data_3LAM # _model_server_result.job_id RtWV7qdPydCZpFwsfuZBZg _model_server_result.datetime_utc '2024-12-23 11:14:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":561}' # _entry.id 3LAM # _exptl.entry_id 3LAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.388 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-methyl-5-{[5-(1-methylethyl)-2,6-dioxo-3-propyl-1,2,3,6-tetrahydropyrimidin-4-yl]carbonyl}benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LAM _cell.length_a 119.641 _cell.length_b 154.473 _cell.length_c 153.812 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H21 N3 O3' _chem_comp.formula_weight 339.388 _chem_comp.id KRP _chem_comp.mon_nstd_flag . _chem_comp.name 3-methyl-5-{[5-(1-methylethyl)-2,6-dioxo-3-propyl-1,2,3,6-tetrahydropyrimidin-4-yl]carbonyl}benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 KRP sing 173 n n C1 C4 KRP sing 174 n n C1 H1 KRP sing 175 n n C1 H1A KRP sing 176 n n C2 H2 KRP sing 177 n n C2 H2A KRP sing 178 n n C2 H2B KRP sing 179 n n N5 C4 KRP sing 180 n n C4 H4 KRP sing 181 n n C4 H4A KRP sing 182 n n C25 N5 KRP sing 183 n n N5 C6 KRP sing 184 n n C18 C6 KRP doub 185 n n C6 C7 KRP sing 186 n n C7 O8 KRP doub 187 n n C7 C9 KRP sing 188 n n C17 C9 KRP doub 189 n y C9 C10 KRP sing 190 n y C10 C11 KRP doub 191 n y C10 H10 KRP sing 192 n n C14 C11 KRP sing 193 n y C11 C12 KRP sing 194 n n C12 N13 KRP trip 195 n n C15 C14 KRP doub 196 n y C14 H14 KRP sing 197 n n C17 C15 KRP sing 198 n y C16 C15 KRP sing 199 n n C16 H16 KRP sing 200 n n C16 H16A KRP sing 201 n n C16 H16B KRP sing 202 n n C17 H17 KRP sing 203 n n C22 C18 KRP sing 204 n n C18 C19 KRP sing 205 n n C21 C19 KRP sing 206 n n C20 C19 KRP sing 207 n n C19 H19 KRP sing 208 n n C20 H20 KRP sing 209 n n C20 H20A KRP sing 210 n n C20 H20B KRP sing 211 n n C21 H21 KRP sing 212 n n C21 H21A KRP sing 213 n n C21 H21B KRP sing 214 n n O23 C22 KRP doub 215 n n N24 C22 KRP sing 216 n n N24 C25 KRP sing 217 n n N24 HN24 KRP sing 218 n n O26 C25 KRP doub 219 n n # _atom_sites.entry_id 3LAM _atom_sites.fract_transf_matrix[1][1] 0.008358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KRP A 1 561 561 KRP KRP . D 3 SO4 A 1 562 562 SO4 SO4 . E 3 SO4 A 1 563 563 SO4 SO4 . F 3 SO4 A 1 564 564 SO4 SO4 . G 3 SO4 A 1 565 565 SO4 SO4 . H 3 SO4 B 1 561 561 SO4 SO4 . I 4 HOH A 1 566 566 HOH HOH . I 4 HOH A 2 567 567 HOH HOH . I 4 HOH A 3 568 568 HOH HOH . I 4 HOH A 4 569 569 HOH HOH . I 4 HOH A 5 570 570 HOH HOH . I 4 HOH A 6 571 571 HOH HOH . I 4 HOH A 7 572 572 HOH HOH . I 4 HOH A 8 573 573 HOH HOH . I 4 HOH A 9 574 574 HOH HOH . I 4 HOH A 10 575 575 HOH HOH . I 4 HOH A 11 576 576 HOH HOH . I 4 HOH A 12 577 577 HOH HOH . I 4 HOH A 13 578 578 HOH HOH . I 4 HOH A 14 579 579 HOH HOH . I 4 HOH A 15 580 580 HOH HOH . I 4 HOH A 16 581 581 HOH HOH . I 4 HOH A 17 582 582 HOH HOH . I 4 HOH A 18 583 583 HOH HOH . I 4 HOH A 19 584 584 HOH HOH . I 4 HOH A 20 585 585 HOH HOH . I 4 HOH A 21 586 586 HOH HOH . I 4 HOH A 22 587 587 HOH HOH . I 4 HOH A 23 588 588 HOH HOH . I 4 HOH A 24 589 589 HOH HOH . I 4 HOH A 25 590 590 HOH HOH . I 4 HOH A 26 591 591 HOH HOH . I 4 HOH A 27 592 592 HOH HOH . I 4 HOH A 28 593 593 HOH HOH . I 4 HOH A 29 594 594 HOH HOH . I 4 HOH A 30 595 595 HOH HOH . I 4 HOH A 31 596 596 HOH HOH . I 4 HOH A 32 597 597 HOH HOH . I 4 HOH A 33 598 598 HOH HOH . I 4 HOH A 34 599 599 HOH HOH . I 4 HOH A 35 600 600 HOH HOH . I 4 HOH A 36 601 601 HOH HOH . I 4 HOH A 37 602 602 HOH HOH . I 4 HOH A 38 603 603 HOH HOH . I 4 HOH A 39 604 604 HOH HOH . I 4 HOH A 40 605 605 HOH HOH . I 4 HOH A 41 606 606 HOH HOH . I 4 HOH A 42 607 607 HOH HOH . I 4 HOH A 43 608 608 HOH HOH . I 4 HOH A 44 609 609 HOH HOH . I 4 HOH A 45 610 610 HOH HOH . I 4 HOH A 46 611 611 HOH HOH . I 4 HOH A 47 612 612 HOH HOH . I 4 HOH A 48 613 613 HOH HOH . I 4 HOH A 49 614 614 HOH HOH . I 4 HOH A 50 615 615 HOH HOH . I 4 HOH A 51 616 616 HOH HOH . I 4 HOH A 52 617 617 HOH HOH . I 4 HOH A 53 618 618 HOH HOH . I 4 HOH A 54 619 619 HOH HOH . I 4 HOH A 55 620 620 HOH HOH . I 4 HOH A 56 621 621 HOH HOH . I 4 HOH A 57 622 622 HOH HOH . I 4 HOH A 58 623 623 HOH HOH . J 4 HOH B 1 562 562 HOH HOH . J 4 HOH B 2 563 563 HOH HOH . J 4 HOH B 3 564 564 HOH HOH . J 4 HOH B 4 565 565 HOH HOH . J 4 HOH B 5 566 566 HOH HOH . J 4 HOH B 6 567 567 HOH HOH . J 4 HOH B 7 568 568 HOH HOH . J 4 HOH B 8 569 569 HOH HOH . J 4 HOH B 9 570 570 HOH HOH . J 4 HOH B 10 571 571 HOH HOH . J 4 HOH B 11 572 572 HOH HOH . J 4 HOH B 12 573 573 HOH HOH . J 4 HOH B 13 574 574 HOH HOH . J 4 HOH B 14 575 575 HOH HOH . J 4 HOH B 15 576 576 HOH HOH . J 4 HOH B 16 577 577 HOH HOH . J 4 HOH B 17 578 578 HOH HOH . J 4 HOH B 18 579 579 HOH HOH . J 4 HOH B 19 580 580 HOH HOH . J 4 HOH B 20 581 581 HOH HOH . J 4 HOH B 21 582 582 HOH HOH . J 4 HOH B 22 583 583 HOH HOH . J 4 HOH B 23 584 584 HOH HOH . J 4 HOH B 24 585 585 HOH HOH . J 4 HOH B 25 586 586 HOH HOH . J 4 HOH B 26 587 587 HOH HOH . J 4 HOH B 27 588 588 HOH HOH . J 4 HOH B 28 589 589 HOH HOH . J 4 HOH B 29 590 590 HOH HOH . J 4 HOH B 30 591 591 HOH HOH . J 4 HOH B 31 592 592 HOH HOH . J 4 HOH B 32 593 593 HOH HOH . J 4 HOH B 33 594 594 HOH HOH . J 4 HOH B 34 595 595 HOH HOH . J 4 HOH B 35 596 596 HOH HOH . J 4 HOH B 36 597 597 HOH HOH . J 4 HOH B 37 598 598 HOH HOH . J 4 HOH B 38 599 599 HOH HOH . J 4 HOH B 39 600 600 HOH HOH . J 4 HOH B 40 601 601 HOH HOH . J 4 HOH B 41 602 602 HOH HOH . J 4 HOH B 42 603 603 HOH HOH . J 4 HOH B 43 604 604 HOH HOH . J 4 HOH B 44 605 605 HOH HOH . J 4 HOH B 45 606 606 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KRP . . . C 2 6.306 10.609 15.501 1 80.73 ? C1 KRP 561 A 1 HETATM 2 C C2 KRP . . . C 2 6.896 9.3 16.039 1 80.01 ? C2 KRP 561 A 1 HETATM 3 C C4 KRP . . . C 2 7.005 11.898 16.092 1 79.12 ? C4 KRP 561 A 1 HETATM 4 N N5 KRP . . . C 2 8.309 12.34 15.324 1 77.44 ? N5 KRP 561 A 1 HETATM 5 C C6 KRP . . . C 2 9.656 12.291 15.925 1 76.28 ? C6 KRP 561 A 1 HETATM 6 C C7 KRP . . . C 2 9.679 11.731 17.384 1 76.06 ? C7 KRP 561 A 1 HETATM 7 O O8 KRP . . . C 2 9.455 10.542 17.513 1 78.05 ? O8 KRP 561 A 1 HETATM 8 C C9 KRP . . . C 2 9.936 12.597 18.647 1 74.5 ? C9 KRP 561 A 1 HETATM 9 C C10 KRP . . . C 2 9.888 11.98 19.969 1 73.28 ? C10 KRP 561 A 1 HETATM 10 C C11 KRP . . . C 2 10.113 12.804 21.15 1 75.07 ? C11 KRP 561 A 1 HETATM 11 C C12 KRP . . . C 2 10.049 12.246 22.433 1 76.53 ? C12 KRP 561 A 1 HETATM 12 N N13 KRP . . . C 2 9.94 11.802 23.489 1 78.29 ? N13 KRP 561 A 1 HETATM 13 C C14 KRP . . . C 2 10.392 14.213 21.04 1 74.42 ? C14 KRP 561 A 1 HETATM 14 C C15 KRP . . . C 2 10.452 14.842 19.753 1 73.57 ? C15 KRP 561 A 1 HETATM 15 C C16 KRP . . . C 2 10.749 16.334 19.634 1 74.19 ? C16 KRP 561 A 1 HETATM 16 C C17 KRP . . . C 2 10.221 14.046 18.563 1 74.18 ? C17 KRP 561 A 1 HETATM 17 C C18 KRP . . . C 2 10.81 12.696 15.191 1 75.88 ? C18 KRP 561 A 1 HETATM 18 C C19 KRP . . . C 2 12.288 12.67 15.738 1 76.3 ? C19 KRP 561 A 1 HETATM 19 C C20 KRP . . . C 2 12.939 14.104 15.736 1 74.84 ? C20 KRP 561 A 1 HETATM 20 C C21 KRP . . . C 2 13.167 11.706 14.871 1 76.03 ? C21 KRP 561 A 1 HETATM 21 C C22 KRP . . . C 2 10.47 13.211 13.746 1 75.67 ? C22 KRP 561 A 1 HETATM 22 O O23 KRP . . . C 2 11.311 13.608 12.969 1 75.36 ? O23 KRP 561 A 1 HETATM 23 N N24 KRP . . . C 2 9.193 13.221 13.315 1 77.27 ? N24 KRP 561 A 1 HETATM 24 C C25 KRP . . . C 2 8.116 12.82 14.051 1 77.9 ? C25 KRP 561 A 1 HETATM 25 O O26 KRP . . . C 2 6.985 12.891 13.498 1 78.23 ? O26 KRP 561 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #