . C 3 HOH A 100 1361 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 L8V . . . B 2 -1.08 12.667 59.405 1 24.5 ? N1 L8V 1 A 1 HETATM 2 C C2 L8V . . . B 2 0.164 13.189 59.451 1 23.19 ? C2 L8V 1 A 1 HETATM 3 C C3 L8V . . . B 2 1.145 12.751 58.553 1 22.9 ? C3 L8V 1 A 1 HETATM 4 C C4 L8V . . . B 2 0.766 11.754 57.62 1 23.69 ? C4 L8V 1 A 1 HETATM 5 O O5 L8V . . . B 2 1.784 11.341 56.735 1 25.55 ? O5 L8V 1 A 1 HETATM 6 C C6 L8V . . . B 2 1.648 10.122 56.055 1 26.8 ? C6 L8V 1 A 1 HETATM 7 C C7 L8V . . . B 2 1.891 8.867 56.685 1 24.67 ? C7 L8V 1 A 1 HETATM 8 C C8 L8V . . . B 2 1.739 7.671 55.957 1 23.18 ? C8 L8V 1 A 1 HETATM 9 C C9 L8V . . . B 2 1.351 7.718 54.608 1 25.1 ? C9 L8V 1 A 1 HETATM 10 C C10 L8V . . . B 2 1.113 8.941 53.978 1 26.45 ? C10 L8V 1 A 1 HETATM 11 C C11 L8V . . . B 2 1.261 10.118 54.706 1 28.57 ? C11 L8V 1 A 1 HETATM 12 F F12 L8V . . . B 2 1.022 11.26 54.073 1 31.6 ? F12 L8V 1 A 1 HETATM 13 N N13 L8V . . . B 2 1.23 6.53 53.984 1 28.35 ? N13 L8V 1 A 1 HETATM 14 C C14 L8V . . . B 2 0.882 6.193 52.714 1 31.39 ? C14 L8V 1 A 1 HETATM 15 C C15 L8V . . . B 2 0.476 4.87 52.494 1 30.73 ? C15 L8V 1 A 1 HETATM 16 C C16 L8V . . . B 2 0.121 4.536 51.173 1 28.31 ? C16 L8V 1 A 1 HETATM 17 C C17 L8V . . . B 2 0.157 5.447 50.117 1 27.99 ? C17 L8V 1 A 1 HETATM 18 C C18 L8V . . . B 2 0.575 6.742 50.439 1 31.31 ? C18 L8V 1 A 1 HETATM 19 N N19 L8V . . . B 2 0.926 7.101 51.7 1 32.55 ? N19 L8V 1 A 1 HETATM 20 C C20 L8V . . . B 2 0.426 3.878 53.583 1 29.8 ? C20 L8V 1 A 1 HETATM 21 O O21 L8V . . . B 2 0.686 4.131 54.762 1 29.8 ? O21 L8V 1 A 1 HETATM 22 N N22 L8V . . . B 2 0.068 2.632 53.207 1 26.81 ? N22 L8V 1 A 1 HETATM 23 C C23 L8V . . . B 2 -0.017 1.611 54.122 1 26.6 ? C23 L8V 1 A 1 HETATM 24 C C24 L8V . . . B 2 -1.035 1.551 55.134 1 23.26 ? C24 L8V 1 A 1 HETATM 25 C C25 L8V . . . B 2 -1.053 0.456 56.048 1 24.98 ? C25 L8V 1 A 1 HETATM 26 C C26 L8V . . . B 2 -0.051 -0.553 55.924 1 26.69 ? C26 L8V 1 A 1 HETATM 27 C C27 L8V . . . B 2 0.943 -0.519 54.957 1 25.89 ? C27 L8V 1 A 1 HETATM 28 C C28 L8V . . . B 2 0.943 0.562 54.072 1 28.15 ? C28 L8V 1 A 1 HETATM 29 F F29 L8V . . . B 2 0.009 -1.61 56.73 1 29.74 ? F29 L8V 1 A 1 HETATM 30 C C30 L8V . . . B 2 -1.447 11.716 58.519 1 24.35 ? C30 L8V 1 A 1 HETATM 31 C C31 L8V . . . B 2 -0.554 11.218 57.593 1 22.28 ? C31 L8V 1 A 1 HETATM 32 F F32 L8V . . . B 2 1.909 0.57 53.152 1 30.95 ? F32 L8V 1 A 1 HETATM 33 N N33 L8V . . . B 2 0.399 14.141 60.399 1 18.52 ? N33 L8V 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 33 #