data_3L8X # _model_server_result.job_id qh8ZpcIg5oCbCBB5ZnyWUw _model_server_result.datetime_utc '2024-10-19 15:39:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":361}' # _entry.id 3L8X # _exptl.entry_id 3L8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.397 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,4-dimethyl-3-[(1-phenyl-1H-pyrazolo[3,4-d]pyrimidin-4-yl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L8X _cell.length_a 67.392 _cell.length_b 71.148 _cell.length_c 73.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H18 N6 O' _chem_comp.formula_weight 358.397 _chem_comp.id N4D _chem_comp.mon_nstd_flag . _chem_comp.name N,4-dimethyl-3-[(1-phenyl-1H-pyrazolo[3,4-d]pyrimidin-4-yl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C15 N4D doub 237 n y C13 C19 N4D sing 238 n n C13 C5 N4D sing 239 n y C18 C12 N4D sing 240 n n C18 N26 N4D sing 241 n n C18 O27 N4D doub 242 n n C17 C11 N4D doub 243 n y C17 N23 N4D sing 244 n y C17 N25 N4D sing 245 n n C16 C11 N4D sing 246 n y C16 N22 N4D doub 247 n y C16 N24 N4D sing 248 n y C15 C8 N4D sing 249 n y C15 N25 N4D sing 250 n n C20 N26 N4D sing 251 n n C11 C9 N4D sing 252 n y C12 C4 N4D sing 253 n y C12 C8 N4D doub 254 n y C1 C2 N4D doub 255 n y C1 C3 N4D sing 256 n y C2 C6 N4D sing 257 n y C3 C7 N4D doub 258 n y C4 C5 N4D doub 259 n y C6 C14 N4D doub 260 n y C7 C14 N4D sing 261 n y C9 N21 N4D doub 262 n y C10 N22 N4D sing 263 n y C10 N23 N4D doub 264 n y C14 N24 N4D sing 265 n y N21 N24 N4D sing 266 n y C19 H19 N4D sing 267 n n C19 H19A N4D sing 268 n n C19 H19B N4D sing 269 n n C20 H20 N4D sing 270 n n C20 H20A N4D sing 271 n n C20 H20B N4D sing 272 n n C1 H1 N4D sing 273 n n C2 H2 N4D sing 274 n n C3 H3 N4D sing 275 n n C4 H4 N4D sing 276 n n C5 H5 N4D sing 277 n n C6 H6 N4D sing 278 n n C7 H7 N4D sing 279 n n C8 H8 N4D sing 280 n n C9 H9 N4D sing 281 n n C10 H10 N4D sing 282 n n N25 HN25 N4D sing 283 n n N26 HN26 N4D sing 284 n n # _atom_sites.entry_id 3L8X _atom_sites.fract_transf_matrix[1][1] 0.014839 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N4D A 1 361 361 N4D N4D . C 3 HOH A 1 362 1 HOH HOH . C 3 HOH A 2 363 2 HOH HOH . C 3 HOH A 3 364 3 HOH HOH . C 3 HOH A 4 365 4 HOH HOH . C 3 HOH A 5 366 5 HOH HOH . C 3 HOH A 6 367 6 HOH HOH . C 3 HOH A 7 368 7 HOH HOH . C 3 HOH A 8 369 8 HOH HOH . C 3 HOH A 9 370 9 HOH HOH . C 3 HOH A 10 371 10 HOH HOH . C 3 HOH A 11 372 11 HOH HOH . C 3 HOH A 12 373 12 HOH HOH . C 3 HOH A 13 374 13 HOH HOH . C 3 HOH A 14 375 14 HOH HOH . C 3 HOH A 15 376 15 HOH HOH . C 3 HOH A 16 377 16 HOH HOH . C 3 HOH A 17 378 17 HOH HOH . C 3 HOH A 18 379 18 HOH HOH . C 3 HOH A 19 380 19 HOH HOH . C 3 HOH A 20 381 20 HOH HOH . C 3 HOH A 21 382 21 HOH HOH . C 3 HOH A 22 383 22 HOH HOH . C 3 HOH A 23 384 23 HOH HOH . C 3 HOH A 24 385 24 HOH HOH . C 3 HOH A 25 386 25 HOH HOH . C 3 HOH A 26 387 26 HOH HOH . C 3 HOH A 27 388 27 HOH HOH . C 3 HOH A 28 389 28 HOH HOH . C 3 HOH A 29 390 29 HOH HOH . C 3 HOH A 30 391 30 HOH HOH . C 3 HOH A 31 392 31 HOH HOH . C 3 HOH A 32 393 32 HOH HOH . C 3 HOH A 33 394 33 HOH HOH . C 3 HOH A 34 395 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 N4D . . . B 2 -4.809 -2.777 -22.393 1 34.6 ? C13 N4D 361 A 1 HETATM 2 C C18 N4D . . . B 2 -1.481 -1.111 -24.519 1 26.25 ? C18 N4D 361 A 1 HETATM 3 C C17 N4D . . . B 2 -2.715 -4.112 -19.9 1 39.33 ? C17 N4D 361 A 1 HETATM 4 C C16 N4D . . . B 2 -1.871 -5.159 -17.908 1 41.08 ? C16 N4D 361 A 1 HETATM 5 C C15 N4D . . . B 2 -3.498 -3.225 -22.136 1 35.39 ? C15 N4D 361 A 1 HETATM 6 C C19 N4D . . . B 2 -5.988 -3.35 -21.658 1 31.59 ? C19 N4D 361 A 1 HETATM 7 C C20 N4D . . . B 2 -0.744 0.55 -26.174 1 19.1 ? C20 N4D 361 A 1 HETATM 8 C C11 N4D . . . B 2 -2.423 -5.279 -19.172 1 39.6 ? C11 N4D 361 A 1 HETATM 9 C C12 N4D . . . B 2 -2.645 -1.672 -23.797 1 31.42 ? C12 N4D 361 A 1 HETATM 10 C C1 N4D . . . B 2 -0.164 -7.795 -13.721 1 48.08 ? C1 N4D 361 A 1 HETATM 11 C C2 N4D . . . B 2 0.522 -6.818 -14.438 1 48.73 ? C2 N4D 361 A 1 HETATM 12 C C3 N4D . . . B 2 -1.347 -8.321 -14.23 1 46.91 ? C3 N4D 361 A 1 HETATM 13 C C4 N4D . . . B 2 -3.944 -1.229 -24.052 1 32.91 ? C4 N4D 361 A 1 HETATM 14 C C5 N4D . . . B 2 -5.017 -1.779 -23.354 1 34.83 ? C5 N4D 361 A 1 HETATM 15 C C6 N4D . . . B 2 0.03 -6.363 -15.665 1 48.82 ? C6 N4D 361 A 1 HETATM 16 C C7 N4D . . . B 2 -1.844 -7.873 -15.454 1 46.63 ? C7 N4D 361 A 1 HETATM 17 C C8 N4D . . . B 2 -2.421 -2.668 -22.839 1 34.28 ? C8 N4D 361 A 1 HETATM 18 C C9 N4D . . . B 2 -2.541 -6.662 -19.376 1 39.72 ? C9 N4D 361 A 1 HETATM 19 C C10 N4D . . . B 2 -1.893 -2.935 -18.068 1 40.12 ? C10 N4D 361 A 1 HETATM 20 C C14 N4D . . . B 2 -1.157 -6.888 -16.184 1 46.71 ? C14 N4D 361 A 1 HETATM 21 N N21 N4D . . . B 2 -2.106 -7.373 -18.342 1 42.27 ? N21 N4D 361 A 1 HETATM 22 N N22 N4D . . . B 2 -1.581 -3.996 -17.298 1 39.7 ? N22 N4D 361 A 1 HETATM 23 N N23 N4D . . . B 2 -2.431 -2.918 -19.308 1 39.18 ? N23 N4D 361 A 1 HETATM 24 N N24 N4D . . . B 2 -1.689 -6.45 -17.429 1 45.34 ? N24 N4D 361 A 1 HETATM 25 N N25 N4D . . . B 2 -3.271 -4.222 -21.176 1 37.33 ? N25 N4D 361 A 1 HETATM 26 N N26 N4D . . . B 2 -1.707 0.061 -25.219 1 23.51 ? N26 N4D 361 A 1 HETATM 27 O O27 N4D . . . B 2 -0.403 -1.695 -24.464 1 25.45 ? O27 N4D 361 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #