data_3L8Y # _model_server_result.job_id KJ7OplNa55lXXuAA1LuJxg _model_server_result.datetime_utc '2024-11-16 17:40:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 3L8Y # _exptl.entry_id 3L8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3L8Y _cell.length_a 88 _cell.length_b 88 _cell.length_c 134 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3L8Y _atom_sites.fract_transf_matrix[1][1] 0.011364 _atom_sites.fract_transf_matrix[1][2] 0.006561 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 MG A 1 202 202 MG MG . D 4 CA A 1 203 203 CA CA . E 4 CA A 1 204 204 CA CA . F 4 CA A 1 205 205 CA CA . G 4 CA A 1 206 206 CA CA . H 5 YCN A 1 300 300 YCN UNK . I 6 ZN A 1 301 300 ZN UNK . J 7 HOH A 1 167 2 HOH HOH . J 7 HOH A 2 168 168 HOH HOH . J 7 HOH A 3 169 169 HOH HOH . J 7 HOH A 4 170 3 HOH HOH . J 7 HOH A 5 171 4 HOH HOH . J 7 HOH A 6 172 172 HOH HOH . J 7 HOH A 7 173 173 HOH HOH . J 7 HOH A 8 174 5 HOH HOH . J 7 HOH A 9 175 175 HOH HOH . J 7 HOH A 10 176 6 HOH HOH . J 7 HOH A 11 177 177 HOH HOH . J 7 HOH A 12 178 7 HOH HOH . J 7 HOH A 13 179 179 HOH HOH . J 7 HOH A 14 180 180 HOH HOH . J 7 HOH A 15 181 8 HOH HOH . J 7 HOH A 16 182 182 HOH HOH . J 7 HOH A 17 183 183 HOH HOH . J 7 HOH A 18 184 184 HOH HOH . J 7 HOH A 19 185 9 HOH HOH . J 7 HOH A 20 186 10 HOH HOH . J 7 HOH A 21 187 11 HOH HOH . J 7 HOH A 22 188 12 HOH HOH . J 7 HOH A 23 189 13 HOH HOH . J 7 HOH A 24 190 14 HOH HOH . J 7 HOH A 25 191 15 HOH HOH . J 7 HOH A 26 192 16 HOH HOH . J 7 HOH A 27 193 17 HOH HOH . J 7 HOH A 28 194 18 HOH HOH . J 7 HOH A 29 195 19 HOH HOH . J 7 HOH A 30 196 20 HOH HOH . J 7 HOH A 31 197 21 HOH HOH . J 7 HOH A 32 198 22 HOH HOH . J 7 HOH A 33 199 23 HOH HOH . J 7 HOH A 34 200 24 HOH HOH . J 7 HOH A 35 207 25 HOH HOH . J 7 HOH A 36 208 26 HOH HOH . J 7 HOH A 37 209 27 HOH HOH . J 7 HOH A 38 210 28 HOH HOH . J 7 HOH A 39 211 29 HOH HOH . J 7 HOH A 40 212 30 HOH HOH . J 7 HOH A 41 213 31 HOH HOH . J 7 HOH A 42 214 32 HOH HOH . J 7 HOH A 43 215 33 HOH HOH . J 7 HOH A 44 216 34 HOH HOH . J 7 HOH A 45 217 35 HOH HOH . J 7 HOH A 46 218 36 HOH HOH . J 7 HOH A 47 219 37 HOH HOH . J 7 HOH A 48 220 38 HOH HOH . J 7 HOH A 49 221 39 HOH HOH . J 7 HOH A 50 222 40 HOH HOH . J 7 HOH A 51 223 42 HOH HOH . J 7 HOH A 52 224 43 HOH HOH . J 7 HOH A 53 225 44 HOH HOH . J 7 HOH A 54 226 45 HOH HOH . J 7 HOH A 55 227 46 HOH HOH . J 7 HOH A 56 228 47 HOH HOH . J 7 HOH A 57 229 48 HOH HOH . J 7 HOH A 58 230 49 HOH HOH . J 7 HOH A 59 231 50 HOH HOH . J 7 HOH A 60 232 51 HOH HOH . J 7 HOH A 61 233 52 HOH HOH . J 7 HOH A 62 234 53 HOH HOH . J 7 HOH A 63 235 54 HOH HOH . J 7 HOH A 64 236 58 HOH HOH . J 7 HOH A 65 237 59 HOH HOH . J 7 HOH A 66 238 62 HOH HOH . J 7 HOH A 67 239 63 HOH HOH . J 7 HOH A 68 240 64 HOH HOH . J 7 HOH A 69 241 71 HOH HOH . J 7 HOH A 70 242 72 HOH HOH . J 7 HOH A 71 243 73 HOH HOH . J 7 HOH A 72 244 74 HOH HOH . J 7 HOH A 73 245 75 HOH HOH . J 7 HOH A 74 246 76 HOH HOH . J 7 HOH A 75 247 77 HOH HOH . J 7 HOH A 76 248 78 HOH HOH . J 7 HOH A 77 249 79 HOH HOH . J 7 HOH A 78 250 80 HOH HOH . J 7 HOH A 79 251 81 HOH HOH . J 7 HOH A 80 252 82 HOH HOH . J 7 HOH A 81 253 84 HOH HOH . J 7 HOH A 82 254 85 HOH HOH . J 7 HOH A 83 255 86 HOH HOH . J 7 HOH A 84 256 87 HOH HOH . J 7 HOH A 85 257 88 HOH HOH . J 7 HOH A 86 258 89 HOH HOH . J 7 HOH A 87 259 90 HOH HOH . J 7 HOH A 88 260 91 HOH HOH . J 7 HOH A 89 261 92 HOH HOH . J 7 HOH A 90 262 93 HOH HOH . J 7 HOH A 91 263 94 HOH HOH . J 7 HOH A 92 264 95 HOH HOH . J 7 HOH A 93 265 96 HOH HOH . J 7 HOH A 94 266 97 HOH HOH . J 7 HOH A 95 267 98 HOH HOH . J 7 HOH A 96 268 99 HOH HOH . J 7 HOH A 97 269 100 HOH HOH . J 7 HOH A 98 270 101 HOH HOH . J 7 HOH A 99 271 102 HOH HOH . J 7 HOH A 100 272 103 HOH HOH . J 7 HOH A 101 273 104 HOH HOH . J 7 HOH A 102 274 105 HOH HOH . J 7 HOH A 103 275 106 HOH HOH . J 7 HOH A 104 276 107 HOH HOH . J 7 HOH A 105 277 108 HOH HOH . J 7 HOH A 106 278 109 HOH HOH . J 7 HOH A 107 279 110 HOH HOH . J 7 HOH A 108 280 111 HOH HOH . J 7 HOH A 109 281 112 HOH HOH . J 7 HOH A 110 282 113 HOH HOH . J 7 HOH A 111 283 114 HOH HOH . J 7 HOH A 112 284 116 HOH HOH . J 7 HOH A 113 285 117 HOH HOH . J 7 HOH A 114 286 118 HOH HOH . J 7 HOH A 115 287 119 HOH HOH . J 7 HOH A 116 288 120 HOH HOH . J 7 HOH A 117 289 121 HOH HOH . J 7 HOH A 118 290 122 HOH HOH . J 7 HOH A 119 291 123 HOH HOH . J 7 HOH A 120 292 124 HOH HOH . J 7 HOH A 121 293 125 HOH HOH . J 7 HOH A 122 294 126 HOH HOH . J 7 HOH A 123 295 127 HOH HOH . J 7 HOH A 124 296 129 HOH HOH . J 7 HOH A 125 297 131 HOH HOH . J 7 HOH A 126 298 133 HOH HOH . J 7 HOH A 127 299 137 HOH HOH . J 7 HOH A 128 302 139 HOH HOH . J 7 HOH A 129 303 142 HOH HOH . J 7 HOH A 130 304 143 HOH HOH . J 7 HOH A 131 305 147 HOH HOH . J 7 HOH A 132 306 149 HOH HOH . J 7 HOH A 133 307 150 HOH HOH . J 7 HOH A 134 308 153 HOH HOH . J 7 HOH A 135 309 154 HOH HOH . J 7 HOH A 136 310 155 HOH HOH . J 7 HOH A 137 311 158 HOH HOH . J 7 HOH A 138 312 159 HOH HOH . J 7 HOH A 139 313 161 HOH HOH . J 7 HOH A 140 314 162 HOH HOH . J 7 HOH A 141 315 164 HOH HOH . J 7 HOH A 142 316 166 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 15.127 _atom_site.Cartn_y -24.605 _atom_site.Cartn_z -22.333 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 28.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #