data_3LAI # _model_server_result.job_id Zw5LMolbh-84NXAar7SVIw _model_server_result.datetime_utc '2024-11-15 06:10:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":200}' # _entry.id 3LAI # _exptl.entry_id 3LAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LAI _cell.length_a 61.354 _cell.length_b 86.502 _cell.length_c 122.749 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,M 1 1 B,G,H,I,N 2 1 C,J,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 I N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D FE HEM . A HEM 200 1_555 E N1 IMD . A IMD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc2 D FE HEM . A HEM 200 1_555 F N1 IMD . A IMD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 I FE HEM . B HEM 200 1_555 G N1 IMD . B IMD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc4 I FE HEM . B HEM 200 1_555 H N1 IMD . B IMD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc5 L FE HEM . C HEM 200 1_555 J N1 IMD . C IMD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 3LAI _atom_sites.fract_transf_matrix[1][1] 0.016299 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HEM A 1 200 200 HEM HEM . E 3 IMD A 1 501 501 IMD IMD . F 3 IMD A 1 502 502 IMD IMD . G 3 IMD B 1 501 501 IMD IMD . H 3 IMD B 1 502 502 IMD IMD . I 2 HEM B 1 200 200 HEM HEM . J 3 IMD C 1 501 501 IMD IMD . K 3 IMD C 1 502 502 IMD IMD . L 2 HEM C 1 200 200 HEM HEM . M 4 HOH A 1 189 1 HOH HOH . M 4 HOH A 2 190 2 HOH HOH . M 4 HOH A 3 191 3 HOH HOH . M 4 HOH A 4 192 4 HOH HOH . M 4 HOH A 5 193 5 HOH HOH . M 4 HOH A 6 194 6 HOH HOH . M 4 HOH A 7 195 7 HOH HOH . M 4 HOH A 8 196 8 HOH HOH . M 4 HOH A 9 197 9 HOH HOH . M 4 HOH A 10 198 10 HOH HOH . M 4 HOH A 11 199 11 HOH HOH . M 4 HOH A 12 201 12 HOH HOH . M 4 HOH A 13 202 13 HOH HOH . M 4 HOH A 14 203 14 HOH HOH . M 4 HOH A 15 204 15 HOH HOH . M 4 HOH A 16 205 16 HOH HOH . M 4 HOH A 17 206 17 HOH HOH . M 4 HOH A 18 207 18 HOH HOH . M 4 HOH A 19 208 19 HOH HOH . M 4 HOH A 20 209 20 HOH HOH . M 4 HOH A 21 210 21 HOH HOH . M 4 HOH A 22 211 22 HOH HOH . M 4 HOH A 23 212 31 HOH HOH . M 4 HOH A 24 213 44 HOH HOH . M 4 HOH A 25 214 46 HOH HOH . M 4 HOH A 26 215 56 HOH HOH . M 4 HOH A 27 216 57 HOH HOH . M 4 HOH A 28 217 63 HOH HOH . M 4 HOH A 29 218 64 HOH HOH . M 4 HOH A 30 219 65 HOH HOH . M 4 HOH A 31 220 67 HOH HOH . M 4 HOH A 32 221 68 HOH HOH . M 4 HOH A 33 222 69 HOH HOH . M 4 HOH A 34 223 71 HOH HOH . M 4 HOH A 35 224 73 HOH HOH . M 4 HOH A 36 225 75 HOH HOH . M 4 HOH A 37 226 77 HOH HOH . M 4 HOH A 38 227 81 HOH HOH . M 4 HOH A 39 228 82 HOH HOH . M 4 HOH A 40 229 83 HOH HOH . M 4 HOH A 41 230 87 HOH HOH . M 4 HOH A 42 231 88 HOH HOH . M 4 HOH A 43 232 89 HOH HOH . M 4 HOH A 44 233 92 HOH HOH . M 4 HOH A 45 234 93 HOH HOH . M 4 HOH A 46 235 97 HOH HOH . M 4 HOH A 47 236 99 HOH HOH . M 4 HOH A 48 237 102 HOH HOH . M 4 HOH A 49 238 103 HOH HOH . M 4 HOH A 50 239 105 HOH HOH . M 4 HOH A 51 240 107 HOH HOH . M 4 HOH A 52 241 110 HOH HOH . M 4 HOH A 53 242 111 HOH HOH . M 4 HOH A 54 243 112 HOH HOH . M 4 HOH A 55 244 120 HOH HOH . N 4 HOH B 1 189 23 HOH HOH . N 4 HOH B 2 190 24 HOH HOH . N 4 HOH B 3 191 25 HOH HOH . N 4 HOH B 4 192 26 HOH HOH . N 4 HOH B 5 193 27 HOH HOH . N 4 HOH B 6 194 28 HOH HOH . N 4 HOH B 7 195 29 HOH HOH . N 4 HOH B 8 196 30 HOH HOH . N 4 HOH B 9 197 32 HOH HOH . N 4 HOH B 10 198 49 HOH HOH . N 4 HOH B 11 199 51 HOH HOH . N 4 HOH B 12 201 59 HOH HOH . N 4 HOH B 13 202 66 HOH HOH . N 4 HOH B 14 203 70 HOH HOH . N 4 HOH B 15 204 74 HOH HOH . N 4 HOH B 16 205 76 HOH HOH . N 4 HOH B 17 206 79 HOH HOH . N 4 HOH B 18 207 86 HOH HOH . N 4 HOH B 19 208 90 HOH HOH . N 4 HOH B 20 209 91 HOH HOH . N 4 HOH B 21 210 95 HOH HOH . N 4 HOH B 22 211 96 HOH HOH . N 4 HOH B 23 212 104 HOH HOH . N 4 HOH B 24 213 106 HOH HOH . N 4 HOH B 25 214 114 HOH HOH . N 4 HOH B 26 215 115 HOH HOH . N 4 HOH B 27 216 117 HOH HOH . N 4 HOH B 28 217 118 HOH HOH . O 4 HOH C 1 189 33 HOH HOH . O 4 HOH C 2 190 34 HOH HOH . O 4 HOH C 3 191 35 HOH HOH . O 4 HOH C 4 192 36 HOH HOH . O 4 HOH C 5 193 37 HOH HOH . O 4 HOH C 6 194 38 HOH HOH . O 4 HOH C 7 195 39 HOH HOH . O 4 HOH C 8 196 40 HOH HOH . O 4 HOH C 9 197 41 HOH HOH . O 4 HOH C 10 198 42 HOH HOH . O 4 HOH C 11 199 43 HOH HOH . O 4 HOH C 12 201 45 HOH HOH . O 4 HOH C 13 202 47 HOH HOH . O 4 HOH C 14 203 48 HOH HOH . O 4 HOH C 15 204 50 HOH HOH . O 4 HOH C 16 205 52 HOH HOH . O 4 HOH C 17 206 53 HOH HOH . O 4 HOH C 18 207 54 HOH HOH . O 4 HOH C 19 208 55 HOH HOH . O 4 HOH C 20 209 58 HOH HOH . O 4 HOH C 21 210 60 HOH HOH . O 4 HOH C 22 211 61 HOH HOH . O 4 HOH C 23 212 62 HOH HOH . O 4 HOH C 24 213 72 HOH HOH . O 4 HOH C 25 214 78 HOH HOH . O 4 HOH C 26 215 80 HOH HOH . O 4 HOH C 27 216 84 HOH HOH . O 4 HOH C 28 217 85 HOH HOH . O 4 HOH C 29 218 94 HOH HOH . O 4 HOH C 30 219 98 HOH HOH . O 4 HOH C 31 220 100 HOH HOH . O 4 HOH C 32 221 101 HOH HOH . O 4 HOH C 33 222 108 HOH HOH . O 4 HOH C 34 223 109 HOH HOH . O 4 HOH C 35 224 113 HOH HOH . O 4 HOH C 36 225 116 HOH HOH . O 4 HOH C 37 226 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . L 2 -25.745 15.853 -6.037 1 34.03 ? CHA HEM 200 C 1 HETATM 2 C CHB HEM . . . L 2 -26.536 16.945 -1.354 1 38.6 ? CHB HEM 200 C 1 HETATM 3 C CHC HEM . . . L 2 -25.896 21.676 -2.272 1 34.96 ? CHC HEM 200 C 1 HETATM 4 C CHD HEM . . . L 2 -23.818 20.343 -6.419 1 29.25 ? CHD HEM 200 C 1 HETATM 5 C C1A HEM . . . L 2 -25.982 15.588 -4.693 1 37.84 ? C1A HEM 200 C 1 HETATM 6 C C2A HEM . . . L 2 -26.167 14.391 -3.939 1 40.77 ? C2A HEM 200 C 1 HETATM 7 C C3A HEM . . . L 2 -26.371 14.712 -2.652 1 43.6 ? C3A HEM 200 C 1 HETATM 8 C C4A HEM . . . L 2 -26.36 16.14 -2.495 1 41.2 ? C4A HEM 200 C 1 HETATM 9 C CMA HEM . . . L 2 -26.595 13.758 -1.475 1 39.56 ? CMA HEM 200 C 1 HETATM 10 C CAA HEM . . . L 2 -26.073 12.994 -4.559 1 44.9 ? CAA HEM 200 C 1 HETATM 11 C CBA HEM . . . L 2 -27.017 11.972 -3.974 1 42.2 ? CBA HEM 200 C 1 HETATM 12 C CGA HEM . . . L 2 -27.212 10.914 -5 1 40.81 ? CGA HEM 200 C 1 HETATM 13 O O1A HEM . . . L 2 -28.33 10.773 -5.432 1 37.59 ? O1A HEM 200 C 1 HETATM 14 O O2A HEM . . . L 2 -26.272 10.228 -5.381 1 38.52 ? O2A HEM 200 C 1 HETATM 15 C C1B HEM . . . L 2 -26.56 18.318 -1.112 1 38.32 ? C1B HEM 200 C 1 HETATM 16 C C2B HEM . . . L 2 -26.975 19.078 0.026 1 37.86 ? C2B HEM 200 C 1 HETATM 17 C C3B HEM . . . L 2 -26.812 20.379 -0.244 1 37.05 ? C3B HEM 200 C 1 HETATM 18 C C4B HEM . . . L 2 -26.257 20.539 -1.545 1 41.08 ? C4B HEM 200 C 1 HETATM 19 C CMB HEM . . . L 2 -27.544 18.505 1.328 1 36.03 ? CMB HEM 200 C 1 HETATM 20 C CAB HEM . . . L 2 -27.129 21.538 0.677 1 35.99 ? CAB HEM 200 C 1 HETATM 21 C CBB HEM . . . L 2 -27.503 22.633 0.091 1 38.81 ? CBB HEM 200 C 1 HETATM 22 C C1C HEM . . . L 2 -25.194 21.828 -3.453 1 34.4 ? C1C HEM 200 C 1 HETATM 23 C C2C HEM . . . L 2 -24.632 22.979 -4.075 1 33.85 ? C2C HEM 200 C 1 HETATM 24 C C3C HEM . . . L 2 -24.053 22.591 -5.219 1 30.83 ? C3C HEM 200 C 1 HETATM 25 C C4C HEM . . . L 2 -24.229 21.184 -5.397 1 33.48 ? C4C HEM 200 C 1 HETATM 26 C CMC HEM . . . L 2 -24.734 24.388 -3.469 1 33.22 ? CMC HEM 200 C 1 HETATM 27 C CAC HEM . . . L 2 -23.321 23.42 -6.252 1 31.4 ? CAC HEM 200 C 1 HETATM 28 C CBC HEM . . . L 2 -22.33 24.208 -5.912 1 30.38 ? CBC HEM 200 C 1 HETATM 29 C C1D HEM . . . L 2 -24.295 19.132 -6.861 1 30.92 ? C1D HEM 200 C 1 HETATM 30 C C2D HEM . . . L 2 -24.353 18.606 -8.183 1 33.54 ? C2D HEM 200 C 1 HETATM 31 C C3D HEM . . . L 2 -24.963 17.189 -8.059 1 31.97 ? C3D HEM 200 C 1 HETATM 32 C C4D HEM . . . L 2 -25.224 16.984 -6.677 1 35.65 ? C4D HEM 200 C 1 HETATM 33 C CMD HEM . . . L 2 -23.904 19.332 -9.453 1 29.41 ? CMD HEM 200 C 1 HETATM 34 C CAD HEM . . . L 2 -25.269 16.192 -9.162 1 31.01 ? CAD HEM 200 C 1 HETATM 35 C CBD HEM . . . L 2 -24.363 14.99 -9.064 1 32.49 ? CBD HEM 200 C 1 HETATM 36 C CGD HEM . . . L 2 -23.191 15.152 -9.962 1 33.17 ? CGD HEM 200 C 1 HETATM 37 O O1D HEM . . . L 2 -23.116 16.183 -10.642 1 34.12 ? O1D HEM 200 C 1 HETATM 38 O O2D HEM . . . L 2 -22.342 14.27 -9.972 1 32.52 ? O2D HEM 200 C 1 HETATM 39 N NA HEM . . . L 2 -26.138 16.513 -3.753 1 37.95 ? NA HEM 200 C 1 HETATM 40 N NB HEM . . . L 2 -26.158 19.289 -1.925 1 36.66 ? NB HEM 200 C 1 HETATM 41 N NC HEM . . . L 2 -24.912 20.857 -4.307 1 30.6 ? NC HEM 200 C 1 HETATM 42 N ND HEM . . . L 2 -24.777 18.128 -6.105 1 30.91 ? ND HEM 200 C 1 HETATM 43 FE FE HEM . . . L 2 -25.479 18.675 -4.002 1 31.75 ? FE HEM 200 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 614 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #