data_3LB6
#
_model_server_result.job_id            wdBURJ1TSLKWrjQmty9Ogw 
_model_server_result.datetime_utc      '2024-11-05 01:28:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lb6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    3LB6 
#
_exptl.entry_id    3LB6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.77 
_cell.angle_gamma         90 
_cell.entry_id            3LB6 
_cell.length_a            73.37 
_cell.length_b            86.57 
_cell.length_c            166.788 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LB6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 48 A CYS 29 1_555 A SG CYS 76 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 A SG CYS 64 A CYS 45 1_555 A SG CYS 90 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 B SG CYS 65 C CYS 65 1_555 B SG CYS 113 C CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf4 B SG CYS 145 C CYS 145 1_555 B SG CYS 155 C CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 B SG CYS 184 C CYS 184 1_555 B SG CYS 197 C CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 B SG CYS 269 C CYS 269 1_555 B SG CYS 316 C CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 48 B CYS 29 1_555 C SG CYS 76 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf8 C SG CYS 64 B CYS 45 1_555 C SG CYS 90 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf9 D SG CYS 65 D CYS 65 1_555 D SG CYS 113 D CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 D SG CYS 145 D CYS 145 1_555 D SG CYS 155 D CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 D SG CYS 184 D CYS 184 1_555 D SG CYS 197 D CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 D SG CYS 269 D CYS 269 1_555 D SG CYS 316 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf13 D SG CYS 305 D CYS 305 1_555 D SG CYS 330 D CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 B C ALA 103 C ALA 103 1_555 B N MLY 104 C MLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 B C MLY 104 C MLY 104 1_555 B N ILE 105 C ILE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 B C THR 138 C THR 138 1_555 B N MLY 139 C MLY 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C MLY 139 C MLY 139 1_555 B N VAL 140 C VAL 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale5 B ND2 ASN 215 C ASN 215 1_555 E C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale6 C C THR 107 B THR 88 1_555 C N MLY 108 B MLY 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale7 C C MLY 108 B MLY 89 1_555 C N ILE 109 B ILE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale8 D C TRP 81 D TRP 81 1_555 D N MLY 82 D MLY 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale9 D C MLY 82 D MLY 82 1_555 D N THR 83 D THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale10 D C ASN 98 D ASN 98 1_555 D N MLY 99 D MLY 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 D C MLY 99 D MLY 99 1_555 D N GLY 100 D GLY 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale12 D ND2 ASN 215 D ASN 215 1_555 G C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
metalc ? metalc1 I O HOH . A HOH 114 1_555 F CA CA . C CA 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? 
metalc ? metalc2 B OD1 ASP 93 C ASP 93 1_555 F CA CA . C CA 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc3 F CA CA . C CA 381 1_555 J O HOH . C HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc4 F CA CA . C CA 381 1_555 J O HOH . C HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? 
metalc ? metalc5 D OD1 ASP 93 D ASP 93 1_555 H CA CA . D CA 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc6 H CA CA . D CA 381 1_555 L O HOH . D HOH 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc7 H CA CA . D CA 381 1_555 L O HOH . D HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
metalc ? metalc8 H CA CA . D CA 381 1_555 L O HOH . D HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 266 n n 
C1 O1 NAG sing 267 n n 
C1 O5 NAG sing 268 n n 
C1 H1 NAG sing 269 n n 
C2 C3 NAG sing 270 n n 
C2 N2 NAG sing 271 n n 
C2 H2 NAG sing 272 n n 
C3 C4 NAG sing 273 n n 
C3 O3 NAG sing 274 n n 
C3 H3 NAG sing 275 n n 
C4 C5 NAG sing 276 n n 
C4 O4 NAG sing 277 n n 
C4 H4 NAG sing 278 n n 
C5 C6 NAG sing 279 n n 
C5 O5 NAG sing 280 n n 
C5 H5 NAG sing 281 n n 
C6 O6 NAG sing 282 n n 
C6 H61 NAG sing 283 n n 
C6 H62 NAG sing 284 n n 
C7 C8 NAG sing 285 n n 
C7 N2 NAG sing 286 n n 
C7 O7 NAG doub 287 n n 
C8 H81 NAG sing 288 n n 
C8 H82 NAG sing 289 n n 
C8 H83 NAG sing 290 n n 
N2 HN2 NAG sing 291 n n 
O1 HO1 NAG sing 292 n n 
O3 HO3 NAG sing 293 n n 
O4 HO4 NAG sing 294 n n 
O6 HO6 NAG sing 295 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3LB6 
_atom_sites.fract_transf_matrix[1][1]    0.01363 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001617 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011551 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NAG C 1 501 501 NAG NAG . 
F 6 CA C 1 381 1 CA CA . 
G 5 NAG D 1 501 501 NAG NAG . 
H 6 CA D 1 381 1 CA CA . 
I 7 HOH A 1 114 1 HOH HOH . 
I 7 HOH A 2 115 2 HOH HOH . 
I 7 HOH A 3 116 4 HOH HOH . 
I 7 HOH A 4 117 5 HOH HOH . 
I 7 HOH A 5 118 6 HOH HOH . 
I 7 HOH A 6 119 27 HOH HOH . 
I 7 HOH A 7 120 30 HOH HOH . 
J 7 HOH C 1 382 3 HOH HOH . 
J 7 HOH C 2 383 26 HOH HOH . 
J 7 HOH C 3 384 29 HOH HOH . 
J 7 HOH C 4 385 31 HOH HOH . 
K 7 HOH B 1 114 11 HOH HOH . 
K 7 HOH B 2 115 12 HOH HOH . 
K 7 HOH B 3 116 13 HOH HOH . 
K 7 HOH B 4 117 21 HOH HOH . 
L 7 HOH D 1 382 7 HOH HOH . 
L 7 HOH D 2 383 8 HOH HOH . 
L 7 HOH D 3 384 9 HOH HOH . 
L 7 HOH D 4 385 10 HOH HOH . 
L 7 HOH D 5 386 14 HOH HOH . 
L 7 HOH D 6 387 15 HOH HOH . 
L 7 HOH D 7 388 16 HOH HOH . 
L 7 HOH D 8 389 17 HOH HOH . 
L 7 HOH D 9 390 18 HOH HOH . 
L 7 HOH D 10 391 19 HOH HOH . 
L 7 HOH D 11 392 20 HOH HOH . 
L 7 HOH D 12 393 22 HOH HOH . 
L 7 HOH D 13 394 23 HOH HOH . 
L 7 HOH D 14 395 24 HOH HOH . 
L 7 HOH D 15 396 25 HOH HOH . 
L 7 HOH D 16 397 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 5 54.444 -57.208 22.57 1 78.67 ? C1 NAG 501 D 1 
HETATM 2 C C2 NAG . . . G 5 55.646 -58.111 22.298 1 79.81 ? C2 NAG 501 D 1 
HETATM 3 C C3 NAG . . . G 5 55.371 -59.368 21.473 1 79.7 ? C3 NAG 501 D 1 
HETATM 4 C C4 NAG . . . G 5 53.953 -59.903 21.642 1 80.88 ? C4 NAG 501 D 1 
HETATM 5 C C5 NAG . . . G 5 52.96 -58.749 21.592 1 81.35 ? C5 NAG 501 D 1 
HETATM 6 C C6 NAG . . . G 5 51.522 -59.254 21.633 1 79.81 ? C6 NAG 501 D 1 
HETATM 7 C C7 NAG . . . G 5 57.294 -56.369 22.285 1 83.56 ? C7 NAG 501 D 1 
HETATM 8 C C8 NAG . . . G 5 57.882 -55.252 21.467 1 81.08 ? C8 NAG 501 D 1 
HETATM 9 N N2 NAG . . . G 5 56.636 -57.309 21.615 1 81.89 ? N2 NAG 501 D 1 
HETATM 10 O O3 NAG . . . G 5 56.278 -60.377 21.858 1 80.12 ? O3 NAG 501 D 1 
HETATM 11 O O4 NAG . . . G 5 53.661 -60.874 20.653 1 82.13 ? O4 NAG 501 D 1 
HETATM 12 O O5 NAG . . . G 5 53.212 -57.892 22.686 1 83.16 ? O5 NAG 501 D 1 
HETATM 13 O O6 NAG . . . G 5 51.371 -60.17 22.694 1 78.79 ? O6 NAG 501 D 1 
HETATM 14 O O7 NAG . . . G 5 57.419 -56.404 23.516 1 84.49 ? O7 NAG 501 D 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#