data_3LAL # _model_server_result.job_id NONvpgZJlkZnPX56v6GHrQ _model_server_result.datetime_utc '2024-12-23 11:36:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":561}' # _entry.id 3LAL # _exptl.entry_id 3LAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 325.362 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{[3-ethyl-5-(1-methylethyl)-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl]carbonyl}-5-methylbenzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LAL _cell.length_a 118.151 _cell.length_b 154.124 _cell.length_c 153.956 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H19 N3 O3' _chem_comp.formula_weight 325.362 _chem_comp.id KRV _chem_comp.mon_nstd_flag . _chem_comp.name 3-{[3-ethyl-5-(1-methylethyl)-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl]carbonyl}-5-methylbenzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N8 C1 KRV sing 173 n n C2 C1 KRV sing 174 n n C1 H1 KRV sing 175 n n C1 H1A KRV sing 176 n n C2 H2 KRV sing 177 n n C2 H2A KRV sing 178 n n C2 H2B KRV sing 179 n n C9 N8 KRV sing 180 n n N8 C13 KRV sing 181 n n N10 C9 KRV sing 182 n n O29 C9 KRV doub 183 n n N10 C11 KRV sing 184 n n N10 HN10 KRV sing 185 n n O28 C11 KRV doub 186 n n C11 C12 KRV sing 187 n n C12 C25 KRV sing 188 n n C12 C13 KRV doub 189 n n C13 C14 KRV sing 190 n n C14 O15 KRV doub 191 n n C14 C16 KRV sing 192 n n C16 C23 KRV doub 193 n y C16 C17 KRV sing 194 n y C17 C18 KRV doub 195 n y C17 H17 KRV sing 196 n n C18 C21 KRV sing 197 n y C18 C19 KRV sing 198 n n C19 N20 KRV trip 199 n n C22 C21 KRV doub 200 n y C21 H21 KRV sing 201 n n C23 C22 KRV sing 202 n y C22 C24 KRV sing 203 n n C23 H23 KRV sing 204 n n C24 H24 KRV sing 205 n n C24 H24A KRV sing 206 n n C24 H24B KRV sing 207 n n C27 C25 KRV sing 208 n n C25 C26 KRV sing 209 n n C25 H25 KRV sing 210 n n C26 H26 KRV sing 211 n n C26 H26A KRV sing 212 n n C26 H26B KRV sing 213 n n C27 H27 KRV sing 214 n n C27 H27A KRV sing 215 n n C27 H27B KRV sing 216 n n # _atom_sites.entry_id 3LAL _atom_sites.fract_transf_matrix[1][1] 0.008464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KRV A 1 561 1 KRV KRV . D 3 SO4 A 1 562 1 SO4 SO4 . E 3 SO4 A 1 563 2 SO4 SO4 . F 3 SO4 A 1 564 3 SO4 SO4 . G 3 SO4 A 1 565 4 SO4 SO4 . H 3 SO4 B 1 561 5 SO4 SO4 . I 4 HOH A 1 566 3 HOH WAT . I 4 HOH A 2 567 4 HOH WAT . I 4 HOH A 3 568 5 HOH WAT . I 4 HOH A 4 569 8 HOH WAT . I 4 HOH A 5 570 11 HOH WAT . I 4 HOH A 6 571 13 HOH WAT . I 4 HOH A 7 572 16 HOH WAT . I 4 HOH A 8 573 17 HOH WAT . I 4 HOH A 9 574 19 HOH WAT . I 4 HOH A 10 575 22 HOH WAT . I 4 HOH A 11 576 23 HOH WAT . I 4 HOH A 12 577 24 HOH WAT . I 4 HOH A 13 578 25 HOH WAT . I 4 HOH A 14 579 26 HOH WAT . I 4 HOH A 15 580 28 HOH WAT . I 4 HOH A 16 581 33 HOH WAT . I 4 HOH A 17 582 37 HOH WAT . I 4 HOH A 18 583 38 HOH WAT . I 4 HOH A 19 584 40 HOH WAT . I 4 HOH A 20 585 41 HOH WAT . I 4 HOH A 21 586 43 HOH WAT . I 4 HOH A 22 587 44 HOH WAT . I 4 HOH A 23 588 45 HOH WAT . I 4 HOH A 24 589 51 HOH WAT . I 4 HOH A 25 590 52 HOH WAT . I 4 HOH A 26 591 55 HOH WAT . I 4 HOH A 27 592 59 HOH WAT . I 4 HOH A 28 593 60 HOH WAT . I 4 HOH A 29 594 61 HOH WAT . I 4 HOH A 30 595 62 HOH WAT . I 4 HOH A 31 596 63 HOH WAT . I 4 HOH A 32 597 65 HOH WAT . I 4 HOH A 33 598 66 HOH WAT . I 4 HOH A 34 599 72 HOH WAT . I 4 HOH A 35 600 75 HOH WAT . I 4 HOH A 36 601 76 HOH WAT . I 4 HOH A 37 602 77 HOH WAT . I 4 HOH A 38 603 78 HOH WAT . I 4 HOH A 39 604 79 HOH WAT . I 4 HOH A 40 605 80 HOH WAT . I 4 HOH A 41 606 81 HOH WAT . I 4 HOH A 42 607 82 HOH WAT . I 4 HOH A 43 608 83 HOH WAT . I 4 HOH A 44 609 85 HOH WAT . I 4 HOH A 45 610 86 HOH WAT . I 4 HOH A 46 611 87 HOH WAT . I 4 HOH A 47 612 88 HOH WAT . I 4 HOH A 48 613 90 HOH WAT . I 4 HOH A 49 614 94 HOH WAT . I 4 HOH A 50 615 99 HOH WAT . I 4 HOH A 51 616 100 HOH WAT . I 4 HOH A 52 617 101 HOH WAT . I 4 HOH A 53 618 102 HOH WAT . I 4 HOH A 54 619 103 HOH WAT . I 4 HOH A 55 620 104 HOH WAT . I 4 HOH A 56 621 105 HOH WAT . I 4 HOH A 57 622 107 HOH WAT . I 4 HOH A 58 623 108 HOH WAT . I 4 HOH A 59 624 111 HOH WAT . I 4 HOH A 60 625 112 HOH WAT . I 4 HOH A 61 626 113 HOH WAT . I 4 HOH A 62 627 114 HOH WAT . I 4 HOH A 63 628 115 HOH WAT . I 4 HOH A 64 629 117 HOH WAT . I 4 HOH A 65 630 118 HOH WAT . I 4 HOH A 66 631 119 HOH WAT . I 4 HOH A 67 632 120 HOH WAT . I 4 HOH A 68 633 121 HOH WAT . I 4 HOH A 69 634 122 HOH WAT . J 4 HOH B 1 562 1 HOH WAT . J 4 HOH B 2 563 2 HOH WAT . J 4 HOH B 3 564 6 HOH WAT . J 4 HOH B 4 565 7 HOH WAT . J 4 HOH B 5 566 9 HOH WAT . J 4 HOH B 6 567 10 HOH WAT . J 4 HOH B 7 568 12 HOH WAT . J 4 HOH B 8 569 14 HOH WAT . J 4 HOH B 9 570 15 HOH WAT . J 4 HOH B 10 571 18 HOH WAT . J 4 HOH B 11 572 20 HOH WAT . J 4 HOH B 12 573 21 HOH WAT . J 4 HOH B 13 574 27 HOH WAT . J 4 HOH B 14 575 29 HOH WAT . J 4 HOH B 15 576 30 HOH WAT . J 4 HOH B 16 577 31 HOH WAT . J 4 HOH B 17 578 32 HOH WAT . J 4 HOH B 18 579 34 HOH WAT . J 4 HOH B 19 580 35 HOH WAT . J 4 HOH B 20 581 36 HOH WAT . J 4 HOH B 21 582 39 HOH WAT . J 4 HOH B 22 583 42 HOH WAT . J 4 HOH B 23 584 46 HOH WAT . J 4 HOH B 24 585 47 HOH WAT . J 4 HOH B 25 586 48 HOH WAT . J 4 HOH B 26 587 49 HOH WAT . J 4 HOH B 27 588 50 HOH WAT . J 4 HOH B 28 589 53 HOH WAT . J 4 HOH B 29 590 54 HOH WAT . J 4 HOH B 30 591 56 HOH WAT . J 4 HOH B 31 592 57 HOH WAT . J 4 HOH B 32 593 58 HOH WAT . J 4 HOH B 33 594 64 HOH WAT . J 4 HOH B 34 595 67 HOH WAT . J 4 HOH B 35 596 68 HOH WAT . J 4 HOH B 36 597 69 HOH WAT . J 4 HOH B 37 598 70 HOH WAT . J 4 HOH B 38 599 71 HOH WAT . J 4 HOH B 39 600 73 HOH WAT . J 4 HOH B 40 601 74 HOH WAT . J 4 HOH B 41 602 84 HOH WAT . J 4 HOH B 42 603 89 HOH WAT . J 4 HOH B 43 604 91 HOH WAT . J 4 HOH B 44 605 92 HOH WAT . J 4 HOH B 45 606 93 HOH WAT . J 4 HOH B 46 607 95 HOH WAT . J 4 HOH B 47 608 96 HOH WAT . J 4 HOH B 48 609 97 HOH WAT . J 4 HOH B 49 610 98 HOH WAT . J 4 HOH B 50 611 106 HOH WAT . J 4 HOH B 51 612 109 HOH WAT . J 4 HOH B 52 613 110 HOH WAT . J 4 HOH B 53 614 116 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KRV . . . C 2 6.636 11.773 16.636 1 58.56 ? C1 KRV 561 A 1 HETATM 2 C C2 KRV . . . C 2 6.19 10.334 16.255 1 61.48 ? C2 KRV 561 A 1 HETATM 3 N N8 KRV . . . C 2 7.853 12.233 15.829 1 59.28 ? N8 KRV 561 A 1 HETATM 4 C C9 KRV . . . C 2 7.607 12.729 14.595 1 58.5 ? C9 KRV 561 A 1 HETATM 5 N N10 KRV . . . C 2 8.639 13.169 13.817 1 56.34 ? N10 KRV 561 A 1 HETATM 6 C C11 KRV . . . C 2 9.95 13.134 14.188 1 57.28 ? C11 KRV 561 A 1 HETATM 7 C C12 KRV . . . C 2 10.301 12.576 15.565 1 57.67 ? C12 KRV 561 A 1 HETATM 8 C C13 KRV . . . C 2 9.184 12.14 16.32 1 60.4 ? C13 KRV 561 A 1 HETATM 9 C C14 KRV . . . C 2 9.326 11.557 17.712 1 61.31 ? C14 KRV 561 A 1 HETATM 10 O O15 KRV . . . C 2 9.099 10.341 17.773 1 66.31 ? O15 KRV 561 A 1 HETATM 11 C C16 KRV . . . C 2 9.678 12.299 18.993 1 60.17 ? C16 KRV 561 A 1 HETATM 12 C C17 KRV . . . C 2 9.715 11.523 20.194 1 60.17 ? C17 KRV 561 A 1 HETATM 13 C C18 KRV . . . C 2 10.011 12.112 21.44 1 63.17 ? C18 KRV 561 A 1 HETATM 14 C C19 KRV . . . C 2 10.003 11.253 22.604 1 66.11 ? C19 KRV 561 A 1 HETATM 15 N N20 KRV . . . C 2 9.989 10.535 23.519 1 67.13 ? N20 KRV 561 A 1 HETATM 16 C C21 KRV . . . C 2 10.311 13.536 21.513 1 60.74 ? C21 KRV 561 A 1 HETATM 17 C C22 KRV . . . C 2 10.29 14.335 20.3 1 60.33 ? C22 KRV 561 A 1 HETATM 18 C C23 KRV . . . C 2 9.975 13.704 19.048 1 59.35 ? C23 KRV 561 A 1 HETATM 19 C C24 KRV . . . C 2 10.602 15.837 20.313 1 59.11 ? C24 KRV 561 A 1 HETATM 20 C C25 KRV . . . C 2 11.766 12.507 16.027 1 56.05 ? C25 KRV 561 A 1 HETATM 21 C C26 KRV . . . C 2 12.318 13.948 16.225 1 55.18 ? C26 KRV 561 A 1 HETATM 22 C C27 KRV . . . C 2 12.668 11.704 15.037 1 56.07 ? C27 KRV 561 A 1 HETATM 23 O O28 KRV . . . C 2 10.818 13.556 13.413 1 56.83 ? O28 KRV 561 A 1 HETATM 24 O O29 KRV . . . C 2 6.463 12.816 14.136 1 61.5 ? O29 KRV 561 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #