data_3LAW
#
_model_server_result.job_id            gT6zaZXHPUHUJUbu5Np8CA 
_model_server_result.datetime_utc      '2024-10-18 17:23:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3law 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1400}' 
#
_entry.id    3LAW 
#
_exptl.entry_id    3LAW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         71.24 
_cell.angle_beta          85.97 
_cell.angle_gamma         85.91 
_cell.entry_id            3LAW 
_cell.length_a            35.554 
_cell.length_b            89.335 
_cell.length_c            89.378 
_cell.Z_PDB               5 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LAW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,G,P 1 1 
B,H,I,Q 2 1 
C,J,K,R 3 1 
D,L,M,S 4 1 
E,N,O,T 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 22 A THR 22 1_555 F MG MG . A MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc2 A OG1 THR 40 A THR 40 1_555 F MG MG . A MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc3 A OD2 ASP 63 A ASP 63 1_555 F MG MG . A MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
metalc ? metalc4 A O THR 64 A THR 64 1_555 F MG MG . A MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? 
metalc ? metalc5 G O2G GNP . A GNP 1400 1_555 F MG MG . A MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc6 G O2B GNP . A GNP 1400 1_555 F MG MG . A MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc7 B OG1 THR 22 B THR 22 1_555 H MG MG . B MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? 
metalc ? metalc8 B OG1 THR 40 B THR 40 1_555 H MG MG . B MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc9 I O2G GNP . B GNP 1400 1_555 H MG MG . B MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? 
metalc ? metalc10 I O2B GNP . B GNP 1400 1_555 H MG MG . B MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc11 C OG1 THR 22 C THR 22 1_555 J MG MG . C MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc12 C OG1 THR 40 C THR 40 1_555 J MG MG . C MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc13 K O2G GNP . C GNP 1400 1_555 J MG MG . C MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc14 K O2B GNP . C GNP 1400 1_555 J MG MG . C MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc15 D OG1 THR 22 D THR 22 1_555 L MG MG . D MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc16 D OG1 THR 40 D THR 40 1_555 L MG MG . D MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc17 M O2G GNP . D GNP 1400 1_555 L MG MG . D MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
metalc ? metalc18 M O2B GNP . D GNP 1400 1_555 L MG MG . D MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc19 E OG1 THR 22 E THR 22 1_555 N MG MG . E MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc20 E OG1 THR 40 E THR 40 1_555 N MG MG . E MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc21 O O2G GNP . E GNP 1400 1_555 N MG MG . E MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
metalc ? metalc22 O O2B GNP . E GNP 1400 1_555 N MG MG . E MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     3LAW 
_atom_sites.fract_transf_matrix[1][1]    0.028126 
_atom_sites.fract_transf_matrix[1][2]    -0.002011 
_atom_sites.fract_transf_matrix[1][3]    -0.001415 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011222 
_atom_sites.fract_transf_matrix[2][3]    -0.003767 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011831 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 MG A 1 1401 1401 MG MG . 
G 3 GNP A 1 1400 1400 GNP GNP . 
H 2 MG B 1 1401 1401 MG MG . 
I 3 GNP B 1 1400 1400 GNP GNP . 
J 2 MG C 1 1401 1401 MG MG . 
K 3 GNP C 1 1400 1400 GNP GNP . 
L 2 MG D 1 1401 1401 MG MG . 
M 3 GNP D 1 1400 1400 GNP GNP . 
N 2 MG E 1 1401 1401 MG MG . 
O 3 GNP E 1 1400 1400 GNP GNP . 
P 4 HOH A 1 208 8 HOH HOH . 
P 4 HOH A 2 209 11 HOH HOH . 
P 4 HOH A 3 210 13 HOH HOH . 
P 4 HOH A 4 211 15 HOH HOH . 
P 4 HOH A 5 212 18 HOH HOH . 
P 4 HOH A 6 213 26 HOH HOH . 
P 4 HOH A 7 214 35 HOH HOH . 
P 4 HOH A 8 215 38 HOH HOH . 
P 4 HOH A 9 216 42 HOH HOH . 
P 4 HOH A 10 217 43 HOH HOH . 
Q 4 HOH B 1 208 4 HOH HOH . 
Q 4 HOH B 2 209 7 HOH HOH . 
Q 4 HOH B 3 210 19 HOH HOH . 
Q 4 HOH B 4 211 21 HOH HOH . 
Q 4 HOH B 5 212 22 HOH HOH . 
Q 4 HOH B 6 213 23 HOH HOH . 
Q 4 HOH B 7 214 25 HOH HOH . 
Q 4 HOH B 8 215 28 HOH HOH . 
Q 4 HOH B 9 216 30 HOH HOH . 
Q 4 HOH B 10 217 31 HOH HOH . 
Q 4 HOH B 11 218 36 HOH HOH . 
Q 4 HOH B 12 219 37 HOH HOH . 
Q 4 HOH B 13 220 40 HOH HOH . 
Q 4 HOH B 14 221 44 HOH HOH . 
R 4 HOH C 1 208 6 HOH HOH . 
R 4 HOH C 2 209 12 HOH HOH . 
R 4 HOH C 3 210 17 HOH HOH . 
R 4 HOH C 4 211 24 HOH HOH . 
R 4 HOH C 5 212 29 HOH HOH . 
R 4 HOH C 6 213 32 HOH HOH . 
S 4 HOH D 1 208 9 HOH HOH . 
S 4 HOH D 2 209 10 HOH HOH . 
S 4 HOH D 3 210 20 HOH HOH . 
S 4 HOH D 4 211 33 HOH HOH . 
S 4 HOH D 5 212 34 HOH HOH . 
S 4 HOH D 6 213 45 HOH HOH . 
T 4 HOH E 1 208 5 HOH HOH . 
T 4 HOH E 2 209 14 HOH HOH . 
T 4 HOH E 3 210 16 HOH HOH . 
T 4 HOH E 4 211 27 HOH HOH . 
T 4 HOH E 5 212 39 HOH HOH . 
T 4 HOH E 6 213 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . O 3 4.768 32.167 -5.705 1 33.89 ? PG GNP 1400 E 1 
HETATM 2 O O1G GNP . . . O 3 5.697 31.895 -4.534 1 31.39 ? O1G GNP 1400 E 1 
HETATM 3 O O2G GNP . . . O 3 3.484 31.319 -5.747 1 32.02 ? O2G GNP 1400 E 1 
HETATM 4 O O3G GNP . . . O 3 5.679 32.095 -6.92 1 32.2 ? O3G GNP 1400 E 1 
HETATM 5 N N3B GNP . . . O 3 4.286 33.708 -5.648 1 29.01 ? N3B GNP 1400 E 1 
HETATM 6 P PB GNP . . . O 3 3.178 34.331 -6.624 1 22.8 ? PB GNP 1400 E 1 
HETATM 7 O O1B GNP . . . O 3 3.796 35.128 -7.703 1 21.01 ? O1B GNP 1400 E 1 
HETATM 8 O O2B GNP . . . O 3 2.273 33.209 -6.996 1 22.64 ? O2B GNP 1400 E 1 
HETATM 9 O O3A GNP . . . O 3 2.373 35.313 -5.809 1 22.11 ? O3A GNP 1400 E 1 
HETATM 10 P PA GNP . . . O 3 1.113 34.843 -5.118 1 22.89 ? PA GNP 1400 E 1 
HETATM 11 O O1A GNP . . . O 3 0.011 34.952 -6.121 1 20.56 ? O1A GNP 1400 E 1 
HETATM 12 O O2A GNP . . . O 3 1.377 33.539 -4.453 1 24.57 ? O2A GNP 1400 E 1 
HETATM 13 O O5' GNP . . . O 3 0.759 35.826 -3.933 1 24.25 ? O5' GNP 1400 E 1 
HETATM 14 C C5' GNP . . . O 3 1.775 36.535 -3.194 1 25.04 ? C5' GNP 1400 E 1 
HETATM 15 C C4' GNP . . . O 3 1.145 37.483 -2.184 1 25.88 ? C4' GNP 1400 E 1 
HETATM 16 O O4' GNP . . . O 3 0.639 38.68 -2.843 1 26.78 ? O4' GNP 1400 E 1 
HETATM 17 C C3' GNP . . . O 3 -0.058 36.928 -1.432 1 26.54 ? C3' GNP 1400 E 1 
HETATM 18 O O3' GNP . . . O 3 -0.131 37.531 -0.147 1 28.26 ? O3' GNP 1400 E 1 
HETATM 19 C C2' GNP . . . O 3 -1.234 37.381 -2.29 1 26.51 ? C2' GNP 1400 E 1 
HETATM 20 O O2' GNP . . . O 3 -2.424 37.388 -1.535 1 26.1 ? O2' GNP 1400 E 1 
HETATM 21 C C1' GNP . . . O 3 -0.772 38.788 -2.667 1 27.48 ? C1' GNP 1400 E 1 
HETATM 22 N N9 GNP . . . O 3 -1.286 39.344 -3.92 1 28.19 ? N9 GNP 1400 E 1 
HETATM 23 C C8 GNP . . . O 3 -1.178 38.792 -5.177 1 29.18 ? C8 GNP 1400 E 1 
HETATM 24 N N7 GNP . . . O 3 -1.699 39.534 -6.119 1 29.33 ? N7 GNP 1400 E 1 
HETATM 25 C C5 GNP . . . O 3 -2.177 40.658 -5.454 1 27.93 ? C5 GNP 1400 E 1 
HETATM 26 C C6 GNP . . . O 3 -2.84 41.806 -5.952 1 27.57 ? C6 GNP 1400 E 1 
HETATM 27 O O6 GNP . . . O 3 -3.136 42.072 -7.115 1 28.9 ? O6 GNP 1400 E 1 
HETATM 28 N N1 GNP . . . O 3 -3.155 42.719 -4.957 1 28.8 ? N1 GNP 1400 E 1 
HETATM 29 C C2 GNP . . . O 3 -2.854 42.532 -3.618 1 30.41 ? C2 GNP 1400 E 1 
HETATM 30 N N2 GNP . . . O 3 -3.232 43.505 -2.765 1 30.59 ? N2 GNP 1400 E 1 
HETATM 31 N N3 GNP . . . O 3 -2.222 41.459 -3.136 1 29.97 ? N3 GNP 1400 E 1 
HETATM 32 C C4 GNP . . . O 3 -1.912 40.563 -4.107 1 28.55 ? C4 GNP 1400 E 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#