data_3L9Y
#
_model_server_result.job_id            DGIIX4xH2aYnDzIKR1LmvQ 
_model_server_result.datetime_utc      '2025-02-05 06:42:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l9y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":155}' 
#
_entry.id    3L9Y 
#
_exptl.entry_id    3L9Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3L9Y 
_cell.length_a            111.493 
_cell.length_b            111.493 
_cell.length_c            39.886 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L9Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 56 A CYS 56 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf2 B SG CYS 56 B CYS 56 1_555 B SG CYS 146 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc1 A ND1 HIS 45 A HIS 45 1_555 D CU CU . A CU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc2 A NE2 HIS 47 A HIS 47 1_555 D CU CU . A CU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc3 A ND1 HIS 62 A HIS 62 1_555 C ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc4 A ND1 HIS 70 A HIS 70 1_555 C ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc5 A ND1 HIS 79 A HIS 79 1_555 C ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc6 A OD1 ASP 82 A ASP 82 1_555 C ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc7 A NE2 HIS 120 A HIS 120 1_555 D CU CU . A CU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? 
metalc ? metalc8 B ND1 HIS 45 B HIS 45 1_555 F CU CU . B CU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc9 B NE2 HIS 47 B HIS 47 1_555 F CU CU . B CU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc10 B ND1 HIS 62 B HIS 62 1_555 E ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc11 B ND1 HIS 70 B HIS 70 1_555 E ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc12 B ND1 HIS 79 B HIS 79 1_555 E ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc13 B OD1 ASP 82 B ASP 82 1_555 E ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc14 B NE2 HIS 120 B HIS 120 1_555 F CU CU . B CU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3L9Y 
_atom_sites.fract_transf_matrix[1][1]    0.008969 
_atom_sites.fract_transf_matrix[1][2]    0.005178 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010357 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025071 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 155 2 ZN ZN . 
D 3 CU A 1 156 2 CU CU . 
E 2 ZN B 1 155 1 ZN ZN . 
F 3 CU B 1 156 1 CU CU . 
G 4 HOH A 1 157 2 HOH HOH . 
G 4 HOH A 2 158 4 HOH HOH . 
G 4 HOH A 3 159 5 HOH HOH . 
G 4 HOH A 4 160 9 HOH HOH . 
G 4 HOH A 5 161 11 HOH HOH . 
G 4 HOH A 6 162 13 HOH HOH . 
G 4 HOH A 7 163 14 HOH HOH . 
G 4 HOH A 8 164 15 HOH HOH . 
G 4 HOH A 9 165 21 HOH HOH . 
G 4 HOH A 10 166 27 HOH HOH . 
G 4 HOH A 11 167 29 HOH HOH . 
G 4 HOH A 12 168 32 HOH HOH . 
G 4 HOH A 13 169 36 HOH HOH . 
G 4 HOH A 14 170 38 HOH HOH . 
G 4 HOH A 15 171 42 HOH HOH . 
G 4 HOH A 16 172 44 HOH HOH . 
G 4 HOH A 17 173 45 HOH HOH . 
G 4 HOH A 18 174 46 HOH HOH . 
G 4 HOH A 19 175 47 HOH HOH . 
G 4 HOH A 20 176 50 HOH HOH . 
G 4 HOH A 21 177 51 HOH HOH . 
G 4 HOH A 22 178 52 HOH HOH . 
G 4 HOH A 23 179 53 HOH HOH . 
G 4 HOH A 24 180 59 HOH HOH . 
G 4 HOH A 25 181 62 HOH HOH . 
G 4 HOH A 26 182 66 HOH HOH . 
G 4 HOH A 27 183 67 HOH HOH . 
G 4 HOH A 28 184 70 HOH HOH . 
G 4 HOH A 29 185 72 HOH HOH . 
G 4 HOH A 30 186 73 HOH HOH . 
G 4 HOH A 31 187 74 HOH HOH . 
G 4 HOH A 32 188 75 HOH HOH . 
G 4 HOH A 33 189 76 HOH HOH . 
G 4 HOH A 34 190 77 HOH HOH . 
G 4 HOH A 35 191 78 HOH HOH . 
G 4 HOH A 36 192 79 HOH HOH . 
G 4 HOH A 37 193 81 HOH HOH . 
G 4 HOH A 38 194 83 HOH HOH . 
G 4 HOH A 39 195 87 HOH HOH . 
G 4 HOH A 40 196 88 HOH HOH . 
G 4 HOH A 41 197 91 HOH HOH . 
G 4 HOH A 42 198 92 HOH HOH . 
G 4 HOH A 43 199 94 HOH HOH . 
G 4 HOH A 44 200 98 HOH HOH . 
G 4 HOH A 45 201 99 HOH HOH . 
G 4 HOH A 46 202 100 HOH HOH . 
G 4 HOH A 47 203 101 HOH HOH . 
G 4 HOH A 48 204 103 HOH HOH . 
G 4 HOH A 49 205 104 HOH HOH . 
G 4 HOH A 50 206 107 HOH HOH . 
G 4 HOH A 51 207 108 HOH HOH . 
G 4 HOH A 52 208 116 HOH HOH . 
G 4 HOH A 53 209 118 HOH HOH . 
G 4 HOH A 54 210 119 HOH HOH . 
G 4 HOH A 55 211 124 HOH HOH . 
G 4 HOH A 56 212 125 HOH HOH . 
G 4 HOH A 57 213 127 HOH HOH . 
G 4 HOH A 58 214 128 HOH HOH . 
G 4 HOH A 59 215 130 HOH HOH . 
G 4 HOH A 60 216 132 HOH HOH . 
G 4 HOH A 61 217 135 HOH HOH . 
G 4 HOH A 62 218 138 HOH HOH . 
G 4 HOH A 63 219 139 HOH HOH . 
G 4 HOH A 64 220 147 HOH HOH . 
G 4 HOH A 65 221 151 HOH HOH . 
G 4 HOH A 66 222 152 HOH HOH . 
H 4 HOH B 1 157 1 HOH HOH . 
H 4 HOH B 2 158 3 HOH HOH . 
H 4 HOH B 3 159 6 HOH HOH . 
H 4 HOH B 4 160 7 HOH HOH . 
H 4 HOH B 5 161 8 HOH HOH . 
H 4 HOH B 6 162 10 HOH HOH . 
H 4 HOH B 7 163 12 HOH HOH . 
H 4 HOH B 8 164 16 HOH HOH . 
H 4 HOH B 9 165 17 HOH HOH . 
H 4 HOH B 10 166 18 HOH HOH . 
H 4 HOH B 11 167 19 HOH HOH . 
H 4 HOH B 12 168 20 HOH HOH . 
H 4 HOH B 13 169 22 HOH HOH . 
H 4 HOH B 14 170 23 HOH HOH . 
H 4 HOH B 15 171 24 HOH HOH . 
H 4 HOH B 16 172 25 HOH HOH . 
H 4 HOH B 17 173 26 HOH HOH . 
H 4 HOH B 18 174 28 HOH HOH . 
H 4 HOH B 19 175 30 HOH HOH . 
H 4 HOH B 20 176 31 HOH HOH . 
H 4 HOH B 21 177 33 HOH HOH . 
H 4 HOH B 22 178 34 HOH HOH . 
H 4 HOH B 23 179 35 HOH HOH . 
H 4 HOH B 24 180 37 HOH HOH . 
H 4 HOH B 25 181 39 HOH HOH . 
H 4 HOH B 26 182 40 HOH HOH . 
H 4 HOH B 27 183 41 HOH HOH . 
H 4 HOH B 28 184 43 HOH HOH . 
H 4 HOH B 29 185 48 HOH HOH . 
H 4 HOH B 30 186 49 HOH HOH . 
H 4 HOH B 31 187 54 HOH HOH . 
H 4 HOH B 32 188 55 HOH HOH . 
H 4 HOH B 33 189 56 HOH HOH . 
H 4 HOH B 34 190 57 HOH HOH . 
H 4 HOH B 35 191 58 HOH HOH . 
H 4 HOH B 36 192 60 HOH HOH . 
H 4 HOH B 37 193 61 HOH HOH . 
H 4 HOH B 38 194 63 HOH HOH . 
H 4 HOH B 39 195 64 HOH HOH . 
H 4 HOH B 40 196 65 HOH HOH . 
H 4 HOH B 41 197 68 HOH HOH . 
H 4 HOH B 42 198 69 HOH HOH . 
H 4 HOH B 43 199 71 HOH HOH . 
H 4 HOH B 44 200 80 HOH HOH . 
H 4 HOH B 45 201 82 HOH HOH . 
H 4 HOH B 46 202 84 HOH HOH . 
H 4 HOH B 47 203 85 HOH HOH . 
H 4 HOH B 48 204 86 HOH HOH . 
H 4 HOH B 49 205 89 HOH HOH . 
H 4 HOH B 50 206 90 HOH HOH . 
H 4 HOH B 51 207 93 HOH HOH . 
H 4 HOH B 52 208 95 HOH HOH . 
H 4 HOH B 53 209 96 HOH HOH . 
H 4 HOH B 54 210 97 HOH HOH . 
H 4 HOH B 55 211 102 HOH HOH . 
H 4 HOH B 56 212 105 HOH HOH . 
H 4 HOH B 57 213 106 HOH HOH . 
H 4 HOH B 58 214 109 HOH HOH . 
H 4 HOH B 59 215 110 HOH HOH . 
H 4 HOH B 60 216 111 HOH HOH . 
H 4 HOH B 61 217 112 HOH HOH . 
H 4 HOH B 62 218 113 HOH HOH . 
H 4 HOH B 63 219 114 HOH HOH . 
H 4 HOH B 64 220 115 HOH HOH . 
H 4 HOH B 65 221 117 HOH HOH . 
H 4 HOH B 66 222 120 HOH HOH . 
H 4 HOH B 67 223 121 HOH HOH . 
H 4 HOH B 68 224 122 HOH HOH . 
H 4 HOH B 69 225 123 HOH HOH . 
H 4 HOH B 70 226 126 HOH HOH . 
H 4 HOH B 71 227 129 HOH HOH . 
H 4 HOH B 72 228 131 HOH HOH . 
H 4 HOH B 73 229 133 HOH HOH . 
H 4 HOH B 74 230 134 HOH HOH . 
H 4 HOH B 75 231 136 HOH HOH . 
H 4 HOH B 76 232 137 HOH HOH . 
H 4 HOH B 77 233 140 HOH HOH . 
H 4 HOH B 78 234 141 HOH HOH . 
H 4 HOH B 79 235 142 HOH HOH . 
H 4 HOH B 80 236 143 HOH HOH . 
H 4 HOH B 81 237 144 HOH HOH . 
H 4 HOH B 82 238 145 HOH HOH . 
H 4 HOH B 83 239 146 HOH HOH . 
H 4 HOH B 84 240 148 HOH HOH . 
H 4 HOH B 85 241 149 HOH HOH . 
H 4 HOH B 86 242 150 HOH HOH . 
H 4 HOH B 87 243 153 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               1.9 
_atom_site.Cartn_y               -42.304 
_atom_site.Cartn_z               1.077 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        22.3 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           155 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#