data_3L9A # _model_server_result.job_id 8iEMF2EZeXKH7i2Sbf0vIQ _model_server_result.datetime_utc '2024-12-22 05:56:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":240}' # _entry.id 3L9A # _exptl.entry_id 3L9A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L9A _cell.length_a 64.08 _cell.length_b 64.08 _cell.length_c 39.975 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 64.08 64.08 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 64.08 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 64.08 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 8 X MSE 159 1_555 A N ARG 9 X ARG 160 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C MSE 8 X MSE 159 1_555 A N ARG 9 X ARG 160 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 D O HOH . X HOH 113 1_555 C NA NA . X NA 240 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc2 D O HOH . X HOH 118 1_555 C NA NA . X NA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 A OE2 GLU 49 X GLU 200 1_555 C NA NA . X NA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3L9A _atom_sites.fract_transf_matrix[1][1] 0.015605 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL X 1 1 1 GOL GOL . C 3 NA X 1 240 1 NA NA . D 4 HOH X 1 2 2 HOH HOH . D 4 HOH X 2 3 3 HOH HOH . D 4 HOH X 3 4 4 HOH HOH . D 4 HOH X 4 5 5 HOH HOH . D 4 HOH X 5 6 6 HOH HOH . D 4 HOH X 6 7 7 HOH HOH . D 4 HOH X 7 8 8 HOH HOH . D 4 HOH X 8 9 9 HOH HOH . D 4 HOH X 9 10 10 HOH HOH . D 4 HOH X 10 11 11 HOH HOH . D 4 HOH X 11 12 12 HOH HOH . D 4 HOH X 12 13 13 HOH HOH . D 4 HOH X 13 14 14 HOH HOH . D 4 HOH X 14 15 15 HOH HOH . D 4 HOH X 15 16 16 HOH HOH . D 4 HOH X 16 17 17 HOH HOH . D 4 HOH X 17 18 18 HOH HOH . D 4 HOH X 18 19 19 HOH HOH . D 4 HOH X 19 20 20 HOH HOH . D 4 HOH X 20 21 21 HOH HOH . D 4 HOH X 21 22 22 HOH HOH . D 4 HOH X 22 23 23 HOH HOH . D 4 HOH X 23 24 24 HOH HOH . D 4 HOH X 24 25 25 HOH HOH . D 4 HOH X 25 26 26 HOH HOH . D 4 HOH X 26 27 27 HOH HOH . D 4 HOH X 27 28 28 HOH HOH . D 4 HOH X 28 29 29 HOH HOH . D 4 HOH X 29 30 30 HOH HOH . D 4 HOH X 30 31 31 HOH HOH . D 4 HOH X 31 32 32 HOH HOH . D 4 HOH X 32 33 33 HOH HOH . D 4 HOH X 33 34 34 HOH HOH . D 4 HOH X 34 35 35 HOH HOH . D 4 HOH X 35 36 36 HOH HOH . D 4 HOH X 36 37 37 HOH HOH . D 4 HOH X 37 38 38 HOH HOH . D 4 HOH X 38 39 39 HOH HOH . D 4 HOH X 39 40 40 HOH HOH . D 4 HOH X 40 41 41 HOH HOH . D 4 HOH X 41 42 42 HOH HOH . D 4 HOH X 42 43 43 HOH HOH . D 4 HOH X 43 44 44 HOH HOH . D 4 HOH X 44 45 45 HOH HOH . D 4 HOH X 45 46 46 HOH HOH . D 4 HOH X 46 47 47 HOH HOH . D 4 HOH X 47 48 48 HOH HOH . D 4 HOH X 48 49 49 HOH HOH . D 4 HOH X 49 50 50 HOH HOH . D 4 HOH X 50 51 51 HOH HOH . D 4 HOH X 51 52 52 HOH HOH . D 4 HOH X 52 53 53 HOH HOH . D 4 HOH X 53 54 54 HOH HOH . D 4 HOH X 54 55 55 HOH HOH . D 4 HOH X 55 56 56 HOH HOH . D 4 HOH X 56 57 57 HOH HOH . D 4 HOH X 57 58 58 HOH HOH . D 4 HOH X 58 59 59 HOH HOH . D 4 HOH X 59 60 60 HOH HOH . D 4 HOH X 60 61 61 HOH HOH . D 4 HOH X 61 62 62 HOH HOH . D 4 HOH X 62 63 63 HOH HOH . D 4 HOH X 63 64 64 HOH HOH . D 4 HOH X 64 65 65 HOH HOH . D 4 HOH X 65 66 66 HOH HOH . D 4 HOH X 66 67 67 HOH HOH . D 4 HOH X 67 68 68 HOH HOH . D 4 HOH X 68 69 69 HOH HOH . D 4 HOH X 69 70 70 HOH HOH . D 4 HOH X 70 71 71 HOH HOH . D 4 HOH X 71 72 72 HOH HOH . D 4 HOH X 72 73 73 HOH HOH . D 4 HOH X 73 74 74 HOH HOH . D 4 HOH X 74 75 75 HOH HOH . D 4 HOH X 75 76 76 HOH HOH . D 4 HOH X 76 77 77 HOH HOH . D 4 HOH X 77 78 78 HOH HOH . D 4 HOH X 78 79 79 HOH HOH . D 4 HOH X 79 80 80 HOH HOH . D 4 HOH X 80 81 81 HOH HOH . D 4 HOH X 81 82 82 HOH HOH . D 4 HOH X 82 83 83 HOH HOH . D 4 HOH X 83 84 84 HOH HOH . D 4 HOH X 84 85 85 HOH HOH . D 4 HOH X 85 86 86 HOH HOH . D 4 HOH X 86 87 87 HOH HOH . D 4 HOH X 87 88 88 HOH HOH . D 4 HOH X 88 89 89 HOH HOH . D 4 HOH X 89 90 90 HOH HOH . D 4 HOH X 90 91 91 HOH HOH . D 4 HOH X 91 92 92 HOH HOH . D 4 HOH X 92 93 93 HOH HOH . D 4 HOH X 93 94 94 HOH HOH . D 4 HOH X 94 95 95 HOH HOH . D 4 HOH X 95 96 96 HOH HOH . D 4 HOH X 96 97 97 HOH HOH . D 4 HOH X 97 98 98 HOH HOH . D 4 HOH X 98 99 99 HOH HOH . D 4 HOH X 99 100 100 HOH HOH . D 4 HOH X 100 101 101 HOH HOH . D 4 HOH X 101 102 102 HOH HOH . D 4 HOH X 102 103 103 HOH HOH . D 4 HOH X 103 104 104 HOH HOH . D 4 HOH X 104 105 105 HOH HOH . D 4 HOH X 105 106 106 HOH HOH . D 4 HOH X 106 107 107 HOH HOH . D 4 HOH X 107 108 108 HOH HOH . D 4 HOH X 108 109 109 HOH HOH . D 4 HOH X 109 110 110 HOH HOH . D 4 HOH X 110 111 111 HOH HOH . D 4 HOH X 111 112 112 HOH HOH . D 4 HOH X 112 113 113 HOH HOH . D 4 HOH X 113 114 114 HOH HOH . D 4 HOH X 114 115 115 HOH HOH . D 4 HOH X 115 116 116 HOH HOH . D 4 HOH X 116 117 117 HOH HOH . D 4 HOH X 117 118 118 HOH HOH . D 4 HOH X 118 119 119 HOH HOH . D 4 HOH X 119 120 120 HOH HOH . D 4 HOH X 120 121 121 HOH HOH . D 4 HOH X 121 122 122 HOH HOH . D 4 HOH X 122 123 123 HOH HOH . D 4 HOH X 123 124 124 HOH HOH . D 4 HOH X 124 126 126 HOH HOH . D 4 HOH X 125 127 127 HOH HOH . D 4 HOH X 126 128 128 HOH HOH . D 4 HOH X 127 241 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 28.877 _atom_site.Cartn_y 9.256 _atom_site.Cartn_z 18.591 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 240 _atom_site.auth_asym_id X _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #