data_3L8Y # _model_server_result.job_id rLEoTrXOMiMiRxmqB-gy_A _model_server_result.datetime_utc '2025-07-08 18:06:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":300}' # _entry.id 3L8Y # _exptl.entry_id 3L8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.271 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4,7,10-tetraazacyclododecane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3L8Y _cell.length_a 88 _cell.length_b 88 _cell.length_c 134 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H20 N4' _chem_comp.formula_weight 172.271 _chem_comp.id YCN _chem_comp.mon_nstd_flag . _chem_comp.name 1,4,7,10-tetraazacyclododecane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Cyclen # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 YCN sing 399 n n C1 C2 YCN sing 400 n n N1 C8 YCN sing 401 n n C2 N2 YCN sing 402 n n N2 C3 YCN sing 403 n n C3 C4 YCN sing 404 n n N3 C4 YCN sing 405 n n N3 C5 YCN sing 406 n n N4 C6 YCN sing 407 n n N4 C7 YCN sing 408 n n C5 C6 YCN sing 409 n n C7 C8 YCN sing 410 n n C1 H1 YCN sing 411 n n C1 H1A YCN sing 412 n n N1 HN1 YCN sing 413 n n C2 H2 YCN sing 414 n n C2 H2A YCN sing 415 n n N2 HN2 YCN sing 416 n n C3 H3 YCN sing 417 n n C3 H3A YCN sing 418 n n N3 HN3 YCN sing 419 n n C4 H4 YCN sing 420 n n C4 H4A YCN sing 421 n n N4 HN4 YCN sing 422 n n C5 H5 YCN sing 423 n n C5 H5A YCN sing 424 n n C6 H6 YCN sing 425 n n C6 H6A YCN sing 426 n n C7 H7 YCN sing 427 n n C7 H7A YCN sing 428 n n C8 H8 YCN sing 429 n n C8 H8A YCN sing 430 n n # _atom_sites.entry_id 3L8Y _atom_sites.fract_transf_matrix[1][1] 0.011364 _atom_sites.fract_transf_matrix[1][2] 0.006561 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 MG A 1 202 202 MG MG . D 4 CA A 1 203 203 CA CA . E 4 CA A 1 204 204 CA CA . F 4 CA A 1 205 205 CA CA . G 4 CA A 1 206 206 CA CA . H 5 YCN A 1 300 300 YCN UNK . I 6 ZN A 1 301 300 ZN UNK . J 7 HOH A 1 167 2 HOH HOH . J 7 HOH A 2 168 168 HOH HOH . J 7 HOH A 3 169 169 HOH HOH . J 7 HOH A 4 170 3 HOH HOH . J 7 HOH A 5 171 4 HOH HOH . J 7 HOH A 6 172 172 HOH HOH . J 7 HOH A 7 173 173 HOH HOH . J 7 HOH A 8 174 5 HOH HOH . J 7 HOH A 9 175 175 HOH HOH . J 7 HOH A 10 176 6 HOH HOH . J 7 HOH A 11 177 177 HOH HOH . J 7 HOH A 12 178 7 HOH HOH . J 7 HOH A 13 179 179 HOH HOH . J 7 HOH A 14 180 180 HOH HOH . J 7 HOH A 15 181 8 HOH HOH . J 7 HOH A 16 182 182 HOH HOH . J 7 HOH A 17 183 183 HOH HOH . J 7 HOH A 18 184 184 HOH HOH . J 7 HOH A 19 185 9 HOH HOH . J 7 HOH A 20 186 10 HOH HOH . J 7 HOH A 21 187 11 HOH HOH . J 7 HOH A 22 188 12 HOH HOH . J 7 HOH A 23 189 13 HOH HOH . J 7 HOH A 24 190 14 HOH HOH . J 7 HOH A 25 191 15 HOH HOH . J 7 HOH A 26 192 16 HOH HOH . J 7 HOH A 27 193 17 HOH HOH . J 7 HOH A 28 194 18 HOH HOH . J 7 HOH A 29 195 19 HOH HOH . J 7 HOH A 30 196 20 HOH HOH . J 7 HOH A 31 197 21 HOH HOH . J 7 HOH A 32 198 22 HOH HOH . J 7 HOH A 33 199 23 HOH HOH . J 7 HOH A 34 200 24 HOH HOH . J 7 HOH A 35 207 25 HOH HOH . J 7 HOH A 36 208 26 HOH HOH . J 7 HOH A 37 209 27 HOH HOH . J 7 HOH A 38 210 28 HOH HOH . J 7 HOH A 39 211 29 HOH HOH . J 7 HOH A 40 212 30 HOH HOH . J 7 HOH A 41 213 31 HOH HOH . J 7 HOH A 42 214 32 HOH HOH . J 7 HOH A 43 215 33 HOH HOH . J 7 HOH A 44 216 34 HOH HOH . J 7 HOH A 45 217 35 HOH HOH . J 7 HOH A 46 218 36 HOH HOH . J 7 HOH A 47 219 37 HOH HOH . J 7 HOH A 48 220 38 HOH HOH . J 7 HOH A 49 221 39 HOH HOH . J 7 HOH A 50 222 40 HOH HOH . J 7 HOH A 51 223 42 HOH HOH . J 7 HOH A 52 224 43 HOH HOH . J 7 HOH A 53 225 44 HOH HOH . J 7 HOH A 54 226 45 HOH HOH . J 7 HOH A 55 227 46 HOH HOH . J 7 HOH A 56 228 47 HOH HOH . J 7 HOH A 57 229 48 HOH HOH . J 7 HOH A 58 230 49 HOH HOH . J 7 HOH A 59 231 50 HOH HOH . J 7 HOH A 60 232 51 HOH HOH . J 7 HOH A 61 233 52 HOH HOH . J 7 HOH A 62 234 53 HOH HOH . J 7 HOH A 63 235 54 HOH HOH . J 7 HOH A 64 236 58 HOH HOH . J 7 HOH A 65 237 59 HOH HOH . J 7 HOH A 66 238 62 HOH HOH . J 7 HOH A 67 239 63 HOH HOH . J 7 HOH A 68 240 64 HOH HOH . J 7 HOH A 69 241 71 HOH HOH . J 7 HOH A 70 242 72 HOH HOH . J 7 HOH A 71 243 73 HOH HOH . J 7 HOH A 72 244 74 HOH HOH . J 7 HOH A 73 245 75 HOH HOH . J 7 HOH A 74 246 76 HOH HOH . J 7 HOH A 75 247 77 HOH HOH . J 7 HOH A 76 248 78 HOH HOH . J 7 HOH A 77 249 79 HOH HOH . J 7 HOH A 78 250 80 HOH HOH . J 7 HOH A 79 251 81 HOH HOH . J 7 HOH A 80 252 82 HOH HOH . J 7 HOH A 81 253 84 HOH HOH . J 7 HOH A 82 254 85 HOH HOH . J 7 HOH A 83 255 86 HOH HOH . J 7 HOH A 84 256 87 HOH HOH . J 7 HOH A 85 257 88 HOH HOH . J 7 HOH A 86 258 89 HOH HOH . J 7 HOH A 87 259 90 HOH HOH . J 7 HOH A 88 260 91 HOH HOH . J 7 HOH A 89 261 92 HOH HOH . J 7 HOH A 90 262 93 HOH HOH . J 7 HOH A 91 263 94 HOH HOH . J 7 HOH A 92 264 95 HOH HOH . J 7 HOH A 93 265 96 HOH HOH . J 7 HOH A 94 266 97 HOH HOH . J 7 HOH A 95 267 98 HOH HOH . J 7 HOH A 96 268 99 HOH HOH . J 7 HOH A 97 269 100 HOH HOH . J 7 HOH A 98 270 101 HOH HOH . J 7 HOH A 99 271 102 HOH HOH . J 7 HOH A 100 272 103 HOH HOH . J 7 HOH A 101 273 104 HOH HOH . J 7 HOH A 102 274 105 HOH HOH . J 7 HOH A 103 275 106 HOH HOH . J 7 HOH A 104 276 107 HOH HOH . J 7 HOH A 105 277 108 HOH HOH . J 7 HOH A 106 278 109 HOH HOH . J 7 HOH A 107 279 110 HOH HOH . J 7 HOH A 108 280 111 HOH HOH . J 7 HOH A 109 281 112 HOH HOH . J 7 HOH A 110 282 113 HOH HOH . J 7 HOH A 111 283 114 HOH HOH . J 7 HOH A 112 284 116 HOH HOH . J 7 HOH A 113 285 117 HOH HOH . J 7 HOH A 114 286 118 HOH HOH . J 7 HOH A 115 287 119 HOH HOH . J 7 HOH A 116 288 120 HOH HOH . J 7 HOH A 117 289 121 HOH HOH . J 7 HOH A 118 290 122 HOH HOH . J 7 HOH A 119 291 123 HOH HOH . J 7 HOH A 120 292 124 HOH HOH . J 7 HOH A 121 293 125 HOH HOH . J 7 HOH A 122 294 126 HOH HOH . J 7 HOH A 123 295 127 HOH HOH . J 7 HOH A 124 296 129 HOH HOH . J 7 HOH A 125 297 131 HOH HOH . J 7 HOH A 126 298 133 HOH HOH . J 7 HOH A 127 299 137 HOH HOH . J 7 HOH A 128 302 139 HOH HOH . J 7 HOH A 129 303 142 HOH HOH . J 7 HOH A 130 304 143 HOH HOH . J 7 HOH A 131 305 147 HOH HOH . J 7 HOH A 132 306 149 HOH HOH . J 7 HOH A 133 307 150 HOH HOH . J 7 HOH A 134 308 153 HOH HOH . J 7 HOH A 135 309 154 HOH HOH . J 7 HOH A 136 310 155 HOH HOH . J 7 HOH A 137 311 158 HOH HOH . J 7 HOH A 138 312 159 HOH HOH . J 7 HOH A 139 313 161 HOH HOH . J 7 HOH A 140 314 162 HOH HOH . J 7 HOH A 141 315 164 HOH HOH . J 7 HOH A 142 316 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YCN . . . H 5 11.1 -34.097 -31.906 1 103.88 ? C1 YCN 300 A 1 HETATM 2 N N1 YCN . . . H 5 11.817 -34.322 -33.185 1 103.9 ? N1 YCN 300 A 1 HETATM 3 C C2 YCN . . . H 5 11.361 -32.689 -31.341 1 103.93 ? C2 YCN 300 A 1 HETATM 4 N N2 YCN . . . H 5 10.693 -31.544 -31.983 1 103.93 ? N2 YCN 300 A 1 HETATM 5 C C3 YCN . . . H 5 11.208 -30.275 -31.431 1 103.86 ? C3 YCN 300 A 1 HETATM 6 N N3 YCN . . . H 5 13.159 -30.735 -33.009 1 103.81 ? N3 YCN 300 A 1 HETATM 7 C C4 YCN . . . H 5 12.56 -29.834 -32.029 1 103.82 ? C4 YCN 300 A 1 HETATM 8 N N4 YCN . . . H 5 14.388 -32.788 -34.719 1 103.76 ? N4 YCN 300 A 1 HETATM 9 C C5 YCN . . . H 5 14.513 -30.578 -33.528 1 103.73 ? C5 YCN 300 A 1 HETATM 10 C C6 YCN . . . H 5 15.185 -31.902 -33.887 1 103.72 ? C6 YCN 300 A 1 HETATM 11 C C7 YCN . . . H 5 14.093 -34.172 -34.346 1 103.82 ? C7 YCN 300 A 1 HETATM 12 C C8 YCN . . . H 5 13.286 -34.163 -33.05 1 103.89 ? C8 YCN 300 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 12 #