data_3L9J # _model_server_result.job_id wvLnMjXGp7T7LEvVHhQ3bw _model_server_result.datetime_utc '2024-12-04 08:49:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":497}' # _entry.id 3L9J # _exptl.entry_id 3L9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3L9J _cell.length_a 83.905 _cell.length_b 83.905 _cell.length_c 149.172 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 C CYS 50 1_555 A SG CYS 14 C CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf2 A SG CYS 31 C CYS 77 1_555 A SG CYS 130 C CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 106 C CYS 152 1_555 A SG CYS 122 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 B SG CYS 61 T CYS 69 1_555 B SG CYS 93 T CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc1 D O HOH . C HOH 202 1_555 C MG MG . C MG 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 D O HOH . C HOH 210 1_555 C MG MG . C MG 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc3 D O HOH . C HOH 221 1_555 C MG MG . C MG 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 D O HOH . C HOH 245 1_555 C MG MG . C MG 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc5 D O HOH . C HOH 246 1_555 C MG MG . C MG 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc6 D O HOH . C HOH 251 1_555 C MG MG . C MG 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3L9J _atom_sites.fract_transf_matrix[1][1] 0.011918 _atom_sites.fract_transf_matrix[1][2] 0.006881 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG C 1 497 497 MG MG . D 4 HOH C 1 2 2 HOH HOH . D 4 HOH C 2 4 4 HOH HOH . D 4 HOH C 3 7 7 HOH HOH . D 4 HOH C 4 10 10 HOH HOH . D 4 HOH C 5 11 11 HOH HOH . D 4 HOH C 6 12 12 HOH HOH . D 4 HOH C 7 13 13 HOH HOH . D 4 HOH C 8 15 15 HOH HOH . D 4 HOH C 9 16 16 HOH HOH . D 4 HOH C 10 18 18 HOH HOH . D 4 HOH C 11 21 21 HOH HOH . D 4 HOH C 12 25 25 HOH HOH . D 4 HOH C 13 33 33 HOH HOH . D 4 HOH C 14 34 34 HOH HOH . D 4 HOH C 15 37 37 HOH HOH . D 4 HOH C 16 38 38 HOH HOH . D 4 HOH C 17 39 39 HOH HOH . D 4 HOH C 18 181 181 HOH HOH . D 4 HOH C 19 182 182 HOH HOH . D 4 HOH C 20 183 46 HOH HOH . D 4 HOH C 21 184 48 HOH HOH . D 4 HOH C 22 185 49 HOH HOH . D 4 HOH C 23 186 186 HOH HOH . D 4 HOH C 24 187 187 HOH HOH . D 4 HOH C 25 188 188 HOH HOH . D 4 HOH C 26 189 189 HOH HOH . D 4 HOH C 27 190 50 HOH HOH . D 4 HOH C 28 191 58 HOH HOH . D 4 HOH C 29 192 60 HOH HOH . D 4 HOH C 30 193 64 HOH HOH . D 4 HOH C 31 194 65 HOH HOH . D 4 HOH C 32 195 69 HOH HOH . D 4 HOH C 33 196 72 HOH HOH . D 4 HOH C 34 197 197 HOH HOH . D 4 HOH C 35 198 75 HOH HOH . D 4 HOH C 36 199 76 HOH HOH . D 4 HOH C 37 200 77 HOH HOH . D 4 HOH C 38 201 80 HOH HOH . D 4 HOH C 39 202 83 HOH HOH . D 4 HOH C 40 203 84 HOH HOH . D 4 HOH C 41 204 204 HOH HOH . D 4 HOH C 42 205 89 HOH HOH . D 4 HOH C 43 206 91 HOH HOH . D 4 HOH C 44 207 92 HOH HOH . D 4 HOH C 45 208 208 HOH HOH . D 4 HOH C 46 209 95 HOH HOH . D 4 HOH C 47 210 210 HOH HOH . D 4 HOH C 48 211 211 HOH HOH . D 4 HOH C 49 212 212 HOH HOH . D 4 HOH C 50 213 213 HOH HOH . D 4 HOH C 51 214 214 HOH HOH . D 4 HOH C 52 215 97 HOH HOH . D 4 HOH C 53 216 106 HOH HOH . D 4 HOH C 54 217 109 HOH HOH . D 4 HOH C 55 218 113 HOH HOH . D 4 HOH C 56 219 219 HOH HOH . D 4 HOH C 57 220 220 HOH HOH . D 4 HOH C 58 221 221 HOH HOH . D 4 HOH C 59 222 114 HOH HOH . D 4 HOH C 60 223 115 HOH HOH . D 4 HOH C 61 224 224 HOH HOH . D 4 HOH C 62 225 225 HOH HOH . D 4 HOH C 63 226 226 HOH HOH . D 4 HOH C 64 227 227 HOH HOH . D 4 HOH C 65 228 228 HOH HOH . D 4 HOH C 66 229 229 HOH HOH . D 4 HOH C 67 230 230 HOH HOH . D 4 HOH C 68 231 231 HOH HOH . D 4 HOH C 69 232 232 HOH HOH . D 4 HOH C 70 233 233 HOH HOH . D 4 HOH C 71 234 234 HOH HOH . D 4 HOH C 72 235 235 HOH HOH . D 4 HOH C 73 236 236 HOH HOH . D 4 HOH C 74 237 118 HOH HOH . D 4 HOH C 75 238 119 HOH HOH . D 4 HOH C 76 239 122 HOH HOH . D 4 HOH C 77 240 125 HOH HOH . D 4 HOH C 78 241 126 HOH HOH . D 4 HOH C 79 242 127 HOH HOH . D 4 HOH C 80 243 129 HOH HOH . D 4 HOH C 81 244 131 HOH HOH . D 4 HOH C 82 245 245 HOH HOH . D 4 HOH C 83 246 246 HOH HOH . D 4 HOH C 84 247 134 HOH HOH . D 4 HOH C 85 248 135 HOH HOH . D 4 HOH C 86 249 148 HOH HOH . D 4 HOH C 87 250 149 HOH HOH . D 4 HOH C 88 251 152 HOH HOH . D 4 HOH C 89 252 153 HOH HOH . D 4 HOH C 90 253 154 HOH HOH . D 4 HOH C 91 254 156 HOH HOH . D 4 HOH C 92 255 159 HOH HOH . D 4 HOH C 93 256 161 HOH HOH . D 4 HOH C 94 257 167 HOH HOH . D 4 HOH C 95 258 169 HOH HOH . D 4 HOH C 96 259 171 HOH HOH . D 4 HOH C 97 260 172 HOH HOH . D 4 HOH C 98 261 173 HOH HOH . D 4 HOH C 99 262 174 HOH HOH . D 4 HOH C 100 263 175 HOH HOH . D 4 HOH C 101 264 177 HOH HOH . D 4 HOH C 102 265 180 HOH HOH . D 4 HOH C 103 266 191 HOH HOH . E 4 HOH T 1 1 1 HOH HOH . E 4 HOH T 2 3 3 HOH HOH . E 4 HOH T 3 5 5 HOH HOH . E 4 HOH T 4 6 6 HOH HOH . E 4 HOH T 5 8 8 HOH HOH . E 4 HOH T 6 158 158 HOH HOH . E 4 HOH T 7 159 9 HOH HOH . E 4 HOH T 8 160 160 HOH HOH . E 4 HOH T 9 161 14 HOH HOH . E 4 HOH T 10 162 162 HOH HOH . E 4 HOH T 11 163 163 HOH HOH . E 4 HOH T 12 164 164 HOH HOH . E 4 HOH T 13 165 165 HOH HOH . E 4 HOH T 14 166 166 HOH HOH . E 4 HOH T 15 167 17 HOH HOH . E 4 HOH T 16 168 168 HOH HOH . E 4 HOH T 17 169 19 HOH HOH . E 4 HOH T 18 170 170 HOH HOH . E 4 HOH T 19 171 20 HOH HOH . E 4 HOH T 20 172 22 HOH HOH . E 4 HOH T 21 173 23 HOH HOH . E 4 HOH T 22 174 24 HOH HOH . E 4 HOH T 23 175 26 HOH HOH . E 4 HOH T 24 176 176 HOH HOH . E 4 HOH T 25 177 27 HOH HOH . E 4 HOH T 26 178 178 HOH HOH . E 4 HOH T 27 179 179 HOH HOH . E 4 HOH T 28 180 28 HOH HOH . E 4 HOH T 29 181 29 HOH HOH . E 4 HOH T 30 182 30 HOH HOH . E 4 HOH T 31 183 183 HOH HOH . E 4 HOH T 32 184 184 HOH HOH . E 4 HOH T 33 185 185 HOH HOH . E 4 HOH T 34 186 31 HOH HOH . E 4 HOH T 35 187 32 HOH HOH . E 4 HOH T 36 188 35 HOH HOH . E 4 HOH T 37 189 36 HOH HOH . E 4 HOH T 38 190 190 HOH HOH . E 4 HOH T 39 192 192 HOH HOH . E 4 HOH T 40 193 193 HOH HOH . E 4 HOH T 41 194 194 HOH HOH . E 4 HOH T 42 195 195 HOH HOH . E 4 HOH T 43 196 196 HOH HOH . E 4 HOH T 44 197 40 HOH HOH . E 4 HOH T 45 198 198 HOH HOH . E 4 HOH T 46 199 199 HOH HOH . E 4 HOH T 47 200 200 HOH HOH . E 4 HOH T 48 201 201 HOH HOH . E 4 HOH T 49 202 202 HOH HOH . E 4 HOH T 50 203 203 HOH HOH . E 4 HOH T 51 204 41 HOH HOH . E 4 HOH T 52 205 205 HOH HOH . E 4 HOH T 53 206 206 HOH HOH . E 4 HOH T 54 207 207 HOH HOH . E 4 HOH T 55 208 42 HOH HOH . E 4 HOH T 56 209 209 HOH HOH . E 4 HOH T 57 210 43 HOH HOH . E 4 HOH T 58 211 44 HOH HOH . E 4 HOH T 59 212 45 HOH HOH . E 4 HOH T 60 213 47 HOH HOH . E 4 HOH T 61 214 51 HOH HOH . E 4 HOH T 62 215 215 HOH HOH . E 4 HOH T 63 216 216 HOH HOH . E 4 HOH T 64 217 217 HOH HOH . E 4 HOH T 65 218 218 HOH HOH . E 4 HOH T 66 219 52 HOH HOH . E 4 HOH T 67 220 53 HOH HOH . E 4 HOH T 68 221 54 HOH HOH . E 4 HOH T 69 222 222 HOH HOH . E 4 HOH T 70 223 223 HOH HOH . E 4 HOH T 71 224 55 HOH HOH . E 4 HOH T 72 225 56 HOH HOH . E 4 HOH T 73 226 57 HOH HOH . E 4 HOH T 74 227 59 HOH HOH . E 4 HOH T 75 228 61 HOH HOH . E 4 HOH T 76 229 62 HOH HOH . E 4 HOH T 77 230 63 HOH HOH . E 4 HOH T 78 231 66 HOH HOH . E 4 HOH T 79 232 67 HOH HOH . E 4 HOH T 80 233 68 HOH HOH . E 4 HOH T 81 234 70 HOH HOH . E 4 HOH T 82 235 71 HOH HOH . E 4 HOH T 83 236 73 HOH HOH . E 4 HOH T 84 237 237 HOH HOH . E 4 HOH T 85 238 238 HOH HOH . E 4 HOH T 86 239 239 HOH HOH . E 4 HOH T 87 240 240 HOH HOH . E 4 HOH T 88 241 241 HOH HOH . E 4 HOH T 89 242 242 HOH HOH . E 4 HOH T 90 243 243 HOH HOH . E 4 HOH T 91 244 244 HOH HOH . E 4 HOH T 92 245 74 HOH HOH . E 4 HOH T 93 246 78 HOH HOH . E 4 HOH T 94 247 79 HOH HOH . E 4 HOH T 95 248 81 HOH HOH . E 4 HOH T 96 249 82 HOH HOH . E 4 HOH T 97 250 85 HOH HOH . E 4 HOH T 98 251 86 HOH HOH . E 4 HOH T 99 252 87 HOH HOH . E 4 HOH T 100 253 88 HOH HOH . E 4 HOH T 101 254 90 HOH HOH . E 4 HOH T 102 255 93 HOH HOH . E 4 HOH T 103 256 94 HOH HOH . E 4 HOH T 104 257 96 HOH HOH . E 4 HOH T 105 258 98 HOH HOH . E 4 HOH T 106 259 99 HOH HOH . E 4 HOH T 107 260 100 HOH HOH . E 4 HOH T 108 261 101 HOH HOH . E 4 HOH T 109 262 102 HOH HOH . E 4 HOH T 110 263 103 HOH HOH . E 4 HOH T 111 264 104 HOH HOH . E 4 HOH T 112 265 105 HOH HOH . E 4 HOH T 113 266 107 HOH HOH . E 4 HOH T 114 267 108 HOH HOH . E 4 HOH T 115 268 110 HOH HOH . E 4 HOH T 116 269 111 HOH HOH . E 4 HOH T 117 270 112 HOH HOH . E 4 HOH T 118 271 116 HOH HOH . E 4 HOH T 119 272 117 HOH HOH . E 4 HOH T 120 273 120 HOH HOH . E 4 HOH T 121 274 121 HOH HOH . E 4 HOH T 122 275 123 HOH HOH . E 4 HOH T 123 276 124 HOH HOH . E 4 HOH T 124 277 128 HOH HOH . E 4 HOH T 125 278 130 HOH HOH . E 4 HOH T 126 279 132 HOH HOH . E 4 HOH T 127 280 133 HOH HOH . E 4 HOH T 128 281 136 HOH HOH . E 4 HOH T 129 282 137 HOH HOH . E 4 HOH T 130 283 138 HOH HOH . E 4 HOH T 131 284 139 HOH HOH . E 4 HOH T 132 285 140 HOH HOH . E 4 HOH T 133 286 141 HOH HOH . E 4 HOH T 134 287 142 HOH HOH . E 4 HOH T 135 288 143 HOH HOH . E 4 HOH T 136 289 144 HOH HOH . E 4 HOH T 137 290 145 HOH HOH . E 4 HOH T 138 291 146 HOH HOH . E 4 HOH T 139 292 147 HOH HOH . E 4 HOH T 140 293 150 HOH HOH . E 4 HOH T 141 294 151 HOH HOH . E 4 HOH T 142 295 155 HOH HOH . E 4 HOH T 143 296 157 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 25.716 _atom_site.Cartn_y 69.948 _atom_site.Cartn_z 19.745 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 497 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #