data_3LBD # _model_server_result.job_id pNnw8Z7NyGjOyoKSyRXzYA _model_server_result.datetime_utc '2024-11-04 23:08:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":424}' # _entry.id 3LBD # _exptl.entry_id 3LBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(9cis)-retinoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LBD _cell.length_a 60.666 _cell.length_b 60.666 _cell.length_c 155.134 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id 9CR _chem_comp.mon_nstd_flag . _chem_comp.name '(9cis)-retinoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C15 9CR doub 1 n n C15 C14 9CR sing 2 n n C15 O2 9CR sing 3 n n C14 C13 9CR doub 4 e n C13 C12 9CR sing 5 n n C13 C20 9CR sing 6 n n C12 C11 9CR doub 7 e n C11 C10 9CR sing 8 n n C18 C5 9CR sing 9 n n C10 C9 9CR doub 10 z n C9 C19 9CR sing 11 n n C9 C8 9CR sing 12 n n C8 C7 9CR doub 13 e n C5 C4 9CR sing 14 n n C5 C6 9CR doub 15 n n C4 C3 9CR sing 16 n n C7 C6 9CR sing 17 n n C6 C1 9CR sing 18 n n C3 C2 9CR sing 19 n n C1 C17 9CR sing 20 n n C1 C2 9CR sing 21 n n C1 C16 9CR sing 22 n n C2 H1 9CR sing 23 n n C2 H2 9CR sing 24 n n C3 H3 9CR sing 25 n n C3 H4 9CR sing 26 n n C4 H5 9CR sing 27 n n C4 H6 9CR sing 28 n n C7 H7 9CR sing 29 n n C8 H8 9CR sing 30 n n C10 H9 9CR sing 31 n n C11 H10 9CR sing 32 n n C12 H11 9CR sing 33 n n C14 H12 9CR sing 34 n n C16 H13 9CR sing 35 n n C16 H14 9CR sing 36 n n C16 H15 9CR sing 37 n n C17 H16 9CR sing 38 n n C17 H17 9CR sing 39 n n C17 H18 9CR sing 40 n n C18 H19 9CR sing 41 n n C18 H20 9CR sing 42 n n C18 H21 9CR sing 43 n n C19 H22 9CR sing 44 n n C19 H23 9CR sing 45 n n C19 H24 9CR sing 46 n n C20 H25 9CR sing 47 n n C20 H26 9CR sing 48 n n C20 H27 9CR sing 49 n n O2 H28 9CR sing 50 n n # _atom_sites.entry_id 3LBD _atom_sites.fract_transf_matrix[1][1] 0.016484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9CR A 1 424 420 9CR REA . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 508 HOH HOH . C 3 HOH A 9 509 509 HOH HOH . C 3 HOH A 10 510 510 HOH HOH . C 3 HOH A 11 511 511 HOH HOH . C 3 HOH A 12 512 512 HOH HOH . C 3 HOH A 13 513 513 HOH HOH . C 3 HOH A 14 514 514 HOH HOH . C 3 HOH A 15 515 515 HOH HOH . C 3 HOH A 16 516 516 HOH HOH . C 3 HOH A 17 517 517 HOH HOH . C 3 HOH A 18 518 518 HOH HOH . C 3 HOH A 19 519 519 HOH HOH . C 3 HOH A 20 520 520 HOH HOH . C 3 HOH A 21 521 521 HOH HOH . C 3 HOH A 22 522 522 HOH HOH . C 3 HOH A 23 523 523 HOH HOH . C 3 HOH A 24 524 524 HOH HOH . C 3 HOH A 25 525 525 HOH HOH . C 3 HOH A 26 526 526 HOH HOH . C 3 HOH A 27 527 527 HOH HOH . C 3 HOH A 28 528 528 HOH HOH . C 3 HOH A 29 529 529 HOH HOH . C 3 HOH A 30 530 530 HOH HOH . C 3 HOH A 31 531 531 HOH HOH . C 3 HOH A 32 532 532 HOH HOH . C 3 HOH A 33 533 533 HOH HOH . C 3 HOH A 34 534 534 HOH HOH . C 3 HOH A 35 535 535 HOH HOH . C 3 HOH A 36 536 536 HOH HOH . C 3 HOH A 37 537 537 HOH HOH . C 3 HOH A 38 538 538 HOH HOH . C 3 HOH A 39 539 539 HOH HOH . C 3 HOH A 40 540 540 HOH HOH . C 3 HOH A 41 541 541 HOH HOH . C 3 HOH A 42 542 542 HOH HOH . C 3 HOH A 43 543 543 HOH HOH . C 3 HOH A 44 544 544 HOH HOH . C 3 HOH A 45 545 545 HOH HOH . C 3 HOH A 46 546 546 HOH HOH . C 3 HOH A 47 547 547 HOH HOH . C 3 HOH A 48 548 548 HOH HOH . C 3 HOH A 49 549 549 HOH HOH . C 3 HOH A 50 550 550 HOH HOH . C 3 HOH A 51 551 551 HOH HOH . C 3 HOH A 52 552 552 HOH HOH . C 3 HOH A 53 553 553 HOH HOH . C 3 HOH A 54 554 554 HOH HOH . C 3 HOH A 55 555 555 HOH HOH . C 3 HOH A 56 556 556 HOH HOH . C 3 HOH A 57 557 557 HOH HOH . C 3 HOH A 58 558 558 HOH HOH . C 3 HOH A 59 559 559 HOH HOH . C 3 HOH A 60 560 560 HOH HOH . C 3 HOH A 61 561 561 HOH HOH . C 3 HOH A 62 562 562 HOH HOH . C 3 HOH A 63 563 563 HOH HOH . C 3 HOH A 64 564 564 HOH HOH . C 3 HOH A 65 565 565 HOH HOH . C 3 HOH A 66 566 566 HOH HOH . C 3 HOH A 67 567 567 HOH HOH . C 3 HOH A 68 568 568 HOH HOH . C 3 HOH A 69 569 569 HOH HOH . C 3 HOH A 70 570 570 HOH HOH . C 3 HOH A 71 571 571 HOH HOH . C 3 HOH A 72 572 572 HOH HOH . C 3 HOH A 73 573 573 HOH HOH . C 3 HOH A 74 574 574 HOH HOH . C 3 HOH A 75 575 575 HOH HOH . C 3 HOH A 76 576 576 HOH HOH . C 3 HOH A 77 577 577 HOH HOH . C 3 HOH A 78 578 578 HOH HOH . C 3 HOH A 79 579 579 HOH HOH . C 3 HOH A 80 580 580 HOH HOH . C 3 HOH A 81 581 581 HOH HOH . C 3 HOH A 82 582 582 HOH HOH . C 3 HOH A 83 583 583 HOH HOH . C 3 HOH A 84 584 584 HOH HOH . C 3 HOH A 85 585 585 HOH HOH . C 3 HOH A 86 586 586 HOH HOH . C 3 HOH A 87 587 587 HOH HOH . C 3 HOH A 88 588 588 HOH HOH . C 3 HOH A 89 589 589 HOH HOH . C 3 HOH A 90 590 590 HOH HOH . C 3 HOH A 91 591 591 HOH HOH . C 3 HOH A 92 592 592 HOH HOH . C 3 HOH A 93 593 593 HOH HOH . C 3 HOH A 94 594 594 HOH HOH . C 3 HOH A 95 595 595 HOH HOH . C 3 HOH A 96 596 596 HOH HOH . C 3 HOH A 97 597 597 HOH HOH . C 3 HOH A 98 598 598 HOH HOH . C 3 HOH A 99 599 599 HOH HOH . C 3 HOH A 100 600 600 HOH HOH . C 3 HOH A 101 601 601 HOH HOH . C 3 HOH A 102 602 602 HOH HOH . C 3 HOH A 103 603 603 HOH HOH . C 3 HOH A 104 604 604 HOH HOH . C 3 HOH A 105 605 605 HOH HOH . C 3 HOH A 106 606 606 HOH HOH . C 3 HOH A 107 607 607 HOH HOH . C 3 HOH A 108 608 608 HOH HOH . C 3 HOH A 109 609 609 HOH HOH . C 3 HOH A 110 610 610 HOH HOH . C 3 HOH A 111 611 611 HOH HOH . C 3 HOH A 112 612 612 HOH HOH . C 3 HOH A 113 613 613 HOH HOH . C 3 HOH A 114 614 614 HOH HOH . C 3 HOH A 115 615 615 HOH HOH . C 3 HOH A 116 616 616 HOH HOH . C 3 HOH A 117 617 617 HOH HOH . C 3 HOH A 118 618 618 HOH HOH . C 3 HOH A 119 619 619 HOH HOH . C 3 HOH A 120 620 620 HOH HOH . C 3 HOH A 121 621 621 HOH HOH . C 3 HOH A 122 622 622 HOH HOH . C 3 HOH A 123 623 623 HOH HOH . C 3 HOH A 124 624 624 HOH HOH . C 3 HOH A 125 625 625 HOH HOH . C 3 HOH A 126 626 626 HOH HOH . C 3 HOH A 127 627 627 HOH HOH . C 3 HOH A 128 628 628 HOH HOH . C 3 HOH A 129 629 629 HOH HOH . C 3 HOH A 130 630 630 HOH HOH . C 3 HOH A 131 631 631 HOH HOH . C 3 HOH A 132 632 632 HOH HOH . C 3 HOH A 133 633 633 HOH HOH . C 3 HOH A 134 634 634 HOH HOH . C 3 HOH A 135 635 635 HOH HOH . C 3 HOH A 136 636 636 HOH HOH . C 3 HOH A 137 637 637 HOH HOH . C 3 HOH A 138 638 638 HOH HOH . C 3 HOH A 139 639 639 HOH HOH . C 3 HOH A 140 640 640 HOH HOH . C 3 HOH A 141 641 641 HOH HOH . C 3 HOH A 142 642 642 HOH HOH . C 3 HOH A 143 643 643 HOH HOH . C 3 HOH A 144 644 644 HOH HOH . C 3 HOH A 145 645 645 HOH HOH . C 3 HOH A 146 646 646 HOH HOH . C 3 HOH A 147 647 647 HOH HOH . C 3 HOH A 148 648 648 HOH HOH . C 3 HOH A 149 649 649 HOH HOH . C 3 HOH A 150 650 650 HOH HOH . C 3 HOH A 151 651 651 HOH HOH . C 3 HOH A 152 652 652 HOH HOH . C 3 HOH A 153 653 653 HOH HOH . C 3 HOH A 154 654 654 HOH HOH . C 3 HOH A 155 655 655 HOH HOH . C 3 HOH A 156 656 656 HOH HOH . C 3 HOH A 157 657 657 HOH HOH . C 3 HOH A 158 658 658 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9CR . . . B 2 43.528 13.796 81.174 1 28.13 ? C1 9CR 424 A 1 HETATM 2 C C2 9CR . . . B 2 44.809 14.519 80.658 1 28.81 ? C2 9CR 424 A 1 HETATM 3 C C3 9CR . . . B 2 44.755 16.025 80.663 1 29.53 ? C3 9CR 424 A 1 HETATM 4 C C4 9CR . . . B 2 44.462 16.596 82.015 1 27.44 ? C4 9CR 424 A 1 HETATM 5 C C5 9CR . . . B 2 43.312 15.88 82.728 1 26.52 ? C5 9CR 424 A 1 HETATM 6 C C6 9CR . . . B 2 42.883 14.615 82.374 1 26.99 ? C6 9CR 424 A 1 HETATM 7 C C7 9CR . . . B 2 41.796 13.865 83.06 1 26.84 ? C7 9CR 424 A 1 HETATM 8 C C8 9CR . . . B 2 40.735 14.297 83.771 1 25.35 ? C8 9CR 424 A 1 HETATM 9 C C9 9CR . . . B 2 39.812 13.409 84.427 1 25.27 ? C9 9CR 424 A 1 HETATM 10 C C10 9CR . . . B 2 38.777 13.897 85.147 1 24.44 ? C10 9CR 424 A 1 HETATM 11 C C11 9CR . . . B 2 38.409 15.285 85.361 1 23.95 ? C11 9CR 424 A 1 HETATM 12 C C12 9CR . . . B 2 37.318 15.476 86.132 1 24.68 ? C12 9CR 424 A 1 HETATM 13 C C13 9CR . . . B 2 36.695 16.757 86.422 1 23.55 ? C13 9CR 424 A 1 HETATM 14 C C14 9CR . . . B 2 35.577 16.734 87.192 1 23.97 ? C14 9CR 424 A 1 HETATM 15 C C15 9CR . . . B 2 34.661 17.805 87.629 1 24.49 ? C15 9CR 424 A 1 HETATM 16 C C16 9CR . . . B 2 43.943 12.39 81.655 1 25.97 ? C16 9CR 424 A 1 HETATM 17 C C17 9CR . . . B 2 42.491 13.675 80.011 1 28 ? C17 9CR 424 A 1 HETATM 18 C C18 9CR . . . B 2 42.763 16.768 83.846 1 26.31 ? C18 9CR 424 A 1 HETATM 19 C C19 9CR . . . B 2 40.035 11.897 84.304 1 26.32 ? C19 9CR 424 A 1 HETATM 20 C C20 9CR . . . B 2 37.293 18.037 85.82 1 24.06 ? C20 9CR 424 A 1 HETATM 21 O O1 9CR . . . B 2 34.796 18.975 87.231 1 24.02 ? O1 9CR 424 A 1 HETATM 22 O O2 9CR . . . B 2 33.718 17.504 88.371 1 27.64 ? O2 9CR 424 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #