data_3LB8 # _model_server_result.job_id jSxhGgxRfp80OreUlVMyAA _model_server_result.datetime_utc '2025-01-07 08:48:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":107}' # _entry.id 3LB8 # _exptl.entry_id 3LB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LB8 _cell.length_a 67.6 _cell.length_b 103.4 _cell.length_c 167.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I,K 1 1 B,D,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 48 D CYS 48 1_555 D SG CYS 86 D CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? covale ? covale1 A NZ LYS 408 A LYS 409 1_555 C OE1 GLU 72 C GLU 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale2 B NZ LYS 408 B LYS 409 1_555 D OE1 GLU 72 D GLU 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? metalc ? metalc1 C SG CYS 39 C CYS 39 1_555 G FE1 FES . C FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 C SG CYS 45 C CYS 45 1_555 G FE1 FES . C FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc3 C SG CYS 48 C CYS 48 1_555 G FE2 FES . C FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 C SG CYS 86 C CYS 86 1_555 G FE2 FES . C FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 D SG CYS 39 D CYS 39 1_555 H FE1 FES . D FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc6 D SG CYS 45 D CYS 45 1_555 H FE1 FES . D FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc7 D SG CYS 48 D CYS 48 1_555 H FE2 FES . D FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc8 D SG CYS 86 D CYS 86 1_555 H FE2 FES . D FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 174 n n FE1 S2 FES sing 175 n n FE2 S1 FES sing 176 n n FE2 S2 FES sing 177 n n # _atom_sites.entry_id 3LB8 _atom_sites.fract_transf_matrix[1][1] 0.014793 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 FAD A 1 449 449 FAD FAD . F 3 FAD B 1 449 449 FAD FAD . G 4 FES C 1 107 107 FES FES . H 4 FES D 1 107 107 FES FES . I 5 HOH A 1 1 1 HOH HOH . I 5 HOH A 2 438 2 HOH HOH . I 5 HOH A 3 439 4 HOH HOH . I 5 HOH A 4 440 6 HOH HOH . I 5 HOH A 5 441 7 HOH HOH . I 5 HOH A 6 442 8 HOH HOH . I 5 HOH A 7 443 9 HOH HOH . I 5 HOH A 8 444 10 HOH HOH . I 5 HOH A 9 445 12 HOH HOH . I 5 HOH A 10 446 13 HOH HOH . I 5 HOH A 11 447 14 HOH HOH . I 5 HOH A 12 448 16 HOH HOH . I 5 HOH A 13 450 17 HOH HOH . I 5 HOH A 14 451 18 HOH HOH . I 5 HOH A 15 452 20 HOH HOH . I 5 HOH A 16 453 21 HOH HOH . I 5 HOH A 17 454 22 HOH HOH . I 5 HOH A 18 455 24 HOH HOH . I 5 HOH A 19 456 25 HOH HOH . I 5 HOH A 20 457 26 HOH HOH . I 5 HOH A 21 458 27 HOH HOH . I 5 HOH A 22 459 28 HOH HOH . I 5 HOH A 23 460 30 HOH HOH . I 5 HOH A 24 461 31 HOH HOH . I 5 HOH A 25 462 32 HOH HOH . I 5 HOH A 26 463 34 HOH HOH . I 5 HOH A 27 464 36 HOH HOH . I 5 HOH A 28 465 37 HOH HOH . I 5 HOH A 29 466 38 HOH HOH . I 5 HOH A 30 467 39 HOH HOH . I 5 HOH A 31 468 41 HOH HOH . I 5 HOH A 32 469 43 HOH HOH . I 5 HOH A 33 470 44 HOH HOH . I 5 HOH A 34 471 45 HOH HOH . I 5 HOH A 35 472 46 HOH HOH . I 5 HOH A 36 473 47 HOH HOH . I 5 HOH A 37 474 48 HOH HOH . I 5 HOH A 38 475 49 HOH HOH . I 5 HOH A 39 476 50 HOH HOH . I 5 HOH A 40 477 52 HOH HOH . I 5 HOH A 41 478 53 HOH HOH . I 5 HOH A 42 479 54 HOH HOH . I 5 HOH A 43 480 55 HOH HOH . I 5 HOH A 44 481 56 HOH HOH . I 5 HOH A 45 482 57 HOH HOH . I 5 HOH A 46 483 59 HOH HOH . I 5 HOH A 47 484 60 HOH HOH . I 5 HOH A 48 485 61 HOH HOH . I 5 HOH A 49 486 62 HOH HOH . J 5 HOH B 1 438 3 HOH HOH . J 5 HOH B 2 439 5 HOH HOH . J 5 HOH B 3 440 15 HOH HOH . J 5 HOH B 4 441 19 HOH HOH . J 5 HOH B 5 442 23 HOH HOH . J 5 HOH B 6 443 29 HOH HOH . J 5 HOH B 7 444 33 HOH HOH . J 5 HOH B 8 445 35 HOH HOH . J 5 HOH B 9 446 40 HOH HOH . J 5 HOH B 10 447 42 HOH HOH . J 5 HOH B 11 448 58 HOH HOH . K 5 HOH C 1 108 11 HOH HOH . K 5 HOH C 2 109 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . H 4 19.942 14.109 33.018 1 109.7 ? FE1 FES 107 D 1 HETATM 2 FE FE2 FES . . . H 4 21.555 12.934 31.128 1 109.67 ? FE2 FES 107 D 1 HETATM 3 S S1 FES . . . H 4 20.105 11.881 32.453 1 109.42 ? S1 FES 107 D 1 HETATM 4 S S2 FES . . . H 4 21.44 15.065 31.627 1 109.23 ? S2 FES 107 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #